Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d027488_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:1:6407153:6409815:1 gene:Zm00001d027488 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:glyceraldehyde phosphate dehydrogenase B1 description: glyceraldehyde phosphate dehydrogenase B1
Sequence

ATGGCCACCCACGCAGCTCTCGCCGCCTCCCGCATCCCCGCCGGCGCCCGGCTGCACAGC
AGGGCGCCGGCGTCGTCCAGGCACGGCGTGCAGAGGCTGGACTTCGCCGACTTCTCCGGG
CTCAGGCCGGGGTCGTGCTCCGTGAGCGCTGCCGCGCGGGAGGCGTCCTTCTCCGACGTC
CTTGGCGCGCAGCTCGTCGCCAAGGCCACCGGGGAGAACGCCGTGAGGGCGCCCGCAGAG
GCGAAGCTGAAGGTGGCGATCAACGGCTTCGGCCGCATCGGCCGGAACTTCCTCCGGTGC
TGGCACGGCCGCGAGGACTCGCCGATCGACGTCGTCGTCGTGAACGACAGCGGAGGCGTC
AGGAACGCGTCCCACCTCCTCAAGTACGACTCGATGCTCGGCACCTTCAAGGCCGACGTC
AAGATCGTGGACGACACGACCATCAGCGTCGACGGCAAGCCCATCACGGTCGTCTCCAGC
AGGGACCCGCTCAAGCTCCCATGGGGTGAGCTCGGCATTGACATCGTCATCGAGGGCACC
GGAGTCTTCGTCGACGGCCCCGGCGCCGGCAAGCACATCCAGGCCGGCGCGAAGAAGGTG
ATCATCACGGCTCCCGCCAAGGGCGCCGACATCCCGACCTATGTCGTCGGCGTCAACGAG
GGCGACTACGACCACAGCGTCGCCGACATCATCAGCAACGCGTCCTGCACGACCAACTGC
CTCGCGCCATTCGTCAAGATCTTGGACGAGGAGTTCGGAATCGTGAAGGGGACCATGACG
ACGACGCACTCGTACACCGGCGACCAGAGGCTGCTGGACGCGTCCCACCGCGACCTCCGG
CGGGCCCGCGCGGCGGCGCTGAACATCGTGCCGACGAGCACGGGCGCCGCCAAGGCCGTG
GCGCTGGTGCTGCCGCAGCTCAAGGGGAAGCTGAACGGCATCGCGCTGCGGGTGCCGACC
CCGAACGTGTCCGTGGTGGACCTGGTGATCAACACCGTGAAGACTGGCATCACGGCCGAC
GACGTGAACGCGGCGTTCCGCAAGGCCGCCGCCGGCCCGCTGCAGGGCATCCTGGAGGTC
TGCGACGTGCCGCTCGTGTCCGTCGACTTCAGGTGCTCCGACGTGTCCTGCACCATCGAC
GCGTCGCTCAGCATGGTCATGGGCGACGACATGGTCAAGGTCGTCGCCTGGTACGACAAC
GAGTGGGGGTACAGCCAACGCGTGGTTGATCTGGCGCACCTGGTGGCGGCCAAGTGGCCC
GGCGCGGCGGCGGCCGGCAGCGGCGACCCTCTGGAGGACTTCTGCAAGGACAACCCCGAG
ACCGACGAGTGCAAGGTGTACGAAGCATGA

Peptide Sequence

PEP ID

Zm00001d027488_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:1:6407153:6409815:1 gene:Zm00001d027488 transcript:Zm00001d027488_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:glyceraldehyde phosphate dehydrogenase B1 description: glyceraldehyde phosphate dehydrogenase B1
Sequence

MATHAALAASRIPAGARLHSRAPASSRHGVQRLDFADFSGLRPGSCSVSAAAREASFSDV
LGAQLVAKATGENAVRAPAEAKLKVAINGFGRIGRNFLRCWHGREDSPIDVVVVNDSGGV
RNASHLLKYDSMLGTFKADVKIVDDTTISVDGKPITVVSSRDPLKLPWGELGIDIVIEGT
GVFVDGPGAGKHIQAGAKKVIITAPAKGADIPTYVVGVNEGDYDHSVADIISNASCTTNC
LAPFVKILDEEFGIVKGTMTTTHSYTGDQRLLDASHRDLRRARAAALNIVPTSTGAAKAV
ALVLPQLKGKLNGIALRVPTPNVSVVDLVINTVKTGITADDVNAAFRKAAAGPLQGILEV
CDVPLVSVDFRCSDVSCTIDASLSMVMGDDMVKVVAWYDNEWGYSQRVVDLAHLVAAKWP
GAAAAGSGDPLEDFCKDNPETDECKVYEA

Transcript Sequence

Transcript ID

Zm00001d027488_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:6407153:6409815:1 gene:Zm00001d027488 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:glyceraldehyde phosphate dehydrogenase B1 description: glyceraldehyde phosphate dehydrogenase B1
Sequence

AAGCCGCCACACATCGGATATCGCCCGCCCGAACGGGTGGCTGCGGCGCATGCAATCGCC
TTATCCCCCCGGCCCGCCGCCCCGCGGCCACAAGCGCAAGCAGTGAACACGGCGCCTCCT
CGCTCGCGCGGCCACGCCCCCGTCGTCGTCTTCTCCCGGCAGGTACTACAGCGCATAAAT
ACGCAGCACCGCCGCCCGGCTCGGTTCCCGTCTGGCCACCCATCCGATCCCACCCGGCAG
CGGCGCTGCGCAATGGCCACCCACGCAGCTCTCGCCGCCTCCCGCATCCCCGCCGGCGCC
CGGCTGCACAGCAGGGCGCCGGCGTCGTCCAGGCACGGCGTGCAGAGGCTGGACTTCGCC
GACTTCTCCGGGCTCAGGCCGGGGTCGTGCTCCGTGAGCGCTGCCGCGCGGGAGGCGTCC
TTCTCCGACGTCCTTGGCGCGCAGCTCGTCGCCAAGGCCACCGGGGAGAACGCCGTGAGG
GCGCCCGCAGAGGCGAAGCTGAAGGTGGCGATCAACGGCTTCGGCCGCATCGGCCGGAAC
TTCCTCCGGTGCTGGCACGGCCGCGAGGACTCGCCGATCGACGTCGTCGTCGTGAACGAC
AGCGGAGGCGTCAGGAACGCGTCCCACCTCCTCAAGTACGACTCGATGCTCGGCACCTTC
AAGGCCGACGTCAAGATCGTGGACGACACGACCATCAGCGTCGACGGCAAGCCCATCACG
GTCGTCTCCAGCAGGGACCCGCTCAAGCTCCCATGGGGTGAGCTCGGCATTGACATCGTC
ATCGAGGGCACCGGAGTCTTCGTCGACGGCCCCGGCGCCGGCAAGCACATCCAGGCCGGC
GCGAAGAAGGTGATCATCACGGCTCCCGCCAAGGGCGCCGACATCCCGACCTATGTCGTC
GGCGTCAACGAGGGCGACTACGACCACAGCGTCGCCGACATCATCAGCAACGCGTCCTGC
ACGACCAACTGCCTCGCGCCATTCGTCAAGATCTTGGACGAGGAGTTCGGAATCGTGAAG
GGGACCATGACGACGACGCACTCGTACACCGGCGACCAGAGGCTGCTGGACGCGTCCCAC
CGCGACCTCCGGCGGGCCCGCGCGGCGGCGCTGAACATCGTGCCGACGAGCACGGGCGCC
GCCAAGGCCGTGGCGCTGGTGCTGCCGCAGCTCAAGGGGAAGCTGAACGGCATCGCGCTG
CGGGTGCCGACCCCGAACGTGTCCGTGGTGGACCTGGTGATCAACACCGTGAAGACTGGC
ATCACGGCCGACGACGTGAACGCGGCGTTCCGCAAGGCCGCCGCCGGCCCGCTGCAGGGC
ATCCTGGAGGTCTGCGACGTGCCGCTCGTGTCCGTCGACTTCAGGTGCTCCGACGTGTCC
TGCACCATCGACGCGTCGCTCAGCATGGTCATGGGCGACGACATGGTCAAGGTCGTCGCC
TGGTACGACAACGAGTGGGGGTACAGCCAACGCGTGGTTGATCTGGCGCACCTGGTGGCG
GCCAAGTGGCCCGGCGCGGCGGCGGCCGGCAGCGGCGACCCTCTGGAGGACTTCTGCAAG
GACAACCCCGAGACCGACGAGTGCAAGGTGTACGAAGCATGAGGCCAGGGTTCTTTCCAC
GACGAAACGTACAGCACGGGCGCGAGGGTTCTTTCCATAGAGAATAATATACAGATTATT
CGACGAAAGAGACGTATGTTATATATATATATGAGTTGTATGCAGTCACCGAACTGGCGG
TACAGGCTTCCGCTTTCCATTTCCTGTTGGGAGTCGTGTAGTGTAATCCTGGGGTGTGTA
TTTGTTTCATCAACCATGCCTGCCGATTTGAATCTCGTTTCACCAGCATGGCAGCATTAT
CTGATTTGGGTATACAAGTATAAACCGCAACGAGCGATCTTGT