Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d027612_T010
CDS Infomation

cds chromosome:B73_RefGen_v4:1:9009250:9012823:-1 gene:Zm00001d027612 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glutamate--tRNA ligase cytoplasmic
Sequence

ATGGAGGCAGCTTTGTCATTCTCCAAGGACAGCCCACCAATTTCGATAATTTGTGCTGCA
AAGATTGTGGGTCTACCCCTAACCATCAATCATAGCCTCGCTGCTGGCTCGGCACCCACC
CTACAGTTTGCTTCTGGAGAATCACTCCATGGTGTCAACCCAATCATCCTCTACATTGCT
AGAGGTGCATCAATTGCCTCCTTATCTGGAAAGAATGATATTGAGTTTGGGCATGTTGTT
GAATGGCTTGAATATGCCCCCACCTTCCTTTCAGGCTCTGAATTTGAAAATGCATGCTTA
TTTGTTGATGGATTCTTGGCCTCCCGGACCTTTCTGGTTGGTCATGGCCTGACAATTGCT
GACATTGCAGTTTGGTCAAATCTTGCTGGAATTGGTCAGCGGTGGGAGAGTCTAAGGAAA
TCAAAGAAATACCAAAATCTTGTTCGCTGGTTCAACAGCATAGATTCAGAATACAAAGAG
GCACTGAACGAAGTTGTGGCTGCATTTGTTGGGAAACGAGGTATTGGAAAATCTCCTGCA
CCTAGCCTTAAGGAGAAGGTACATGACTCAAAGGACCCATCAGCTCCAGAAGTTGATCTC
CCTGGTGCAAAAGTTGGGAAAGTCTGCGTTCGTTTTGCCCCAGAGCCTAGTGGTTACCTC
CATATTGGGCATGCAAAGGCTGCACTATTGAACAAATACTTTGCTGAAAGATATCAAGGG
CGCTTAATAGTTCGATTTGATGACACAAACCCTTCAAAAGAAAGCAATGAGTTTGTTGAG
AATCTTTTGAAAGATATTGAGACGTTGGGGATCAAATATGATGCTGTCACATACACATCT
GATTATTTCCCAAAGCTAATGGAAATGGCTGAGAGTTTGATAAAGCAGGGTAAAGCATAT
ATTGATGACACACCAAAGGAGCAAATGAGGAAAGAGAGGATGGACGGTATTGAGTCAAGG
TGCAGAAATAATACCGTGGAGGAAAATCTCTCATTATGGAAAGAGATGGTTAATGGAACT
GAAAGGGGCATGCAGTGCTGTGTACGGGGTAAACTTGACATGCAGGATCCTAACAAGTCA
CTCAGGGATCCTGTTTACTACCGCTGTAATACTGATCCACACCATCGTGTTGGTTCGAAG
TACAAGGTCTATCCAACATATGACTTTGCGTGCCCATTTGTCGATGCATTGGAGGGGGTA
ACCCATGCTCTTCGTTCCAGTGAATATCATGACAGAAATGCACAATATTATCGAATTCTT
CAAGACATGGGGTTGAGGAGAGTGGAAATTTATGAATTCAGCCGATTGAATATGGTTTAC
ACTCTTCTAAGCAAGCGAAAGCTTCTTTGGTTTGTACAAAACAAGAAGGTCGAAGATTGG
ACAGACCCACGTTTTCCCACTGTCCAAGGCATAGTACGTCGGGGCTTGAAGGTTGATGCA
TTGATACAGTTTATACTCCAACAGGGTGCTTCAAAAAATCTGAATCTCATGGAATGGGAT
AAACTCTGGACAATCAACAAGAAGATAATTGATCCAGTGTGCGCAAGGCATACTGCTGTG
CTAAAAGACCAGCGTGTCATCTTTACTCTTACAAATGGTCCAGAGGAGCCATTTGTTCGA
ATTTTACCAAGACATAAGAAATTTGAGGGTGCTGGAAAGAAGGCTACAACCTTTGCCAAC
AGAATTTGGCTCGATTATGCTGATGCGGCAGCTATTAGCAAGGGTGAGGAAGTAACCCTT
ATGGATTGGGGGAATGCTATTGTTAAAGAGATCAAGGTGGAGAGTGGAGTAATTACTGAA
CTAGTTGGAGAACTGCATCTTGAGGGGTCTGTGAAAACAACAAAATTGAAGATCACATGG
CTAGCAGATATAGAGGAGCTAGTTCCCCTTTCATTGGTTGAATTTGATTACCTCATCAGC
AAGAAAAAGCTAGAGGAAGACGAGGACTTCCTCGACAATCTCAACCCTTGCACTCGACGG
GAAATCCCAGCCCTTGGAGATGCGAACATGAGGAACATCAAGCGTGGAGAGGTCATACAG
CTCGAGAGGAAAGGCTACTATAGGTGTGATGCCCCTTTTATCAGATCGTCCAAACCG

Peptide Sequence

PEP ID

Zm00001d027612_P010
PEP Infomation

pep chromosome:B73_RefGen_v4:1:9009250:9012823:-1 gene:Zm00001d027612 transcript:Zm00001d027612_T010 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glutamate--tRNA ligase cytoplasmic
Sequence

MEAALSFSKDSPPISIICAAKIVGLPLTINHSLAAGSAPTLQFASGESLHGVNPIILYIA
RGASIASLSGKNDIEFGHVVEWLEYAPTFLSGSEFENACLFVDGFLASRTFLVGHGLTIA
DIAVWSNLAGIGQRWESLRKSKKYQNLVRWFNSIDSEYKEALNEVVAAFVGKRGIGKSPA
PSLKEKVHDSKDPSAPEVDLPGAKVGKVCVRFAPEPSGYLHIGHAKAALLNKYFAERYQG
RLIVRFDDTNPSKESNEFVENLLKDIETLGIKYDAVTYTSDYFPKLMEMAESLIKQGKAY
IDDTPKEQMRKERMDGIESRCRNNTVEENLSLWKEMVNGTERGMQCCVRGKLDMQDPNKS
LRDPVYYRCNTDPHHRVGSKYKVYPTYDFACPFVDALEGVTHALRSSEYHDRNAQYYRIL
QDMGLRRVEIYEFSRLNMVYTLLSKRKLLWFVQNKKVEDWTDPRFPTVQGIVRRGLKVDA
LIQFILQQGASKNLNLMEWDKLWTINKKIIDPVCARHTAVLKDQRVIFTLTNGPEEPFVR
ILPRHKKFEGAGKKATTFANRIWLDYADAAAISKGEEVTLMDWGNAIVKEIKVESGVITE
LVGELHLEGSVKTTKLKITWLADIEELVPLSLVEFDYLISKKKLEEDEDFLDNLNPCTRR
EIPALGDANMRNIKRGEVIQLERKGYYRCDAPFIRSSKP

Transcript Sequence

Transcript ID

Zm00001d027612_T010
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:9009250:9012823:-1 gene:Zm00001d027612 gene_biotype:protein_coding transcript_biotype:protein_coding description:Glutamate--tRNA ligase cytoplasmic
Sequence

CAGGTTCCTACCATTTTTAAGAAAAAAGATCAATGGAGGCAGCTTTGTCATTCTCCAAGG
ACAGCCCACCAATTTCGATAATTTGTGCTGCAAAGATTGTGGGTCTACCCCTAACCATCA
ATCATAGCCTCGCTGCTGGCTCGGCACCCACCCTACAGTTTGCTTCTGGAGAATCACTCC
ATGGTGTCAACCCAATCATCCTCTACATTGCTAGAGGTGCATCAATTGCCTCCTTATCTG
GAAAGAATGATATTGAGTTTGGGCATGTTGTTGAATGGCTTGAATATGCCCCCACCTTCC
TTTCAGGCTCTGAATTTGAAAATGCATGCTTATTTGTTGATGGATTCTTGGCCTCCCGGA
CCTTTCTGGTTGGTCATGGCCTGACAATTGCTGACATTGCAGTTTGGTCAAATCTTGCTG
GAATTGGTCAGCGGTGGGAGAGTCTAAGGAAATCAAAGAAATACCAAAATCTTGTTCGCT
GGTTCAACAGCATAGATTCAGAATACAAAGAGGCACTGAACGAAGTTGTGGCTGCATTTG
TTGGGAAACGAGGTATTGGAAAATCTCCTGCACCTAGCCTTAAGGAGAAGGTACATGACT
CAAAGGACCCATCAGCTCCAGAAGTTGATCTCCCTGGTGCAAAAGTTGGGAAAGTCTGCG
TTCGTTTTGCCCCAGAGCCTAGTGGTTACCTCCATATTGGGCATGCAAAGGCTGCACTAT
TGAACAAATACTTTGCTGAAAGATATCAAGGGCGCTTAATAGTTCGATTTGATGACACAA
ACCCTTCAAAAGAAAGCAATGAGTTTGTTGAGAATCTTTTGAAAGATATTGAGACGTTGG
GGATCAAATATGATGCTGTCACATACACATCTGATTATTTCCCAAAGCTAATGGAAATGG
CTGAGAGTTTGATAAAGCAGGGTAAAGCATATATTGATGACACACCAAAGGAGCAAATGA
GGAAAGAGAGGATGGACGGTATTGAGTCAAGGTGCAGAAATAATACCGTGGAGGAAAATC
TCTCATTATGGAAAGAGATGGTTAATGGAACTGAAAGGGGCATGCAGTGCTGTGTACGGG
GTAAACTTGACATGCAGGATCCTAACAAGTCACTCAGGGATCCTGTTTACTACCGCTGTA
ATACTGATCCACACCATCGTGTTGGTTCGAAGTACAAGGTCTATCCAACATATGACTTTG
CGTGCCCATTTGTCGATGCATTGGAGGGGGTAACCCATGCTCTTCGTTCCAGTGAATATC
ATGACAGAAATGCACAATATTATCGAATTCTTCAAGACATGGGGTTGAGGAGAGTGGAAA
TTTATGAATTCAGCCGATTGAATATGGTTTACACTCTTCTAAGCAAGCGAAAGCTTCTTT
GGTTTGTACAAAACAAGAAGGTCGAAGATTGGACAGACCCACGTTTTCCCACTGTCCAAG
GCATAGTACGTCGGGGCTTGAAGGTTGATGCATTGATACAGTTTATACTCCAACAGGGTG
CTTCAAAAAATCTGAATCTCATGGAATGGGATAAACTCTGGACAATCAACAAGAAGATAA
TTGATCCAGTGTGCGCAAGGCATACTGCTGTGCTAAAAGACCAGCGTGTCATCTTTACTC
TTACAAATGGTCCAGAGGAGCCATTTGTTCGAATTTTACCAAGACATAAGAAATTTGAGG
GTGCTGGAAAGAAGGCTACAACCTTTGCCAACAGAATTTGGCTCGATTATGCTGATGCGG
CAGCTATTAGCAAGGGTGAGGAAGTAACCCTTATGGATTGGGGGAATGCTATTGTTAAAG
AGATCAAGGTGGAGAGTGGAGTAATTACTGAACTAGTTGGAGAACTGCATCTTGAGGGGT
CTGTGAAAACAACAAAATTGAAGATCACATGGCTAGCAGATATAGAGGAGCTAGTTCCCC
TTTCATTGGTTGAATTTGATTACCTCATCAGCAAGAAAAAGCTAGAGGAAGACGAGGACT
TCCTCGACAATCTCAACCCTTGCACTCGACGGGAAATCCCAGCCCTTGGAGATGCGAACA
TGAGGAACATCAAGCGTGGAGAGGTCATACAGCTCGAGAGGAAAGGCTACTATAGGTGTG
ATGCCCCTTTTATCAGATCGTCCAAACCGGT