Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d027558_T018
CDS Infomation

cds chromosome:B73_RefGen_v4:1:8152708:8159720:-1 gene:Zm00001d027558 gene_biotype:protein_coding transcript_biotype:protein_coding description:Aconitate hydratase 1
Sequence

ATGAAGTCTGATTGGCTTTCTTGCTTGGACAGCGATGTAGGATTCAAGGGTTTTGCTGTC
CCCAAAGAATCACAGGGCAAAGTTGCAGAATTTTCGTTCCATGGGACTCCTGCAAAGATA
AAGCATGGTGATGTTGTAATTGCAGCAATTACCAGTTGCACAAACACATCAAATCCTAAT
GTAATGCTGGGAGCTGCTTTGGTTGCCAAGAAGGCTTGTGAGTTGGGCCTGGAGGTAAAG
CCATGGATTAAGACGAGCCTTGCACCTGGTTCCGGTGTTGTGAAGAAGTACTTGGATAAG
AGTGGTTTGCAGAAATATCTCGACCAGCTTGGCTTTCATATTGTTGGCTATGGTTGCACA
ACCTGCATTGGAAATTCTGGAGAGCTTGATGAATCTGTGTCTGCTGCAATTACTGAGAAT
GATATTGTTGCTGCTGCTGTGTTGTCTGGAAACAGAAATTTTGAAGGACGTGTGCATCCT
TTAACCAGAGCAAATTACCTTGCTTCCCCTCCTTTAGTTGTGGCTTATGCATTGGCTGGC
ACAGTTAATATTGATTTTGAGAAAGAACCTATTGGCATCTCGAAAGATGGAAAAGAGGTT
TACTTCCGGGATGTTTGGCCATCCACAGAAGAGATAGCCGAGGTTGTCAAGTCAAGTGTG
CTCCCTGACATGTTCAAGAGCACATATGAGTCAATCACCAAAGGAAATCCTATGTGGAAT
GAGCTGCCAGTCTCAACAAGCACTCTCTACCCCTGGGATCCATCATCTACATACATCCAT
GAGCCACCTTACTTCAAGGATATGAAAATGAGTCCTCCTGGCCCGCGGCCTGTGAAGGAT
GCATATTGCCTTTTGAATTTTGGTGACAGCATCACAACCGATCACATCTCACCTGCCGGA
AACATTCACCCAGACAGCCCAGCTGCAAAATATCTGAAGGAGCGTGGCGTTGAAAGGAAG
GACTTCAACTCATATGGTAGCCGAAGAGGAAATGATGAGATCATGGCTAGGGGAACCTTT
GCCAACATTCGTCTTGTGAATAAGTTCTTGAAGGGTGAGGTTGGACCCAAGACAATCCAT
GTTCCATCTGGGGAGAAGCTTGCAGTTTTTGATGCTGCTATGAAATACAAGAATGAAGGG
CATGACACTATTATCCTGGCTGGTGCCGAGTACGGGAGTGGAAGCTCTCGGGATTGGGCT
GCAAAGGGCCCAATGCTGCAGGGAGTGAAGGCTGTGATAGCAAAGAGCTTCGAGAGGATT
CACCGCAGCAATCTTGCTGGCATGGGAATCATCCCTCTATGCTACAAAGCAGGGGAGGAT
GCAGACACCCTGGGCCTAACCGGCCATGAGCGCTACACGGTCCACCTTCCAACCAATGTG
AGTGAGATCAAGCCTGGCCAAGATGTTACCGTGACAACTGATAATGGAAAGTCGTTCACT
TGCACACTCAGATTCGACACTGAGGTGGAGCTTGCTTACTACGATCATGGTGGCATTCTA
CCATATGTCGCTAGAAAGATAGCGGAACAATAG

Peptide Sequence

PEP ID

Zm00001d027558_P018
PEP Infomation

pep chromosome:B73_RefGen_v4:1:8152708:8159720:-1 gene:Zm00001d027558 transcript:Zm00001d027558_T018 gene_biotype:protein_coding transcript_biotype:protein_coding description:Aconitate hydratase 1
Sequence

MKSDWLSCLDSDVGFKGFAVPKESQGKVAEFSFHGTPAKIKHGDVVIAAITSCTNTSNPN
VMLGAALVAKKACELGLEVKPWIKTSLAPGSGVVKKYLDKSGLQKYLDQLGFHIVGYGCT
TCIGNSGELDESVSAAITENDIVAAAVLSGNRNFEGRVHPLTRANYLASPPLVVAYALAG
TVNIDFEKEPIGISKDGKEVYFRDVWPSTEEIAEVVKSSVLPDMFKSTYESITKGNPMWN
ELPVSTSTLYPWDPSSTYIHEPPYFKDMKMSPPGPRPVKDAYCLLNFGDSITTDHISPAG
NIHPDSPAAKYLKERGVERKDFNSYGSRRGNDEIMARGTFANIRLVNKFLKGEVGPKTIH
VPSGEKLAVFDAAMKYKNEGHDTIILAGAEYGSGSSRDWAAKGPMLQGVKAVIAKSFERI
HRSNLAGMGIIPLCYKAGEDADTLGLTGHERYTVHLPTNVSEIKPGQDVTVTTDNGKSFT
CTLRFDTEVELAYYDHGGILPYVARKIAEQ

Transcript Sequence

Transcript ID

Zm00001d027558_T018
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:8152708:8159720:-1 gene:Zm00001d027558 gene_biotype:protein_coding transcript_biotype:protein_coding description:Aconitate hydratase 1
Sequence

AGGTTGACGCTGAAAGGGTATACTCTTCCTATCTAGAACTTAACTTGGAAGAGGTAGAAC
CATGTCTATCAGGACCAAAACGGCCTCATGATCGAGTGACATTGAAGAATATGAAGTCTG
ATTGGCTTTCTTGCTTGGACAGCGATGTAGGATTCAAGGGTTTTGCTGTCCCCAAAGAAT
CACAGGGCAAAGTTGCAGAATTTTCGTTCCATGGGACTCCTGCAAAGATAAAGCATGGTG
ATGTTGTAATTGCAGCAATTACCAGTTGCACAAACACATCAAATCCTAATGTAATGCTGG
GAGCTGCTTTGGTTGCCAAGAAGGCTTGTGAGTTGGGCCTGGAGGTAAAGCCATGGATTA
AGACGAGCCTTGCACCTGGTTCCGGTGTTGTGAAGAAGTACTTGGATAAGAGTGGTTTGC
AGAAATATCTCGACCAGCTTGGCTTTCATATTGTTGGCTATGGTTGCACAACCTGCATTG
GAAATTCTGGAGAGCTTGATGAATCTGTGTCTGCTGCAATTACTGAGAATGATATTGTTG
CTGCTGCTGTGTTGTCTGGAAACAGAAATTTTGAAGGACGTGTGCATCCTTTAACCAGAG
CAAATTACCTTGCTTCCCCTCCTTTAGTTGTGGCTTATGCATTGGCTGGCACAGTTAATA
TTGATTTTGAGAAAGAACCTATTGGCATCTCGAAAGATGGAAAAGAGGTTTACTTCCGGG
ATGTTTGGCCATCCACAGAAGAGATAGCCGAGGTTGTCAAGTCAAGTGTGCTCCCTGACA
TGTTCAAGAGCACATATGAGTCAATCACCAAAGGAAATCCTATGTGGAATGAGCTGCCAG
TCTCAACAAGCACTCTCTACCCCTGGGATCCATCATCTACATACATCCATGAGCCACCTT
ACTTCAAGGATATGAAAATGAGTCCTCCTGGCCCGCGGCCTGTGAAGGATGCATATTGCC
TTTTGAATTTTGGTGACAGCATCACAACCGATCACATCTCACCTGCCGGAAACATTCACC
CAGACAGCCCAGCTGCAAAATATCTGAAGGAGCGTGGCGTTGAAAGGAAGGACTTCAACT
CATATGGTAGCCGAAGAGGAAATGATGAGATCATGGCTAGGGGAACCTTTGCCAACATTC
GTCTTGTGAATAAGTTCTTGAAGGGTGAGGTTGGACCCAAGACAATCCATGTTCCATCTG
GGGAGAAGCTTGCAGTTTTTGATGCTGCTATGAAATACAAGAATGAAGGGCATGACACTA
TTATCCTGGCTGGTGCCGAGTACGGGAGTGGAAGCTCTCGGGATTGGGCTGCAAAGGGCC
CAATGCTGCAGGGAGTGAAGGCTGTGATAGCAAAGAGCTTCGAGAGGATTCACCGCAGCA
ATCTTGCTGGCATGGGAATCATCCCTCTATGCTACAAAGCAGGGGAGGATGCAGACACCC
TGGGCCTAACCGGCCATGAGCGCTACACGGTCCACCTTCCAACCAATGTGAGTGAGATCA
AGCCTGGCCAAGATGTTACCGTGACAACTGATAATGGAAAGTCGTTCACTTGCACACTCA
GATTCGACACTGAGGTGGAGCTTGCTTACTACGATCATGGTGGCATTCTACCATATGTCG
CTAGAAAGATAGCGGAACAATAGATTGTACCGTCGAGATGGTTGCGATGCTTGCGGTGAA
TCGTAATTGGTGTAAACGGTTTGTTTAGTAGTACAACCCATTTTTGCGG