Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d027667_T016
CDS Infomation

cds chromosome:B73_RefGen_v4:1:10614827:10618369:-1 gene:Zm00001d027667 gene_biotype:protein_coding transcript_biotype:protein_coding description: citrate transporter1
Sequence

ATGGCGTTGGCAGGGACCTCCAAAGTAGTGCTGGGATGTATCGCCTTTGGGATTTTCTGG
GTGATGGCCGTCTTCCCCACCGTCCCGTTCATGCCTGTTGGGCGGACGGCTGGGTCCCTC
CTTGGTGCTATGCTAATGGTCCTGTTCCGCGTCATCTCCCCGGAGGACGCGTACGCCGCG
ATTGACCTCCCGATCATCGGCCTGCTCTTCGGGACAATGGTCGTCAGCATCTTCCTTGAG
AGGGCTGACATGTTTAAGTACCTCGGGAACCTGCTCTCGTGGAAGAGCAGAGGCAGCAAG
GACCTGCTCTTCCGAGTCTGCATCGTGTCCGCGTTTGCCAGCGCGCTTTTCACCAATGAC
ACATGCTGTGTTGTCCTCACCGAGTTCATCCTCAAGGTTGCTAGGCAAAACAACCTGCCA
CCACAGCCTTTCCTTCTGGCCCTTGCCACTAGTTCGAACATCGGCTCTGCTGCCACGCCG
ATCGGCAACCCTCAGAACCTTGTCATAGCTGTCGAGAGTGGGATCTCATTTGGCCAGTTC
TTGCTGGGAGTTTTCCCAGCTATGATCGTTGGGGTTCTCACAAACGCTGCTATCCTCCTT
TTGTACTTCTGGAAATACTTGTCGGTGGAGAAGGATCAGGAGGGTGGGCAGCCCACAGGA
CCAGAGGTGGTTGCCGACGATGAGGTTACTTCCCATCGGTTCACACCGGCTAGAATGTCA
CATGTTTCTTCTCTGAATCCAGATGACATGGATTGCGTAAGCGAACCGATCATCAGGAGC
AACAGTGTCAGTACTACTGGGAATGAGAACCTGAGAAGCAGAAGCATCAATTCTGAGGCT
GACATTCAGCTTGCGATCAAGTCTCTGCGGGCATCAAGCATGTCGCATGAGATGGTAGAG
GTCTCGACGGTTCCTGATCGGAGAGATGAAGGTGCATCCTCAAGGAAGTTCACAAGGACT
GCTAGCCAGCAAAGGAGCGTGATAATAGAGGATTTAGCACCCTCCCCAGAGATTAATGGG
GAAAAGGAGAAAGAAACTGAAGTTGCAGAGAAGAGATGGAAAGTACTTGTGTGGAAGACT
GCTGTTTATCTTATCACTCTCGGTATGCTCATTGCACTTCTAATGGGACTGAACATGTCC
TGGACTGCAATCACTGCAGCTCTTGTTCTTCTGGCACTCGATTTTACGGACGCACAAGCT
TGTCTTGAGAAGGTGTCATATTCACTGCTGATCTTTTTCTGCGGGATGTTTATCACTGTT
GATGGCTTCAACAAAACGGGCATACCGAACACACTATGGGAGTTAGTGGAACCATATTCA
CGAATCGATAGTGCGAAAGGTGTTGCACTTCTTGCCGTGGTGATTCTTATCCTTTCAAAC
GTGGCCTCTAATGTTCCTACAGTCCTATTGCTCGGTACAAGAGTGGCTGCATCAGCGGCT
TCGATTTCTCATGGTTCAGAGAGGAAAGCCTGGCTCATCCTTGCATGGGTCAGCACCGTG
GCTGGGAACCTCACCCTCCTAGGCTCTGCGGCGAATCTGATTGTCTGCGAGCAGGCCAGG
CGGGCCCAGTTCTTCGGCTACAACCTCACCTTCTGGAGCCACCTCCGATTCGGGGTCCCG
TCGACCATCATCGTCACGGCGATTGGTTTGCTCATCGTCATCAGTTACTGA

Peptide Sequence

PEP ID

Zm00001d027667_P016
PEP Infomation

pep chromosome:B73_RefGen_v4:1:10614827:10618369:-1 gene:Zm00001d027667 transcript:Zm00001d027667_T016 gene_biotype:protein_coding transcript_biotype:protein_coding description: citrate transporter1
Sequence

MALAGTSKVVLGCIAFGIFWVMAVFPTVPFMPVGRTAGSLLGAMLMVLFRVISPEDAYAA
IDLPIIGLLFGTMVVSIFLERADMFKYLGNLLSWKSRGSKDLLFRVCIVSAFASALFTND
TCCVVLTEFILKVARQNNLPPQPFLLALATSSNIGSAATPIGNPQNLVIAVESGISFGQF
LLGVFPAMIVGVLTNAAILLLYFWKYLSVEKDQEGGQPTGPEVVADDEVTSHRFTPARMS
HVSSLNPDDMDCVSEPIIRSNSVSTTGNENLRSRSINSEADIQLAIKSLRASSMSHEMVE
VSTVPDRRDEGASSRKFTRTASQQRSVIIEDLAPSPEINGEKEKETEVAEKRWKVLVWKT
AVYLITLGMLIALLMGLNMSWTAITAALVLLALDFTDAQACLEKVSYSLLIFFCGMFITV
DGFNKTGIPNTLWELVEPYSRIDSAKGVALLAVVILILSNVASNVPTVLLLGTRVAASAA
SISHGSERKAWLILAWVSTVAGNLTLLGSAANLIVCEQARRAQFFGYNLTFWSHLRFGVP
STIIVTAIGLLIVISY

Transcript Sequence

Transcript ID

Zm00001d027667_T016
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:10614827:10618369:-1 gene:Zm00001d027667 gene_biotype:protein_coding transcript_biotype:protein_coding description: citrate transporter1
Sequence

ATGCCTCCAGTGTCCAGTCCAGAGTCCAGGCTCCAGGACTACCACCACTCCGTCTCGTCT
CGTCCTCACACCCCACTCCACCACCACCTCTGCCTTGCAAAGCTTTCCACCGATCCGCCG
CCTCGTCCGCGCGCTCGCAGGCAGCAGTGTGGACTACCCGCCCCATACTCCATCCCCTAC
TCGAAGGACCTCGAGTTATTAAGTTGGGCGAGGAGAGGTGGTTCATTCCAGCAGGGATCC
TTCTCGTGAGCCCAGTCGATCTGACCGTCCTTGGTATCTGGGGGGGGTTGTTCTGTACTC
TCTCTTTAATTTGTGAGTCGTGACAGGTTCTTGAAGTGCAATTGTTAAGAGTTTTAGTTG
TAGAGGAAGAGAAGGGTTTGCTAATATGGCGTTGGCAGGGACCTCCAAAGTAGTGCTGGG
ATGTATCGCCTTTGGGATTTTCTGGGTGATGGCCGTCTTCCCCACCGTCCCGTTCATGCC
TGTTGGGCGGACGGCTGGGTCCCTCCTTGGTGCTATGCTAATGGTCCTGTTCCGCGTCAT
CTCCCCGGAGGACGCGTACGCCGCGATTGACCTCCCGATCATCGGCCTGCTCTTCGGGAC
AATGGTCGTCAGCATCTTCCTTGAGAGGGCTGACATGTTTAAGTACCTCGGGAACCTGCT
CTCGTGGAAGAGCAGAGGCAGCAAGGACCTGCTCTTCCGAGTCTGCATCGTGTCCGCGTT
TGCCAGCGCGCTTTTCACCAATGACACATGCTGTGTTGTCCTCACCGAGTTCATCCTCAA
GGTTGCTAGGCAAAACAACCTGCCACCACAGCCTTTCCTTCTGGCCCTTGCCACTAGTTC
GAACATCGGCTCTGCTGCCACGCCGATCGGCAACCCTCAGAACCTTGTCATAGCTGTCGA
GAGTGGGATCTCATTTGGCCAGTTCTTGCTGGGAGTTTTCCCAGCTATGATCGTTGGGGT
TCTCACAAACGCTGCTATCCTCCTTTTGTACTTCTGGAAATACTTGTCGGTGGAGAAGGA
TCAGGAGGGTGGGCAGCCCACAGGACCAGAGGTGGTTGCCGACGATGAGGTTACTTCCCA
TCGGTTCACACCGGCTAGAATGTCACATGTTTCTTCTCTGAATCCAGATGACATGGATTG
CGTAAGCGAACCGATCATCAGGAGCAACAGTGTCAGTACTACTGGGAATGAGAACCTGAG
AAGCAGAAGCATCAATTCTGAGGCTGACATTCAGCTTGCGATCAAGTCTCTGCGGGCATC
AAGCATGTCGCATGAGATGGTAGAGGTCTCGACGGTTCCTGATCGGAGAGATGAAGGTGC
ATCCTCAAGGAAGTTCACAAGGACTGCTAGCCAGCAAAGGAGCGTGATAATAGAGGATTT
AGCACCCTCCCCAGAGATTAATGGGGAAAAGGAGAAAGAAACTGAAGTTGCAGAGAAGAG
ATGGAAAGTACTTGTGTGGAAGACTGCTGTTTATCTTATCACTCTCGGTATGCTCATTGC
ACTTCTAATGGGACTGAACATGTCCTGGACTGCAATCACTGCAGCTCTTGTTCTTCTGGC
ACTCGATTTTACGGACGCACAAGCTTGTCTTGAGAAGGTGTCATATTCACTGCTGATCTT
TTTCTGCGGGATGTTTATCACTGTTGATGGCTTCAACAAAACGGGCATACCGAACACACT
ATGGGAGTTAGTGGAACCATATTCACGAATCGATAGTGCGAAAGGTGTTGCACTTCTTGC
CGTGGTGATTCTTATCCTTTCAAACGTGGCCTCTAATGTTCCTACAGTCCTATTGCTCGG
TACAAGAGTGGCTGCATCAGCGGCTTCGATTTCTCATGGTTCAGAGAGGAAAGCCTGGCT
CATCCTTGCATGGGTCAGCACCGTGGCTGGGAACCTCACCCTCCTAGGCTCTGCGGCGAA
TCTGATTGTCTGCGAGCAGGCCAGGCGGGCCCAGTTCTTCGGCTACAACCTCACCTTCTG
GAGCCACCTCCGATTCGGGGTCCCGTCGACCATCATCGTCACGGCGATTGGTTTGCTCAT
CGTCATCAGTTACTGAAACAGCTGAAGGCAGAAGAGCGTAGTGTAAGAGAAGCAGAATGG
ATAAAAATCCTTCCAATAAGAAGTACATGTAAATTAGGCTTGCCCTATAACTCAAGTGTG
TATCGGTACGTTATGTCTCCGTCTGTGCTCTTGCTCGTGAGCAAGCAGCACATGGCTGAC
CGTGTAGCTTGCATTTCCATTGCATAATAGGCTTATGAAGAATGCTTTGG