Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d027415_T006
CDS Infomation	cds chromosome:B73_RefGen_v4:1:4832999:4838351:1 gene:Zm00001d027415 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy1a description:Serine/threonine-protein kinase ATG1a
Sequence	ATGATGTACCTGGTGCTGGAGTACTGCGACGGAGGCGACCTGGACGCGTTTCTCCACAAG CACGGCCGGCTGCCGGAGGCCGTAGCCAAGGACTTGATGCGGCAGCTCGCGGAAGGGCTG AAGGTGCTGAGGGGGAGGAACATCGTGCACCGGGACCTCAAACCACAGAACCTTCTCCTA TCAACCAACGGGGATGACATCGTATTGAAAATTGGTGACTTTGGGTTTGCCAGGTCGCTG GTGCATGAAAATTTAGCTGCTACAATATGTGGGTCGCCATATTATATGGCACCAGAAATT TGGCAAGGGAAGGACTATGATGCAAAGTCGGACTTGTGGAGTGTTGGTATCATTCTTTTT CAGCTAGTCACAGGGAAGTTGCCATTCACCGGGAGTAATGCTTTTCAGCTGCACCAAAAT GTCATGGCTACCGATGATCTTAACTTCCCTTCAGAAATTGAAGCTGATTTATGTCCTGAT TGCATTGATTTGTGCAGAAGACTCCTGCACCGTGATCCAAAGAAGAGAATAAGTTTTGAA GAAATCTTCAATCACAAGTTTTTGGCAACAACAAGGAAATGCTATGAATCCTGTCATGCT GTAGAATTAAGAGATAACTGCCAGACAATCACCTCTCCTGTTGTCCTAAAAACAAAGTCT GGAAGTATTGAATCAAAAAATCCGAAAGTTTTTGATTCATGGGAGTGGATTGAACGAGAA TATGTGCTTGTTCCGGAAAACTGTACTTCTATGGAAATGTCTTCACTCAACATCAAGTCC ACAAAGGATGATATGGATACAAGAACGGTCAGCTATGGTAGGTCCACTGGCAAAGGGTCT GTTCAGAACCAAATCAGAGACTTTACTGACACAGCTACTGGTGTACAAAGCCATGGATGT GCTCCTGTGGTCATTTCACAGGAGTCAGCCACTGTGGATTGTAGACGAGGGAAACCACCT GATTATATTACAAGACTTCATTCTCTGAATCAATATGTTCTTGTTCTTGCGGATCTTGCT CGGGAAAAGCTATCTAAAGGCCTGTACCTGGAGGCGTTATCAATTGAACTTGTATTATTA ACTATCTGGAAAGAGGCACTTGATGCATGTAGCTTGCTCATGGATACATCAGATGGTGAA AAATTCTCTAAATCTTGTCAAGAACATTTCCTTGCTAAGAGTGGCCACTCACCTATGAAT GTAGTACAAGGATTGGATTTCACTCGGACGGCTTCTATTTTTTCTTGGCTTGAAAGTGGG TTTATGAAGGCATATGATCGTGCAGAGAAGATATCACATGTATTACGGAAAAGTGATGAT AACACCGAGATGCCAGATGCAGTGGATGTTACATTCCAAACTGCTTTGTAA

Peptide Sequence

PEP ID	Zm00001d027415_P006
PEP Infomation	pep chromosome:B73_RefGen_v4:1:4832999:4838351:1 gene:Zm00001d027415 transcript:Zm00001d027415_T006 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy1a description:Serine/threonine-protein kinase ATG1a
Sequence	MMYLVLEYCDGGDLDAFLHKHGRLPEAVAKDLMRQLAEGLKVLRGRNIVHRDLKPQNLLL STNGDDIVLKIGDFGFARSLVHENLAATICGSPYYMAPEIWQGKDYDAKSDLWSVGIILF QLVTGKLPFTGSNAFQLHQNVMATDDLNFPSEIEADLCPDCIDLCRRLLHRDPKKRISFE EIFNHKFLATTRKCYESCHAVELRDNCQTITSPVVLKTKSGSIESKNPKVFDSWEWIERE YVLVPENCTSMEMSSLNIKSTKDDMDTRTVSYGRSTGKGSVQNQIRDFTDTATGVQSHGC APVVISQESATVDCRRGKPPDYITRLHSLNQYVLVLADLAREKLSKGLYLEALSIELVLL TIWKEALDACSLLMDTSDGEKFSKSCQEHFLAKSGHSPMNVVQGLDFTRTASIFSWLESG FMKAYDRAEKISHVLRKSDDNTEMPDAVDVTFQTAL

Transcript Sequence

Transcript ID	Zm00001d027415_T006
Transcript Infomation	cdna chromosome:B73_RefGen_v4:1:4832999:4838351:1 gene:Zm00001d027415 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy1a description:Serine/threonine-protein kinase ATG1a
Sequence	GCCGCCGCGGCGCGCAGACGACTGCGACTCCGCGATGGACGAGGAGGAAAGGGAGGAGGT GGGAGAGTACAAGGCGCGTCCACGACGGCATCCTGCAGGAGAGGGAGATACTCAGGAGCA TCGACCACCCCAACATCCTCCGCCTCCTCGACACCATCGACACCACGAACATGATGTACC TGGTGCTGGAGTACTGCGACGGAGGCGACCTGGACGCGTTTCTCCACAAGCACGGCCGGC TGCCGGAGGCCGTAGCCAAGGACTTGATGCGGCAGCTCGCGGAAGGGCTGAAGGTGCTGA GGGGGAGGAACATCGTGCACCGGGACCTCAAACCACAGAACCTTCTCCTATCAACCAACG GGGATGACATCGTATTGAAAATTGGTGACTTTGGGTTTGCCAGGTCGCTGGTGCATGAAA ATTTAGCTGCTACAATATGTGGGTCGCCATATTATATGGCACCAGAAATTTGGCAAGGGA AGGACTATGATGCAAAGTCGGACTTGTGGAGTGTTGGTATCATTCTTTTTCAGCTAGTCA CAGGGAAGTTGCCATTCACCGGGAGTAATGCTTTTCAGCTGCACCAAAATGTCATGGCTA CCGATGATCTTAACTTCCCTTCAGAAATTGAAGCTGATTTATGTCCTGATTGCATTGATT TGTGCAGAAGACTCCTGCACCGTGATCCAAAGAAGAGAATAAGTTTTGAAGAAATCTTCA ATCACAAGTTTTTGGCAACAACAAGGAAATGCTATGAATCCTGTCATGCTGTAGAATTAA GAGATAACTGCCAGACAATCACCTCTCCTGTTGTCCTAAAAACAAAGTCTGGAAGTATTG AATCAAAAAATCCGAAAGTTTTTGATTCATGGGAGTGGATTGAACGAGAATATGTGCTTG TTCCGGAAAACTGTACTTCTATGGAAATGTCTTCACTCAACATCAAGTCCACAAAGGATG ATATGGATACAAGAACGGTCAGCTATGGTAGGTCCACTGGCAAAGGGTCTGTTCAGAACC AAATCAGAGACTTTACTGACACAGCTACTGGTGTACAAAGCCATGGATGTGCTCCTGTGG TCATTTCACAGGAGTCAGCCACTGTGGATTGTAGACGAGGGAAACCACCTGATTATATTA CAAGACTTCATTCTCTGAATCAATATGTTCTTGTTCTTGCGGATCTTGCTCGGGAAAAGC TATCTAAAGGCCTGTACCTGGAGGCGTTATCAATTGAACTTGTATTATTAACTATCTGGA AAGAGGCACTTGATGCATGTAGCTTGCTCATGGATACATCAGATGGTGAAAAATTCTCTA AATCTTGTCAAGAACATTTCCTTGCTAAGAGTGGCCACTCACCTATGAATGTAGTACAAG GATTGGATTTCACTCGGACGGCTTCTATTTTTTCTTGGCTTGAAAGTGGGTTTATGAAGG CATATGATCGTGCAGAGAAGATATCACATGTATTACGGAAAAGTGATGATAACACCGAGA TGCCAGATGCAGTGGATGTTACATTCCAAACTGCTTTGTAATATGAGAAGAGTAGAGCTG CGAATGAAGTTTTAGGAAATCAAAGCAGATCCGCAGAGCTATATTCGAAGTCTATCATCT TGCTCACGTTTTTAGTACAGGAAGCATCTATGTTGCCACTAAATCCACCGCTTTCCCTTT CGCCTTTGGATCAGCAACGCATCCGTAGGTACATAGCTAATTTGAACAGCCATCTCTGCA GTGCTCAGGTTCCAGGGCAACGGCAGAGATCAGTCCACCATGTTGCTTTTTGTCTAGGAG GTGGTGTTCAATGCTTTGGTGTCATGAACCTTTGTAAAATTGTAGTTGCCGAACACCATG ATCCTGCCCCCTTTTTTGTATATATATAGATAATAACACCACATGCTCTATATGGTCGCC CCTTACCATATGTTCAAATGACTCTGAACTTTATATATTTGCAAGTGCCTTGTTTGCACA T