Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d026672_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:10:149707696:149709357:1 gene:Zm00001d026672 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

ATGCACAGACATCTCTTCTACCACTGCCATCTCAAAGGCCATGCTGCTATACCAGCGGTA
GCTGCAACGATTCATCTAGTTGTGGCAAATTTTGGCACATCCCCAACACTCGAGAGATCA
AGAAAGCAAAGACATGCCAACCTTCAAAATGCATTGAGAATTTTGGACCTTGTACCATCC
AAGCATCATCATGACCAAGAGGAAGTTCCGTCACATCACCGCCTTATCAATGGCTGTATG
GGTGACATCTCGGCAGTCCAATCAAGACTGCACACTATGCGTAAGGGTAAAGAGAGTTTT
GCTAACTCAAGCTCAAATCAAGCACAGCCTAAACACAGTAACATTGTCTCAAATAATACC
TCAGTTTGCCCCTTCATAACTAGACTCACAAAGGAGGACATGTTTATGCAAATTGTGGAG
TTACATAGGAGTGGACAAATTAGTTCAGATGCATCCATTTTGGTATCTGCACTGAGTTAC
TGTGCTGCTGAGAAAATTGTTACCGCAGGTGTACAGTTCCATGCTCAACTAGTGAAAGTA
GGATATGTCTCATCTATCTCCACTGGCAACTCGCTGATCAGTTTTTATTCACGATGCAGC
CAATTGGAAATCGCTCATCGGGTTTTCCAAAATATGACAGCAAAAAGTACCGTGACATGG
ACAGCATTAATTTCTGGCTATGCCCAGGATAATCAGGTGGAACCGTGTCTCCATTTATTT
GCACTGATGAGGCACTCTGTGTGCAAGCCCAATGACGTCACATTCGCAACTATCTTCAGT
GTCTGCACTAATCATGCATTTCTTGTACTTGGTAAAAGTGTGCAAGCCCTACAGATGAGA
ATGGGTTTTGATTCGTATGTGCATGTGTCCAATGCATTGATATCAATGTATGCAAAGTGC
GGGAGTATTGGTGAAGCACGAGCTGTATTTGAGAGCATTAGATGCAAAGACTTGGTCTCA
TGGAACTCCTTGATCTTTGGATATTCACAGCATGGCCTTGCTGAGCATTGCCTATATTTG
CTAAGAGAAATGGAAGGGCATATAACACCGGATGCAATCTCCTTCCTAGGTGTGCTCTCA
TCATGCCGGCATGCATGCCTTGTGGCAGAGGGCCGACGGTGCTTCAGGGCAATGATTGAA
CATGGAGTAGTACCAGAGATAGATCACTACTCATGTATGGTGGATCTTTTTGGCCGTGCA
GGGCTGCTTGATGAAGCATGGGATCTGATCCAGACGATGCCCATGCCTCCAAATGGTGTT
GTATGGGGCTCCCTTCTAGCTTCCTGTAGGGTGCATGGAAGCACTTGGATCGGCATACAA
GCTGCAGAGCACCGTCTAAAGCTGGAACCAAGTTGTGCTGCAATTCATGTTCAGCTAGCG
AATTTGTATGGGAGCATTGGGTGCTGGGATGATGTGGCAAGAGTGAGGAAGGTGATGAAG
GAGAGAGGGCTGAAAACAAACATCGGGTGCAGTTGGATAGAAGTTGGCAATAAAGTTTAT
ACATTTACAGCAGAAAACAGATCAAAGAACCAGGTAAACAATGTCCTGGTTGTTCTTGAT
TGCTTGCAGTCACATATGGATCACGAGTATGATATACTACTGATCGAGGGTCTGGATTGG
GATTATCCTGAGCATATCAAGTTAAGTTTAAACACTATATAA

Peptide Sequence

PEP ID

Zm00001d026672_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:10:149707696:149709357:1 gene:Zm00001d026672 transcript:Zm00001d026672_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

MHRHLFYHCHLKGHAAIPAVAATIHLVVANFGTSPTLERSRKQRHANLQNALRILDLVPS
KHHHDQEEVPSHHRLINGCMGDISAVQSRLHTMRKGKESFANSSSNQAQPKHSNIVSNNT
SVCPFITRLTKEDMFMQIVELHRSGQISSDASILVSALSYCAAEKIVTAGVQFHAQLVKV
GYVSSISTGNSLISFYSRCSQLEIAHRVFQNMTAKSTVTWTALISGYAQDNQVEPCLHLF
ALMRHSVCKPNDVTFATIFSVCTNHAFLVLGKSVQALQMRMGFDSYVHVSNALISMYAKC
GSIGEARAVFESIRCKDLVSWNSLIFGYSQHGLAEHCLYLLREMEGHITPDAISFLGVLS
SCRHACLVAEGRRCFRAMIEHGVVPEIDHYSCMVDLFGRAGLLDEAWDLIQTMPMPPNGV
VWGSLLASCRVHGSTWIGIQAAEHRLKLEPSCAAIHVQLANLYGSIGCWDDVARVRKVMK
ERGLKTNIGCSWIEVGNKVYTFTAENRSKNQVNNVLVVLDCLQSHMDHEYDILLIEGLDW
DYPEHIKLSLNTI

Transcript Sequence

Transcript ID

Zm00001d026672_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:149707696:149709357:1 gene:Zm00001d026672 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein

Sequence

ATGCACAGACATCTCTTCTACCACTGCCATCTCAAAGGCCATGCTGCTATACCAGCGGTA
GCTGCAACGATTCATCTAGTTGTGGCAAATTTTGGCACATCCCCAACACTCGAGAGATCA
AGAAAGCAAAGACATGCCAACCTTCAAAATGCATTGAGAATTTTGGACCTTGTACCATCC
AAGCATCATCATGACCAAGAGGAAGTTCCGTCACATCACCGCCTTATCAATGGCTGTATG
GGTGACATCTCGGCAGTCCAATCAAGACTGCACACTATGCGTAAGGGTAAAGAGAGTTTT
GCTAACTCAAGCTCAAATCAAGCACAGCCTAAACACAGTAACATTGTCTCAAATAATACC
TCAGTTTGCCCCTTCATAACTAGACTCACAAAGGAGGACATGTTTATGCAAATTGTGGAG
TTACATAGGAGTGGACAAATTAGTTCAGATGCATCCATTTTGGTATCTGCACTGAGTTAC
TGTGCTGCTGAGAAAATTGTTACCGCAGGTGTACAGTTCCATGCTCAACTAGTGAAAGTA
GGATATGTCTCATCTATCTCCACTGGCAACTCGCTGATCAGTTTTTATTCACGATGCAGC
CAATTGGAAATCGCTCATCGGGTTTTCCAAAATATGACAGCAAAAAGTACCGTGACATGG
ACAGCATTAATTTCTGGCTATGCCCAGGATAATCAGGTGGAACCGTGTCTCCATTTATTT
GCACTGATGAGGCACTCTGTGTGCAAGCCCAATGACGTCACATTCGCAACTATCTTCAGT
GTCTGCACTAATCATGCATTTCTTGTACTTGGTAAAAGTGTGCAAGCCCTACAGATGAGA
ATGGGTTTTGATTCGTATGTGCATGTGTCCAATGCATTGATATCAATGTATGCAAAGTGC
GGGAGTATTGGTGAAGCACGAGCTGTATTTGAGAGCATTAGATGCAAAGACTTGGTCTCA
TGGAACTCCTTGATCTTTGGATATTCACAGCATGGCCTTGCTGAGCATTGCCTATATTTG
CTAAGAGAAATGGAAGGGCATATAACACCGGATGCAATCTCCTTCCTAGGTGTGCTCTCA
TCATGCCGGCATGCATGCCTTGTGGCAGAGGGCCGACGGTGCTTCAGGGCAATGATTGAA
CATGGAGTAGTACCAGAGATAGATCACTACTCATGTATGGTGGATCTTTTTGGCCGTGCA
GGGCTGCTTGATGAAGCATGGGATCTGATCCAGACGATGCCCATGCCTCCAAATGGTGTT
GTATGGGGCTCCCTTCTAGCTTCCTGTAGGGTGCATGGAAGCACTTGGATCGGCATACAA
GCTGCAGAGCACCGTCTAAAGCTGGAACCAAGTTGTGCTGCAATTCATGTTCAGCTAGCG
AATTTGTATGGGAGCATTGGGTGCTGGGATGATGTGGCAAGAGTGAGGAAGGTGATGAAG
GAGAGAGGGCTGAAAACAAACATCGGGTGCAGTTGGATAGAAGTTGGCAATAAAGTTTAT
ACATTTACAGCAGAAAACAGATCAAAGAACCAGGTAAACAATGTCCTGGTTGTTCTTGAT
TGCTTGCAGTCACATATGGATCACGAGTATGATATACTACTGATCGAGGGTCTGGATTGG
GATTATCCTGAGCATATCAAGTTAAGTTTAAACACTATATAA