Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d027537_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:1:7714226:7716606:-1 gene:Zm00001d027537 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cytochrome P450 CYP78A55

Sequence

ATGGAGAGATCAGCTGAGAGCTGGTGGGTGCTTCCCATGACCTTGATACCGGCCATCTCC
GGCGAGCAACACGGTAACATGGCAACCGTAGCCACTAGCTTCGCCTACCTCGCCATCTTC
GCATGCCTCGCATGGGTGGGCGCGTCCCTGCTCTACTGGGCTCACCCAGGCGGCCCTGCG
TGGGGCAAGTACTGGAGGGCGAGGGGGAAGAAGCCGTCGGCGGCGATCCCGGGGCCTAAG
GGGCTCCCGGTGGTCGGCAGCCTCGGCCTCATGTCCGGGCTGGCGCACCGCTCGCTGGCC
GACGAGGCGTCGCGCCGCCCGGGGGCCAAGCGGCTCATGGCGCTGTCGCTCGGCCCCGTC
CGCGCGGTCGTCACGTCCCACCCGGACGTGGCCAAGGAGATCCTTGATAGCCCGGCGTTC
GCCGCCCGCCCCCTGAACCACGCCGCGTACGGCCTCATGTTCCACCGCTCCATCGGCTTC
GCCGAGCACGGCCCGTACTGGCGCGCGCTCCGGCGCGTCGCCGCGGGCCACCTGTTCGGC
CCGAGGCAGGTCGAAGCCTTCGCGCCGTACCGCGCGGCCGTCGCCGAGGGCATCGTCGCG
GCCCTGCTGCGCGCCGGCTCCGGCGGCGCCGTCGTCCAGGTGCGCGGCCTCCTGCGGCGG
GCGTCGCTCTACTACATCATGCGGTTCGTGTTCGGCAAGGAGTACGACGTGTCACGCGTG
GTGCCGCCGTCCGGCGGGGAGGAGGTGGAGGAGCTGCTCGAGATGGTGCACGAGGGGTAC
GAGCTCCTGGGCATGGAGAACCTGTGCGACTACTTCCCGGGGCTCGCCGCCCTCGACCCG
CAGGGCGTGGGCGCACGATGCGCCGAGCTCATGCCGCGGGTGAACCGGTTCGTGCACGGC
GTCATCCAGGAGCACCGTGCCAAGGCGGTCGCCGGTGGAGACGCGCGTGACTTCGTCGAC
ATCTTGCTCTCCCTGCAGGAGAGTGAGGGGCTCGCCGACGCCGACATAGCCTCTGTGCTC
TGGGAGATGATCTTCAGAGGAACGGACGCCATGGCGGTGCTCATGGAGTGGACCCTAGCT
CGCCTCGTCCTCCACCGCGACGTCCAAGCCAAGGCGCACCGTGAGCTCGACAAGGTCGTC
GGCGCGGACAGCCAGACCACCGAGTCCGCGGCGCCGTACCTGCAGGCGTTGCTAAAGGAG
GCTCTCCGGATGCACCCGCCGGGGCCCCTCCTGTCGTGGCGCCACAGGGCCATATCCGAC
ACGTACGTCGACGGCCACCTCGTCCCGGCGGGCACCACGGCCATGGTGAACCAGTGGGCC
ATCAGCCGCGACCCCGAGGTGTGGGACGCGCCGCTCGAGTTCCGGCCCGAGCGGTTCCTC
CCCGGCGGCGAGGGCCAGGACGTGTCCGTGCTCGGCGCCGACGGCCGCCTCGTGCCGTTC
GGGTCCGGCAGGAGGAGCTGCCCCGGAAAGTCCCTGGCCATGACCACCGTGACCTCCTGG
ATGGCCACGCTGCTGCACGAGTTCGAGTGGCTGCCAGCGTCAGACGACACAGGCGACGTC
GACCTCTCGGAGGTGCTCCGTCTGTCCTGCGAGATGGCAGTGCCGCTGGAGGTCCGCGTG
CGCCCGAGGAGCAGCGTGTGA

Peptide Sequence

PEP ID

Zm00001d027537_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:1:7714226:7716606:-1 gene:Zm00001d027537 transcript:Zm00001d027537_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cytochrome P450 CYP78A55

Sequence

MERSAESWWVLPMTLIPAISGEQHGNMATVATSFAYLAIFACLAWVGASLLYWAHPGGPA
WGKYWRARGKKPSAAIPGPKGLPVVGSLGLMSGLAHRSLADEASRRPGAKRLMALSLGPV
RAVVTSHPDVAKEILDSPAFAARPLNHAAYGLMFHRSIGFAEHGPYWRALRRVAAGHLFG
PRQVEAFAPYRAAVAEGIVAALLRAGSGGAVVQVRGLLRRASLYYIMRFVFGKEYDVSRV
VPPSGGEEVEELLEMVHEGYELLGMENLCDYFPGLAALDPQGVGARCAELMPRVNRFVHG
VIQEHRAKAVAGGDARDFVDILLSLQESEGLADADIASVLWEMIFRGTDAMAVLMEWTLA
RLVLHRDVQAKAHRELDKVVGADSQTTESAAPYLQALLKEALRMHPPGPLLSWRHRAISD
TYVDGHLVPAGTTAMVNQWAISRDPEVWDAPLEFRPERFLPGGEGQDVSVLGADGRLVPF
GSGRRSCPGKSLAMTTVTSWMATLLHEFEWLPASDDTGDVDLSEVLRLSCEMAVPLEVRV
RPRSSV

Transcript Sequence

Transcript ID

Zm00001d027537_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:7714226:7716606:-1 gene:Zm00001d027537 gene_biotype:protein_coding transcript_biotype:protein_coding description:Cytochrome P450 CYP78A55

Sequence

ACAGCACAAACGCAACGCGACGCACCAAGCTCTGAGAGTCGCAATGGAGAGATCAGCTGA
GAGCTGGTGGGTGCTTCCCATGACCTTGATACCGGCCATCTCCGGCGAGCAACACGGTAA
CATGGCAACCGTAGCCACTAGCTTCGCCTACCTCGCCATCTTCGCATGCCTCGCATGGGT
GGGCGCGTCCCTGCTCTACTGGGCTCACCCAGGCGGCCCTGCGTGGGGCAAGTACTGGAG
GGCGAGGGGGAAGAAGCCGTCGGCGGCGATCCCGGGGCCTAAGGGGCTCCCGGTGGTCGG
CAGCCTCGGCCTCATGTCCGGGCTGGCGCACCGCTCGCTGGCCGACGAGGCGTCGCGCCG
CCCGGGGGCCAAGCGGCTCATGGCGCTGTCGCTCGGCCCCGTCCGCGCGGTCGTCACGTC
CCACCCGGACGTGGCCAAGGAGATCCTTGATAGCCCGGCGTTCGCCGCCCGCCCCCTGAA
CCACGCCGCGTACGGCCTCATGTTCCACCGCTCCATCGGCTTCGCCGAGCACGGCCCGTA
CTGGCGCGCGCTCCGGCGCGTCGCCGCGGGCCACCTGTTCGGCCCGAGGCAGGTCGAAGC
CTTCGCGCCGTACCGCGCGGCCGTCGCCGAGGGCATCGTCGCGGCCCTGCTGCGCGCCGG
CTCCGGCGGCGCCGTCGTCCAGGTGCGCGGCCTCCTGCGGCGGGCGTCGCTCTACTACAT
CATGCGGTTCGTGTTCGGCAAGGAGTACGACGTGTCACGCGTGGTGCCGCCGTCCGGCGG
GGAGGAGGTGGAGGAGCTGCTCGAGATGGTGCACGAGGGGTACGAGCTCCTGGGCATGGA
GAACCTGTGCGACTACTTCCCGGGGCTCGCCGCCCTCGACCCGCAGGGCGTGGGCGCACG
ATGCGCCGAGCTCATGCCGCGGGTGAACCGGTTCGTGCACGGCGTCATCCAGGAGCACCG
TGCCAAGGCGGTCGCCGGTGGAGACGCGCGTGACTTCGTCGACATCTTGCTCTCCCTGCA
GGAGAGTGAGGGGCTCGCCGACGCCGACATAGCCTCTGTGCTCTGGGAGATGATCTTCAG
AGGAACGGACGCCATGGCGGTGCTCATGGAGTGGACCCTAGCTCGCCTCGTCCTCCACCG
CGACGTCCAAGCCAAGGCGCACCGTGAGCTCGACAAGGTCGTCGGCGCGGACAGCCAGAC
CACCGAGTCCGCGGCGCCGTACCTGCAGGCGTTGCTAAAGGAGGCTCTCCGGATGCACCC
GCCGGGGCCCCTCCTGTCGTGGCGCCACAGGGCCATATCCGACACGTACGTCGACGGCCA
CCTCGTCCCGGCGGGCACCACGGCCATGGTGAACCAGTGGGCCATCAGCCGCGACCCCGA
GGTGTGGGACGCGCCGCTCGAGTTCCGGCCCGAGCGGTTCCTCCCCGGCGGCGAGGGCCA
GGACGTGTCCGTGCTCGGCGCCGACGGCCGCCTCGTGCCGTTCGGGTCCGGCAGGAGGAG
CTGCCCCGGAAAGTCCCTGGCCATGACCACCGTGACCTCCTGGATGGCCACGCTGCTGCA
CGAGTTCGAGTGGCTGCCAGCGTCAGACGACACAGGCGACGTCGACCTCTCGGAGGTGCT
CCGTCTGTCCTGCGAGATGGCAGTGCCGCTGGAGGTCCGCGTGCGCCCGAGGAGCAGCGT
GTGAATGAAGTGCTGCCTGCCGATAGCCATGACACACCCCCATTGTGCAATGTGTAGCAG
TGAGCCTAAGCGTTCTGTTAGTGAACTGTGAATAAGCAGCTGGTGAGGACTGTGCACACC
AGCTCAGCTCAGCCTTTGGTTCAGGGTTTCAACTTGCCCGTGTATATCGTATATTTAGTG
TGACCGTGAGTATTAAGTTATCCGCAAAAGGTGTACAAATCACAAAAGCTATCGAATGAA
GATTGTGTGAAGTGGTGTCATATA