Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d026698_T052
CDS Infomation

cds chromosome:B73_RefGen_v4:10:150315004:150318967:-1 gene:Zm00001d026698 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHD-transcription factor 8 description:Increased DNA methylation 1
Sequence

ATGGCCGCCGGGAGAGGCCACGCGGAGGACATGCTGGGCTTCAAGGAGGACGACGCCATG
CGCTTCATCTTCGGCGAAGACATCATGGGAATGGAGGACCACGGCGCCTTCGACAGATCC
CTCATGGAGCTTCAGGTTTTCAAGGAGGTCTTCTGCGGGGCCGCCCATAACGTCGCCGCC
ACCACCCATCTGCCCACCGAGATGGACCTTGGATTCGTCCACACCAGCGCCGCCGCTGCC
CACCTCAAGGCCACGGAGACCTCGCCCTCTCCATTTGTCTCCCATGCGCAGCAGCAGCAG
CCTGCTGCCGCTGCCACTGCTGATCCACAGCTCACAATGGATCGTAGCCAGCCAAACTAT
GGACCTCGCCACGACCTTCACCCCCAGGTTCAGGAGCACGCGCACACTCGTGCGCAGCAA
AACGGGACCGAGCTGGATGATGCTGCGTTCATGCACAGATTCATGGGTTCCTGGCAGCCT
GGGGATAAGCACGCGATCCATCTGCTCGGCCTATCCGATGACCAACACCCATTCGTCGGC
GCAGATTTGGATGTGCACGCGCAAGATATTGGAGCTGGGATGTGCAATGCTCCCGGGCTG
GGCTGCAGCAGCAGCACTAGCGCGGTTGATGACCCCATGCCTTCCTTCATAGAAGCGCTA
GCGGAGATTTCTGAATTCCAGAGTGCCACTCTCCTTCCAGATCCCTTTTTGCATCAGTGG
TTCCAGGAGCAGCAGCAATTCCCTACCAATGCATGCTTCTCTTACGATCAAGGCCAGATG
GATGACACCACTTATCCCCTATGTGCAAGTACAAAGGATTTCCCTGACAGAGAGCAGCAT
CTGTGTTACAGTGAAGAAGCTCATAGTACTCCAACAATACCTCATCAGTCCCATATTTGG
TTCAGCCCTGGTCAGTTCACCCAGCTCGATGGCACCACCATTTGCCAGGAAGGCACGCCT
GATGCGAATATTAGTTGCCCGGATGAAATTGATGTTCATGGATGCGGCAGCAGCGCGGTA
CACTTTGGCTCGGCAGCTGCTGTTTCCAAGAAGGCCTTGGGCAGGGATATTCCTGACCAG
CTGGAAGCACATGCGCATCGCCTTTTCAAGGACGCTGGATGGACTATTAAGCCACGGAAA
AGGAATGACAGGGCTAAGATGGCGTCCTACTTCACAGCTCCAAACAAGGAAGCGGTTCAT
ACCTCACTAACCCAGGCTTGGAAGTTTTGTGGCAAAAAGTTATATGAAGCTTCCCCAGAT
ACAGAAAGGGGAAGGTATCCAAAGGAGTGGTCAGATGTTGATTCGTTTTGGAAGGATCTC
ACAGATGCAATGACCTATGTTGATAGGATGCTTGCAAACCAGCAAAATGCACTCACGCTT
CTCCAACGTTGGCAGATTTTGGATCCTTTTGTAGCTGTTGTGTTCATCAGTAGGAAAATC
ACTGCTCTGCAGCAATATAAAACTCTTAGAGCTGTCGACAGTTCAACCTTTGTTCTTGAT
GGCAGCTCAGACACATCATCGGTAAGTAAGATCATGCACAAAGCCAGTGAGCTTTTGACA
AGCCGAATGATCCGGTTGACTCCACTGATCACAGACTCTGATTGCAGCACACTTGCAACT
GAGAGCTACAACGGGCATCAATCTTTACAGAGCTGTCATGATGTAGAAGACAACAACTAT
AGGGATACGGACCCAAAGCTTTCCTGCAATGAGAGTCTGAATTACAATGCAAGTGACGAG
ACAAAACATCACATCGATGCAAGTAATGATGGAAGACAAACTTATGCTCAACCAAAAACT
CTTAATAGCTCTGTAAAAATGTCAAGCAAGAAACCGAAAAGAATATTTGATATTAGTGCA
GATGGACTGGACGAGACCAATGTAGCAACTATGGACATGGCTGACCCAGGAGACACTAAT
GCCTTTGAGGAACACATTATGTATTCAGGTGTTAGCACACTAAAAGACGATATGAAAGCT
GAAACAAAATCAGAAAAGCTAGATAAAGATGATCAAAGCAGCAAGTGTGACATGCTCCTC
TCTTCAGTGGTCAAGCAACTTAAGGATTACAGTACATTCTCAGATACCCATTGTACTACA
AGGGAGTCACAGTCAGATGCCACAACATTCTGCCATGATGACAAGGTCTGGAAAAAGATA
GTCCCATCCCATGGAGAATTTTATGAGGATTCACAGAGTGAGCCAACAGGAAATACTGCA
CCTGTTGAATTATCCCATGATGTTCTGGGAACTTATCTAATCTGTGACTCACAAATCTGC
GAGAGAGGCACTGCCAAAATGAAAACGAAGGATTGGTTGAAGTACATGAAGAAAAGACCT
CGCGAGTTGCGGATCAATGATGAGGACCTTTTGATGACAGCTATAGTGAAAAACAAGGAC
CTTGGCACCTGTCACAAATTTGCTTCAGGTTCTTCAGCCGCAAAGAAGTTTAAGAAGCTG
AAGAGCCACAAGAAAGGTAACAAGCTACTTTCTAAAATTGGGAAAGCTGGCACAAACCTA
TTGGGTGGAAAGAGAGTAAGTTTGGCCCGTAAAACTGTAATCTGCTGGTTGCTTGCGACT
GGCTTTCTGAGCGTAAAAGATGTGATACAGTACCGGGATCCAAAAAGTAATAAAATTATA
AAGGATGGGATGGTTACCTGGGAAGGTATTGTTTGCAATTGCTGCAAAAAAAACTTATCC
GTATCTGATTTCATGGCTCATGCTGGTCGTAGTCACCCACAGTCCTCATTGGGCCTCTTT
CTAGAGTCTGGCAAGTCATACACTTTGTGCCTGGTTGAGGCTTGGTCTGCTGAATCTATG
AGCAGGAGAAGCAATGCATGGGGTAGAAAAGTTGAGGCAATAGATGAAAGTGATGACACC
TGTGGTTTCTGTGGAGATGGTGGTGAATTACTTTGCTGTGACAATTGCCCATCGACATAT
CATCAAGCTTGCTTGTCTGCTAAGGAGCTTCCAGAAGGTAGTTGGTACTGCCATAATTGC
ACTTGTCAGGTTTGTGGGGGGCCATTTAGTGAAAAGGAGGTTTCAACATTCTCGGCGATT
TTCAAATGTTTCCAATGCGGAGATGCATGTAAAATCTTATCTCCTCTCCACTTTGTCCTG
TCATTTGTGTTAGACTCTTGTTAG

Peptide Sequence

PEP ID

Zm00001d026698_P052
PEP Infomation

pep chromosome:B73_RefGen_v4:10:150315004:150318967:-1 gene:Zm00001d026698 transcript:Zm00001d026698_T052 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHD-transcription factor 8 description:Increased DNA methylation 1
Sequence

MAAGRGHAEDMLGFKEDDAMRFIFGEDIMGMEDHGAFDRSLMELQVFKEVFCGAAHNVAA
TTHLPTEMDLGFVHTSAAAAHLKATETSPSPFVSHAQQQQPAAAATADPQLTMDRSQPNY
GPRHDLHPQVQEHAHTRAQQNGTELDDAAFMHRFMGSWQPGDKHAIHLLGLSDDQHPFVG
ADLDVHAQDIGAGMCNAPGLGCSSSTSAVDDPMPSFIEALAEISEFQSATLLPDPFLHQW
FQEQQQFPTNACFSYDQGQMDDTTYPLCASTKDFPDREQHLCYSEEAHSTPTIPHQSHIW
FSPGQFTQLDGTTICQEGTPDANISCPDEIDVHGCGSSAVHFGSAAAVSKKALGRDIPDQ
LEAHAHRLFKDAGWTIKPRKRNDRAKMASYFTAPNKEAVHTSLTQAWKFCGKKLYEASPD
TERGRYPKEWSDVDSFWKDLTDAMTYVDRMLANQQNALTLLQRWQILDPFVAVVFISRKI
TALQQYKTLRAVDSSTFVLDGSSDTSSVSKIMHKASELLTSRMIRLTPLITDSDCSTLAT
ESYNGHQSLQSCHDVEDNNYRDTDPKLSCNESLNYNASDETKHHIDASNDGRQTYAQPKT
LNSSVKMSSKKPKRIFDISADGLDETNVATMDMADPGDTNAFEEHIMYSGVSTLKDDMKA
ETKSEKLDKDDQSSKCDMLLSSVVKQLKDYSTFSDTHCTTRESQSDATTFCHDDKVWKKI
VPSHGEFYEDSQSEPTGNTAPVELSHDVLGTYLICDSQICERGTAKMKTKDWLKYMKKRP
RELRINDEDLLMTAIVKNKDLGTCHKFASGSSAAKKFKKLKSHKKGNKLLSKIGKAGTNL
LGGKRVSLARKTVICWLLATGFLSVKDVIQYRDPKSNKIIKDGMVTWEGIVCNCCKKNLS
VSDFMAHAGRSHPQSSLGLFLESGKSYTLCLVEAWSAESMSRRSNAWGRKVEAIDESDDT
CGFCGDGGELLCCDNCPSTYHQACLSAKELPEGSWYCHNCTCQVCGGPFSEKEVSTFSAI
FKCFQCGDACKILSPLHFVLSFVLDSC

Transcript Sequence

Transcript ID

Zm00001d026698_T052
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:150315004:150318967:-1 gene:Zm00001d026698 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:PHD-transcription factor 8 description:Increased DNA methylation 1
Sequence

GTCTTGTCCAGCTCCACCCTCCACTGCAGCAGCTTGCTTGCCTTTGCTCCACTCCCATAC
AGAGTCCAGACGCCCGCCCCGTCGCCGCCGGCACTCAGCTACCAAGCCGCCGTCCCGGAC
CCTCGATTTTCCTCGCCGGAGCGGAGCGCCCACCCCTCTTCGCTCGCCTCGGATCTCGCC
CCCGATTTGCTCCGCCCGCTCATCCCCAACCACTATTCTCTCGTCTCGATCCAGCGCAGG
CTACTCGAGATTCAGCTGCCGCCGCCCTCTGGATCCGGCCACACAATCCGCTTCCGCTCC
CGCTGCCTCCCCGACCCGACCGCCCATCTCGCTCAGGCTCCCTCCTAGTCCCTACCCTAG
CTGCTAGCTACCACTACCACTACCATGGCCGCCGGGAGAGGCCACGCGGAGGACATGCTG
GGCTTCAAGGAGGACGACGCCATGCGCTTCATCTTCGGCGAAGACATCATGGGAATGGAG
GACCACGGCGCCTTCGACAGATCCCTCATGGAGCTTCAGGTTTTCAAGGAGGTCTTCTGC
GGGGCCGCCCATAACGTCGCCGCCACCACCCATCTGCCCACCGAGATGGACCTTGGATTC
GTCCACACCAGCGCCGCCGCTGCCCACCTCAAGGCCACGGAGACCTCGCCCTCTCCATTT
GTCTCCCATGCGCAGCAGCAGCAGCCTGCTGCCGCTGCCACTGCTGATCCACAGCTCACA
ATGGATCGTAGCCAGCCAAACTATGGACCTCGCCACGACCTTCACCCCCAGGTTCAGGAG
CACGCGCACACTCGTGCGCAGCAAAACGGGACCGAGCTGGATGATGCTGCGTTCATGCAC
AGATTCATGGGTTCCTGGCAGCCTGGGGATAAGCACGCGATCCATCTGCTCGGCCTATCC
GATGACCAACACCCATTCGTCGGCGCAGATTTGGATGTGCACGCGCAAGATATTGGAGCT
GGGATGTGCAATGCTCCCGGGCTGGGCTGCAGCAGCAGCACTAGCGCGGTTGATGACCCC
ATGCCTTCCTTCATAGAAGCGCTAGCGGAGATTTCTGAATTCCAGAGTGCCACTCTCCTT
CCAGATCCCTTTTTGCATCAGTGGTTCCAGGAGCAGCAGCAATTCCCTACCAATGCATGC
TTCTCTTACGATCAAGGCCAGATGGATGACACCACTTATCCCCTATGTGCAAGTACAAAG
GATTTCCCTGACAGAGAGCAGCATCTGTGTTACAGTGAAGAAGCTCATAGTACTCCAACA
ATACCTCATCAGTCCCATATTTGGTTCAGCCCTGGTCAGTTCACCCAGCTCGATGGCACC
ACCATTTGCCAGGAAGGCACGCCTGATGCGAATATTAGTTGCCCGGATGAAATTGATGTT
CATGGATGCGGCAGCAGCGCGGTACACTTTGGCTCGGCAGCTGCTGTTTCCAAGAAGGCC
TTGGGCAGGGATATTCCTGACCAGCTGGAAGCACATGCGCATCGCCTTTTCAAGGACGCT
GGATGGACTATTAAGCCACGGAAAAGGAATGACAGGGCTAAGATGGCGTCCTACTTCACA
GCTCCAAACAAGGAAGCGGTTCATACCTCACTAACCCAGGCTTGGAAGTTTTGTGGCAAA
AAGTTATATGAAGCTTCCCCAGATACAGAAAGGGGAAGGTATCCAAAGGAGTGGTCAGAT
GTTGATTCGTTTTGGAAGGATCTCACAGATGCAATGACCTATGTTGATAGGATGCTTGCA
AACCAGCAAAATGCACTCACGCTTCTCCAACGTTGGCAGATTTTGGATCCTTTTGTAGCT
GTTGTGTTCATCAGTAGGAAAATCACTGCTCTGCAGCAATATAAAACTCTTAGAGCTGTC
GACAGTTCAACCTTTGTTCTTGATGGCAGCTCAGACACATCATCGGTAAGTAAGATCATG
CACAAAGCCAGTGAGCTTTTGACAAGCCGAATGATCCGGTTGACTCCACTGATCACAGAC
TCTGATTGCAGCACACTTGCAACTGAGAGCTACAACGGGCATCAATCTTTACAGAGCTGT
CATGATGTAGAAGACAACAACTATAGGGATACGGACCCAAAGCTTTCCTGCAATGAGAGT
CTGAATTACAATGCAAGTGACGAGACAAAACATCACATCGATGCAAGTAATGATGGAAGA
CAAACTTATGCTCAACCAAAAACTCTTAATAGCTCTGTAAAAATGTCAAGCAAGAAACCG
AAAAGAATATTTGATATTAGTGCAGATGGACTGGACGAGACCAATGTAGCAACTATGGAC
ATGGCTGACCCAGGAGACACTAATGCCTTTGAGGAACACATTATGTATTCAGGTGTTAGC
ACACTAAAAGACGATATGAAAGCTGAAACAAAATCAGAAAAGCTAGATAAAGATGATCAA
AGCAGCAAGTGTGACATGCTCCTCTCTTCAGTGGTCAAGCAACTTAAGGATTACAGTACA
TTCTCAGATACCCATTGTACTACAAGGGAGTCACAGTCAGATGCCACAACATTCTGCCAT
GATGACAAGGTCTGGAAAAAGATAGTCCCATCCCATGGAGAATTTTATGAGGATTCACAG
AGTGAGCCAACAGGAAATACTGCACCTGTTGAATTATCCCATGATGTTCTGGGAACTTAT
CTAATCTGTGACTCACAAATCTGCGAGAGAGGCACTGCCAAAATGAAAACGAAGGATTGG
TTGAAGTACATGAAGAAAAGACCTCGCGAGTTGCGGATCAATGATGAGGACCTTTTGATG
ACAGCTATAGTGAAAAACAAGGACCTTGGCACCTGTCACAAATTTGCTTCAGGTTCTTCA
GCCGCAAAGAAGTTTAAGAAGCTGAAGAGCCACAAGAAAGGTAACAAGCTACTTTCTAAA
ATTGGGAAAGCTGGCACAAACCTATTGGGTGGAAAGAGAGTAAGTTTGGCCCGTAAAACT
GTAATCTGCTGGTTGCTTGCGACTGGCTTTCTGAGCGTAAAAGATGTGATACAGTACCGG
GATCCAAAAAGTAATAAAATTATAAAGGATGGGATGGTTACCTGGGAAGGTATTGTTTGC
AATTGCTGCAAAAAAAACTTATCCGTATCTGATTTCATGGCTCATGCTGGTCGTAGTCAC
CCACAGTCCTCATTGGGCCTCTTTCTAGAGTCTGGCAAGTCATACACTTTGTGCCTGGTT
GAGGCTTGGTCTGCTGAATCTATGAGCAGGAGAAGCAATGCATGGGGTAGAAAAGTTGAG
GCAATAGATGAAAGTGATGACACCTGTGGTTTCTGTGGAGATGGTGGTGAATTACTTTGC
TGTGACAATTGCCCATCGACATATCATCAAGCTTGCTTGTCTGCTAAGGAGCTTCCAGAA
GGTAGTTGGTACTGCCATAATTGCACTTGTCAGGTTTGTGGGGGGCCATTTAGTGAAAAG
GAGGTTTCAACATTCTCGGCGATTTTCAAATGTTTCCAATGCGGAGATGCATGTAAAATC
TTATCTCCTCTCCACTTTGTCCTGTCATTTGTGTTAGACTCTTGTTAGGGTTTCGGGGCT
AGTCCCTGTGTAATTATTTGCATACCCTCAGTGTAATGGGCTTGACCCAATTACTCAGCT
TATATATATGCACTCCCAACCCTAGTTTGGGTTAGGATTTC