Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d027487_T029
CDS Infomation

cds chromosome:B73_RefGen_v4:1:6319360:6328739:-1 gene:Zm00001d027487 gene_biotype:protein_coding transcript_biotype:protein_coding description:Exosome complex exonuclease RRP44 homolog A
Sequence

ATGGCAGCCTTCTCTTTCATTTGCCATTATATGTTCACCTTTTACTCAAAAAACAGGGAT
ACTTACGTCAAAGACATGGTTGGGGAGAGCTCTAATGATCGTAATGACAGAGCAATTCGT
GTTGCTGCACGTTGGTACCAAAGTCATCTTGGTGAGAGCGTGAAGGTTCTACTGATCACA
AATGACAGAGATAACAAAAGGAAAGCGATTGAAGAAGGCCTTAACGCTGAGACAGTTGAG
TCATATGTAAGATCGCTTGCACAGCCTGGTTTGCTTGATTTGGTTGTTGTTCCAACTAGC
GGAGATGTTTCTATGGAAGATGTAGACGATCATAGACCATCAAAGAAGAAAGTAATCTAC
AATGAGCACAAACCTATGTCAGAAATTACATCTGGTTTGCGGTGTGGAATCTACCATCAA
GGGAAGCTTCGAGTTAATCGTTACAATCCGTTTGAAGCTTATGTTGGAAGCGAGAGCATT
GGTGATGAGATTGTTATCCGTGGCCGCTCAAATATGAACAGGGCCTTTGATGGTGATATA
GTTGCTGTTGAGCTCTTGCCACAAGATCAATGGCACGAGTCAAAGTCTTTTATAGCAGAT
GATGATGAAGAAGAAGAAGAAGATGTTCATTTAGTCCCTAATAGTGCTGATGATGCTCCT
CGGAACACTAATTCCACACAATCAACAGTTGGATCATCAGCTCCTTCCATTTCTAGTCGT
CCAGTTGGGCGTGTTATGGGTATAATCAAGCGAAATTGGAATTCGTACTGTGGATCCTTG
CAGCCGATGCCCATGCCTGCTGGTAGTGGGGGTGTCGCTCATGCTTTATTTGTTTCAAAA
GATCGAAGAGTTCCTAAGATTCGAATTCAAACCAGGCAGCTTGAGAATCTTGTGAACAAA
AGAATTGTTGTCGCGGTTGATTCATGGGATGTTTTGTCTCGATATCCATCAGGACACTAT
GTACGAACCATTGGAGATATTGGTGACAAAGAAACTGAAACAGAGGTTGTCTTAATAGAG
AATGATATCAACACCAGGCCTTTCTCTACACAAGTCCTTGCTTGTTTGCCACCTTTACCT
TGGACATTATCACCAGAAGATCTGGCTAATCCTAATAGACAAGACTTACGCCAAGTGAGA
GTCTTTAGTGTGGATCCACCAGGTTGTCGAGACATTGATGATGCACTACATTGCACACTA
CTTCCAAATGGGAACTTTGAAGTTGGAGTTCATATCGCTGATGTCACTAATTTTGTTCAC
CCTGGTACCCCTCTTGATGAGGAAGCTGCGCAAAGGGGCACTTCTGTTTATCTTGTTGGG
CAGCGGATTGATATGCTTCCAAAGCCCCTGACTGAAGATGTTTGTTCACTTCGTGCTGAT
GTTGAACGGTTGGCATTCTCTGTCATTTGGGAAATGACTCCGGATGCTGATGTTATATCA
ACGAGATATACAAAGAGTGTTATCAAATCTTGTGCTGCAATGTCTTATGTTGAAGCCCAG
GCAAGAATGGATGACAGCCGCTTAGTTGATCCACTAACTGTAGACTTGCGGAACTTAAAT
TCATTGGCAAAGATCATGCGACAACGCCGTTGTGAAAGAGGGGCTTTGACTCTTGCTTCT
GCAGAAGTAAAATTTGAGATTGATAGTGAAACTCATGATCCTCTTGACATAGGAATTTAT
CAAATCCGTGAGGCAAATCAAATGATTGAAGAATTTATGTTGGCTGCAAATGTTTCTGTT
GCTGAGAAGATTTTGAAGCATTTCCCCTTATGTTCATTGCTAAGGCGCCATCCTAGCCCA
ACAAAAGAGATGCTTGAGCCATTACTCCGTACTGCCTCTTCGATTGGCCTAAATCTGGAC
GTGTCATCCTCAAAGGCATTAGCTGAATCACTTGACAACGCAAAGAGCAATGACCCATAC
TTCAACAAGCTTATTAGAATTTTGGCGACTAGATGCATGACACAGGCTGTTTATTTCTGC
AGTGGAGATTTGACCTTTTCTGAATATTACCATTATGGGCTTGCTGCTTCTCTTTACACT
CATTTCACTTCTCCCATTCGCAGATATGCAGGTTTGTTTCCCATCCTTAGATGCTCTGAT
GCATGA

Peptide Sequence

PEP ID

Zm00001d027487_P029
PEP Infomation

pep chromosome:B73_RefGen_v4:1:6319360:6328739:-1 gene:Zm00001d027487 transcript:Zm00001d027487_T029 gene_biotype:protein_coding transcript_biotype:protein_coding description:Exosome complex exonuclease RRP44 homolog A
Sequence

MAAFSFICHYMFTFYSKNRDTYVKDMVGESSNDRNDRAIRVAARWYQSHLGESVKVLLIT
NDRDNKRKAIEEGLNAETVESYVRSLAQPGLLDLVVVPTSGDVSMEDVDDHRPSKKKVIY
NEHKPMSEITSGLRCGIYHQGKLRVNRYNPFEAYVGSESIGDEIVIRGRSNMNRAFDGDI
VAVELLPQDQWHESKSFIADDDEEEEEDVHLVPNSADDAPRNTNSTQSTVGSSAPSISSR
PVGRVMGIIKRNWNSYCGSLQPMPMPAGSGGVAHALFVSKDRRVPKIRIQTRQLENLVNK
RIVVAVDSWDVLSRYPSGHYVRTIGDIGDKETETEVVLIENDINTRPFSTQVLACLPPLP
WTLSPEDLANPNRQDLRQVRVFSVDPPGCRDIDDALHCTLLPNGNFEVGVHIADVTNFVH
PGTPLDEEAAQRGTSVYLVGQRIDMLPKPLTEDVCSLRADVERLAFSVIWEMTPDADVIS
TRYTKSVIKSCAAMSYVEAQARMDDSRLVDPLTVDLRNLNSLAKIMRQRRCERGALTLAS
AEVKFEIDSETHDPLDIGIYQIREANQMIEEFMLAANVSVAEKILKHFPLCSLLRRHPSP
TKEMLEPLLRTASSIGLNLDVSSSKALAESLDNAKSNDPYFNKLIRILATRCMTQAVYFC
SGDLTFSEYYHYGLAASLYTHFTSPIRRYAGLFPILRCSDA

Transcript Sequence

Transcript ID

Zm00001d027487_T029
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:6319360:6328739:-1 gene:Zm00001d027487 gene_biotype:protein_coding transcript_biotype:protein_coding description:Exosome complex exonuclease RRP44 homolog A
Sequence

CTCGAACCAAATTATTAGCCCCGTTGTCGCCGCCGGCTGCTACACACACTTCTCCGCGTT
CCTCGCCGCCGCCGGAGCAATCCCGCGGCGCACTGTCTAACTCACCACCATGCTGCAGAG
CAAGTCATTCGTGAAGAAGACGAAGCAAGGCCGCATCCAAAAGGTCGTCAGGGAGCACTA
CCTCCGCGACGACATCTACTGCGGCTTCGTCCCCTGCACCGCCTGCGCCGCAGCCGCGGA
GCGAAAGCTTGGCGCCGCTGCCGCCGCCATCCTCGTCGTCGACACCAACGTCGTGCTCCA
CCAGATCGATTTGCTGGAGAACCCGGCGATTGAGGATGTCGTCCTGCTGTCAGTGGTGCT
GGACGAGGTGAAGAATAAGAACCTTTCAGTTTTCAACAGGATCAAGGCACTGTGTATCAA
CAAAGCACGTAGATTCTATGTTTTCGCCAACGAGCAGCATAGTTTCAGCATGATTGTATT
TCTTTTTGAGGAAAGGGGAGTGCAACCGAGTACGGGGAAACTTACAAAGACCAGAATCGG
TGTCTTAGGCAGAATGTGCCTAGCAACTGAAACAGCTATCCTATTCAGAACGCGGATCTC
TGAACAAGAATGAGTTTCAGCATGATTGTATTGATGAAATGTCTTTATCCAATCACCATG
ACCGCACAATTACTTATCAAATAGTTTCATGGGAAGAATTAATAGCTTTGGTAGATGCCC
ATGTTCTGAGAAGGCTACAGCTTCCTAATGCAAAATTGTTAATGTGTGTATCATTACTTG
CAAGCTTACACTCTTCTTGACATTGCATCTTTCAAAGGGATATAGAAATGGATTAGCTGC
ATGAAAAAAGGCAATAGAACTCCTAATTCTACAGAACTAGGTCAATCGCAGCAATCTATG
TTGGCCTGCAAAAATATTCTCTGCCGTCTAGAATGCAAGTGCCTATGAATGGGAAATTTT
GAAATCTAATTGCTTCAGCTTCTAGTTGTGTAGTCCTGTAAATCGTGTAAGCTTTTTATA
TCAATACTTGTGTCTTGATGGCAGCCTTCTCTTTCATTTGCCATTATATGTTCACCTTTT
ACTCAAAAAACAGGGATACTTACGTCAAAGACATGGTTGGGGAGAGCTCTAATGATCGTA
ATGACAGAGCAATTCGTGTTGCTGCACGTTGGTACCAAAGTCATCTTGGTGAGAGCGTGA
AGGTTCTACTGATCACAAATGACAGAGATAACAAAAGGAAAGCGATTGAAGAAGGCCTTA
ACGCTGAGACAGTTGAGTCATATGTAAGATCGCTTGCACAGCCTGGTTTGCTTGATTTGG
TTGTTGTTCCAACTAGCGGAGATGTTTCTATGGAAGATGTAGACGATCATAGACCATCAA
AGAAGAAAGTAATCTACAATGAGCACAAACCTATGTCAGAAATTACATCTGGTTTGCGGT
GTGGAATCTACCATCAAGGGAAGCTTCGAGTTAATCGTTACAATCCGTTTGAAGCTTATG
TTGGAAGCGAGAGCATTGGTGATGAGATTGTTATCCGTGGCCGCTCAAATATGAACAGGG
CCTTTGATGGTGATATAGTTGCTGTTGAGCTCTTGCCACAAGATCAATGGCACGAGTCAA
AGTCTTTTATAGCAGATGATGATGAAGAAGAAGAAGAAGATGTTCATTTAGTCCCTAATA
GTGCTGATGATGCTCCTCGGAACACTAATTCCACACAATCAACAGTTGGATCATCAGCTC
CTTCCATTTCTAGTCGTCCAGTTGGGCGTGTTATGGGTATAATCAAGCGAAATTGGAATT
CGTACTGTGGATCCTTGCAGCCGATGCCCATGCCTGCTGGTAGTGGGGGTGTCGCTCATG
CTTTATTTGTTTCAAAAGATCGAAGAGTTCCTAAGATTCGAATTCAAACCAGGCAGCTTG
AGAATCTTGTGAACAAAAGAATTGTTGTCGCGGTTGATTCATGGGATGTTTTGTCTCGAT
ATCCATCAGGACACTATGTACGAACCATTGGAGATATTGGTGACAAAGAAACTGAAACAG
AGGTTGTCTTAATAGAGAATGATATCAACACCAGGCCTTTCTCTACACAAGTCCTTGCTT
GTTTGCCACCTTTACCTTGGACATTATCACCAGAAGATCTGGCTAATCCTAATAGACAAG
ACTTACGCCAAGTGAGAGTCTTTAGTGTGGATCCACCAGGTTGTCGAGACATTGATGATG
CACTACATTGCACACTACTTCCAAATGGGAACTTTGAAGTTGGAGTTCATATCGCTGATG
TCACTAATTTTGTTCACCCTGGTACCCCTCTTGATGAGGAAGCTGCGCAAAGGGGCACTT
CTGTTTATCTTGTTGGGCAGCGGATTGATATGCTTCCAAAGCCCCTGACTGAAGATGTTT
GTTCACTTCGTGCTGATGTTGAACGGTTGGCATTCTCTGTCATTTGGGAAATGACTCCGG
ATGCTGATGTTATATCAACGAGATATACAAAGAGTGTTATCAAATCTTGTGCTGCAATGT
CTTATGTTGAAGCCCAGGCAAGAATGGATGACAGCCGCTTAGTTGATCCACTAACTGTAG
ACTTGCGGAACTTAAATTCATTGGCAAAGATCATGCGACAACGCCGTTGTGAAAGAGGGG
CTTTGACTCTTGCTTCTGCAGAAGTAAAATTTGAGATTGATAGTGAAACTCATGATCCTC
TTGACATAGGAATTTATCAAATCCGTGAGGCAAATCAAATGATTGAAGAATTTATGTTGG
CTGCAAATGTTTCTGTTGCTGAGAAGATTTTGAAGCATTTCCCCTTATGTTCATTGCTAA
GGCGCCATCCTAGCCCAACAAAAGAGATGCTTGAGCCATTACTCCGTACTGCCTCTTCGA
TTGGCCTAAATCTGGACGTGTCATCCTCAAAGGCATTAGCTGAATCACTTGACAACGCAA
AGAGCAATGACCCATACTTCAACAAGCTTATTAGAATTTTGGCGACTAGATGCATGACAC
AGGCTGTTTATTTCTGCAGTGGAGATTTGACCTTTTCTGAATATTACCATTATGGGCTTG
CTGCTTCTCTTTACACTCATTTCACTTCTCCCATTCGCAGATATGCAGGTTTGTTTCCCA
TCCTTAGATGCTCTGATGCATGAAAATAAGAAATTAAGAACTTTGATGGGTTGAATGTAA
CTGGGAACCTGAAGCCATCAAGGCTTATACTTGGCTATTTTCTTCACCTGGCTTTTCTAG
CTAATTAGCCTTTTAGGATGGTTGTGGATCTGAACCTAATGTAACCTTTCTTTTTGTTTC
CTGCACATAGCACGAGTGAAACATTTTAAAAAAGTTTACTCTAATTTTCTTCCTATTAGC
TGGGTGAGATGCCTTGTCTGGATTCTGCACTACAAATACTAATGAATATATTGATAGAAA
ATAGCAACTTGGTGAAATTTATGTATCATAACATCGTTCTTTGTTGCTATTGGTGTATGC
CCGGATAGTAGGAATCGATAATGCATACCAGTAAGCTTACTTTATATTTCTAAGTGGCAA
GGGACATATTAGCTTTTGTCTTGTAGTTGATTGCATGAATAGCCTGCTATTTTAAGCCCG
CTTTTTTGTTATTGCAGATGTTGTTGTTCATAGATTGCTAGCTGCAGCTCTGAATATTGC
AAAGCTCCCACCAATCTTTCAGGATGGTCCACAACTTACAGGCATTGCTGACAACCTGAA
TTACAGGCACAGAAATGCCCAGATGGCAAGCAGAGCATCAGTTGAACTCCACACCCACAT
ATATTTCAAGACAAGGCCAACTGACACTGAAGCTAGGATAGTAAAGATCAAGGCAAATGG
TTTCATAGTATTTGTCCCAAAGTTTGGCATAGAAGGGCCCATCTACCTTACTCCGAAGGG
CGACAAAGGCGGTGATTGGGTTGTTGACGAGGTGCACCAGAGAGTAACCAAGCCCGGAAC
AAACATCAGCTATGCTATCCTCCAGACTGTCAGGATTCATATGGAGGTTGTTGAACCTCA
GCCTCATCGCCCAAAGCTGCAACTCACCCTGATATGAAAAATGTACAGCTGAATTGTAGC
AACATTGTAGTGTTTTCCCGGGCCTCTCACACCTCCAGCTCACTCTTTAGTTCAACATTG
GTGTGATTTTCGATTTGTAAAACTAATCAGTAATCACCACATGGTCAAGATTTTGTAG