Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d027340_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:1:3272244:3288218:1 gene:Zm00001d027340 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein kinase superfamily protein
Sequence

ATGGTGAGGAGCGGGAGCATACGGCGGTCCGCGGTGCCCGCGCCTATGCCGGCGCCGGCG
TTTACCGTGTCTCCCGCCGACTACAGGCTGCTGGAGGAAGTGGGATACGGCGCCAACGCC
GTCGTATACCGCGCGGAGTTCATTCCCACCGGCCGGACGGTCGCTGTGAAGTGTCTGGAT
CTCGATCGGGTCAACAGTAACCTCGATGATGTAAGAAAGGAGACTCAAACTATGAGCTTG
ATAGATCACCCTAATGTCATCAGGTCTTACTGCTCATTTGTTGTGGGTCATAATCTTTGG
GTGGTAATGCCATTCATGTCAGAGGGTTCATGCTTGCACCTAATGAAGGTTGCATATCCC
GATGGTTTTGAGGAGCCAATTATTGCCTCTATTCTAAAGGAAACACTCAAAGCTCTAGAC
TACCTCCATAGGCAAGGACATATTCATCGTGATGTGAAGGCAGGTAATATCCTTATTGAT
AATCCTGGTGTAGTCAAGCTCGGGGACTTTGGTGTCTCTGCTTGCATGTTTGATAGAGGC
GATAGACAAAGGGCTAGGAATACATTTGTTGGAACACCATGCTGGATGGCACCAGAAGTT
CTCCAGCCTGGAACTGGATATAATTTCAAAGCTGATATATGGTCGTTTGGAATAACTGCA
CTAGAGCTGGCACATGGACATGCTCCCTTTTCGAAGTACCCTCCCATGAAGGTTCTTCTC
ATGACGCTCCAAAATGCTCCTCCAGGTCTTGACTATGACCGTGATAAAAGATTTTCAAAG
TCCTTCAAGGAAATGGTTGCGATGTGCTTGGTGAAAGATCAAACGAAGAGGCCAACAGCT
GAAAAATTACTTAAGCATTCTTTTTTCAAGAATGCAAAACCTCCGGAGCTAACTGTTAAG
AACATTTTAACTGATTTGCCCCCTCTTTGGGACCGTGTAAAGGCACTCCAGCTAAAGGAT
GCAGCACAACTAGCTTTGAAGAGAATGCCTTCTTCAGAACAAGAAGCACTTTCTATGAGT
GAGTACCAACGAGGTGTCAGTGCATGGAACTTCGATATTGAGGATCTAAAGGCTCAGGCA
TCACTGATATGTGATGATGATCCACCTGAAATAAAAGAAGACGATGACACTGGTAGAATA
ACTGACATTGATAAGGATACATCTTCTGACGATTATTTTGGAAAGACAGCACCATCGAAT
GGAAATAACTGCAGTGATCGTTCTTCTGTGCCAGCAAATCCTGGTCAAAATGGTCCCGAA
ATAAATGAAATATTGTCTTCCAACAATGGGAATGCCTACAGTGAAAGGAAGCCTGATGGA
CGTAAAAACCCAGAATCAGAAAATGATTCATTGCCCTCGACGTCGAAGCATGATGCTGAT
GGGAAAGATTATAGATGTGATTTCAGGCAAAAACAGAGGACATACTCAGGTCCAGTTCTG
CAATCTGGTCCGAATAATAGTTCGATGACTGAAAGGGGCCACATTATTGAAAGGGATGCA
GGAGTTCAATCTGTATCTGATAAACAAAAGAATGGTACAAGAAGAGCCAATAATCTTAGT
GGTCCTTTGTCACTTCCAACTCGTGCTTCTGCAAATAGTCTTTCAAGAGCCAATAATCTT
AGTGGCCCTCTGTCACTTCCAACTCGTGCTTCTGCAAATAGTCTTTCTGCTCCTATTCGA
TCTTCTGCAGGTTATGTAGGCTCTTTGGGTGATAAACCTAAGCGCACTATGGTGGAAATT
AAAGGCCGCTTCTCAGTGACATCTGAGAATGTGGATCTTGCAAAGGTTCAAGAAATTCCA
GGGAGCAGTGCCTCACGTAAATTGCAAGAGGGGCCTTCACTGAGAAAATCAGCCAGTGTT
GGTGATTGGTCAGCGAATGATAAGACAACGTCTACTAATCATCAAAGGAAGGAACTCTGC
AATAGCTCTGTATCTACATCAATTCTGATTCCGCATCTTCAAAACCTTGTGAAGCAAACT
GCATTCCAGCAAGATCTGATTACGAACCTACTAAGTAGCTTGCAACAAAATGAGAGAGTC
GATGCTCAGTCAAGAGTCCAGAGCACGACGAGTGATACAGTGGTTGAAGCTGCTACTGCT
GAGAGAGAACACTCGTTACTTGTTAAAATTTTTGAGTTACAATCTAGGATGATTTCTTTG
ACTGACGAATTAATTGCGGCAAAGCTGAAACATGTTCAGCTGCAAGAAGAGCTAAATGTA
CTCTACTGCCAAGAAGAAATCCTGGATATGAGAGAGGACGAGAGCGAAGAAGCATGA

Peptide Sequence

PEP ID

Zm00001d027340_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:1:3272244:3288218:1 gene:Zm00001d027340 transcript:Zm00001d027340_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein kinase superfamily protein
Sequence

MVRSGSIRRSAVPAPMPAPAFTVSPADYRLLEEVGYGANAVVYRAEFIPTGRTVAVKCLD
LDRVNSNLDDVRKETQTMSLIDHPNVIRSYCSFVVGHNLWVVMPFMSEGSCLHLMKVAYP
DGFEEPIIASILKETLKALDYLHRQGHIHRDVKAGNILIDNPGVVKLGDFGVSACMFDRG
DRQRARNTFVGTPCWMAPEVLQPGTGYNFKADIWSFGITALELAHGHAPFSKYPPMKVLL
MTLQNAPPGLDYDRDKRFSKSFKEMVAMCLVKDQTKRPTAEKLLKHSFFKNAKPPELTVK
NILTDLPPLWDRVKALQLKDAAQLALKRMPSSEQEALSMSEYQRGVSAWNFDIEDLKAQA
SLICDDDPPEIKEDDDTGRITDIDKDTSSDDYFGKTAPSNGNNCSDRSSVPANPGQNGPE
INEILSSNNGNAYSERKPDGRKNPESENDSLPSTSKHDADGKDYRCDFRQKQRTYSGPVL
QSGPNNSSMTERGHIIERDAGVQSVSDKQKNGTRRANNLSGPLSLPTRASANSLSRANNL
SGPLSLPTRASANSLSAPIRSSAGYVGSLGDKPKRTMVEIKGRFSVTSENVDLAKVQEIP
GSSASRKLQEGPSLRKSASVGDWSANDKTTSTNHQRKELCNSSVSTSILIPHLQNLVKQT
AFQQDLITNLLSSLQQNERVDAQSRVQSTTSDTVVEAATAEREHSLLVKIFELQSRMISL
TDELIAAKLKHVQLQEELNVLYCQEEILDMREDESEEA

Transcript Sequence

Transcript ID

Zm00001d027340_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:1:3272244:3288218:1 gene:Zm00001d027340 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein kinase superfamily protein
Sequence

CTCTCAATCTCCCCCGTCTCCCCCCTCCCTCTCCCTTGCTTCCCTCTCCAGTCCCCAGCG
CGCGCGACACGACACGGGCCAATCACCCAGCCGCCGCCGCCGGCGATCGCCGGAACTCGG
CGCCGGTGCTTCCGAGCACGCTCCGCTCGGAACCATGGTGAGGAGCGGGAGCATACGGCG
GTCCGCGGTGCCCGCGCCTATGCCGGCGCCGGCGTTTACCGTGTCTCCCGCCGACTACAG
GCTGCTGGAGGAAGTGGGATACGGCGCCAACGCCGTCGTATACCGCGCGGAGTTCATTCC
CACCGGCCGGACGGTCGCTGTGAAGTGTCTGGATCTCGATCGGGTCAACAGTAACCTCGA
TGATGTAAGAAAGGAGACTCAAACTATGAGCTTGATAGATCACCCTAATGTCATCAGGTC
TTACTGCTCATTTGTTGTGGGTCATAATCTTTGGGTGGTAATGCCATTCATGTCAGAGGG
TTCATGCTTGCACCTAATGAAGGTTGCATATCCCGATGGTTTTGAGGAGCCAATTATTGC
CTCTATTCTAAAGGAAACACTCAAAGCTCTAGACTACCTCCATAGGCAAGGACATATTCA
TCGTGATGTGAAGGCAGGTAATATCCTTATTGATAATCCTGGTGTAGTCAAGCTCGGGGA
CTTTGGTGTCTCTGCTTGCATGTTTGATAGAGGCGATAGACAAAGGGCTAGGAATACATT
TGTTGGAACACCATGCTGGATGGCACCAGAAGTTCTCCAGCCTGGAACTGGATATAATTT
CAAAGCTGATATATGGTCGTTTGGAATAACTGCACTAGAGCTGGCACATGGACATGCTCC
CTTTTCGAAGTACCCTCCCATGAAGGTTCTTCTCATGACGCTCCAAAATGCTCCTCCAGG
TCTTGACTATGACCGTGATAAAAGATTTTCAAAGTCCTTCAAGGAAATGGTTGCGATGTG
CTTGGTGAAAGATCAAACGAAGAGGCCAACAGCTGAAAAATTACTTAAGCATTCTTTTTT
CAAGAATGCAAAACCTCCGGAGCTAACTGTTAAGAACATTTTAACTGATTTGCCCCCTCT
TTGGGACCGTGTAAAGGCACTCCAGCTAAAGGATGCAGCACAACTAGCTTTGAAGAGAAT
GCCTTCTTCAGAACAAGAAGCACTTTCTATGAGTGAGTACCAACGAGGTGTCAGTGCATG
GAACTTCGATATTGAGGATCTAAAGGCTCAGGCATCACTGATATGTGATGATGATCCACC
TGAAATAAAAGAAGACGATGACACTGGTAGAATAACTGACATTGATAAGGATACATCTTC
TGACGATTATTTTGGAAAGACAGCACCATCGAATGGAAATAACTGCAGTGATCGTTCTTC
TGTGCCAGCAAATCCTGGTCAAAATGGTCCCGAAATAAATGAAATATTGTCTTCCAACAA
TGGGAATGCCTACAGTGAAAGGAAGCCTGATGGACGTAAAAACCCAGAATCAGAAAATGA
TTCATTGCCCTCGACGTCGAAGCATGATGCTGATGGGAAAGATTATAGATGTGATTTCAG
GCAAAAACAGAGGACATACTCAGGTCCAGTTCTGCAATCTGGTCCGAATAATAGTTCGAT
GACTGAAAGGGGCCACATTATTGAAAGGGATGCAGGAGTTCAATCTGTATCTGATAAACA
AAAGAATGGTACAAGAAGAGCCAATAATCTTAGTGGTCCTTTGTCACTTCCAACTCGTGC
TTCTGCAAATAGTCTTTCAAGAGCCAATAATCTTAGTGGCCCTCTGTCACTTCCAACTCG
TGCTTCTGCAAATAGTCTTTCTGCTCCTATTCGATCTTCTGCAGGTTATGTAGGCTCTTT
GGGTGATAAACCTAAGCGCACTATGGTGGAAATTAAAGGCCGCTTCTCAGTGACATCTGA
GAATGTGGATCTTGCAAAGGTTCAAGAAATTCCAGGGAGCAGTGCCTCACGTAAATTGCA
AGAGGGGCCTTCACTGAGAAAATCAGCCAGTGTTGGTGATTGGTCAGCGAATGATAAGAC
AACGTCTACTAATCATCAAAGGAAGGAACTCTGCAATAGCTCTGTATCTACATCAATTCT
GATTCCGCATCTTCAAAACCTTGTGAAGCAAACTGCATTCCAGCAAGATCTGATTACGAA
CCTACTAAGTAGCTTGCAACAAAATGAGAGAGTCGATGCTCAGTCAAGAGTCCAGAGCAC
GACGAGTGATACAGTGGTTGAAGCTGCTACTGCTGAGAGAGAACACTCGTTACTTGTTAA
AATTTTTGAGTTACAATCTAGGATGATTTCTTTGACTGACGAATTAATTGCGGCAAAGCT
GAAACATGTTCAGCTGCAAGAAGAGCTAAATGTACTCTACTGCCAAGAAGAAATCCTGGA
TATGAGAGAGGACGAGAGCGAAGAAGCATGATGCGGTGGAGCCTGCCCCCCTTTTTTTAC
TACTACTACTGAGGGGGACTAAAAGCCACATGCTCTAAGCCCGTGCAATTGAGGCTTGGC
TAACTGGCTGCATACAATACAAGGACTCGAAGGATCATTGGCCAACTCCGGGTGCAATCG
AAGAACCTGCAATGAGTTTGATGGAGCGGGGTTTATGATCGTTGGCCTCGGATTTGAACT
GTTATGTATATTCAGTCGACCCGTTCGATTTCTGACTCGGGTTTGGTTTGTTCAGTGAGC
TTTTAAGGCGTCTTGCGATGCGCATCTACTTGATCATTAAGATGGCTATGACGCCAGCCT
CTAATATATACTACTAGTGGTAGTAATAGGTATAGCGTCCGTATAGTACCATTGTACTTG
TACCTCAGAAGTCAGCAAGACTGCGACAATAATTGCATCGCGTCTGTAGACAGCGGAATG
CATGAGTAGCTAC