Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d026654_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:10:149493855:149501735:1 gene:Zm00001d026654 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence	ATGCAATTCCTCTCGCTCCCCACCGCCTCCTCGCCTACCCCGAGGCCCTTCAAGCCCGTG GCCTCCTCGGCCTCCTTCCGCCGCCCATCTCCGCCGCCGCCTCCTCCGGCCCCCAAACCC TCGCCTCCACCCCGGCCGCCTACTCTTCCCGCAAATCCACTAGCCTCCAAGCTATGGCTG ACGAGCAAGCTGTCCCCACCGCCCCCTCCGCCTGCGCCGCTCCAGACTGCGGAGGAGCCT TCGCCCCCGCCTCCGACGCCCCCGACGGAGCCGGAGCAGGAGGCGCCGCCGCTGCGGCAG GAGGACTTCCGGCAGAAGGGCAAGGTGTTCGTGGGGAACCTGCCGCTGTGGGCGAGGAAG CCTGAGATCGCGGAGTTCTTCCGCCAGTTCGGGCCCCTGGAGAAGGTGGAGCTCGTGCGG GGCCACGACGACCCCGAGCGCAACGTCGGCTTCTGCTTTCTCTACTACGGGGGCGACGAC CCGGAGGCCGCGGCGGGCCGGGCTGTGGAGGTGGACGGGGTGGAGTTCCGGGGGAAGTTG CTCACCGTGAGGCTCGACGACGGGAGGAAAGGGAGAGCCAGGGCGGAGGAGCGGGCGCGC TGGGTCGAAGCCGGGGTTGTCCGGGAGGCTAGCTCCCCGTGGCACAAGGGCAGGGAGGAC GCGTGCCGCGAGTTCCGGAGAGTGCTGGAGTCGCGGCCCGAGGACTGGCAGGCTGTCGTC TCCGCTTTCGAGCGGATTCCCAAGCCATCAAGGAGGGAATTTGGTCTGATGGTTGTGTAT TATGCCAAGCGAGGTGATAAGCATCACGCTCGTGCAACATTTGAGAACATGAGAGCAAGG GGAATAGAACCCAATGCGTTTGTCTTCACAAGCCTTGTTCACGCTTATGCAGTTGCTGGA GATATGCGTGGGGCACTGTCATGCGTTGAGGAAATGAAATCTGAAGGCATCGAAATGACA GTTGTTACTTATAGTATCCTTATTTCAGGATATGGCAAAACTAATGATGCTCAGCAACAG ATCACATGGCCTTTTCATTTTAGTCTTTCTAACATCATTTCTTGTTCTGGAAGATCTGCA GACAACTTGTTCAAAGAGGCTAAGACCAAGCTTGACAACCTAAATGGAATCATATATAGC AACATTATACATGCTCACTGCCAATCTGGGAATATGGATCGAGCTGAAGAGCTGGTTCGT GAAATGGAAGAGGATGGTATTGATGCTCCTATCGATGTTTATCACAGTATGATGCATGGA TATACTGTCGTCCAAGATGAAAAGAAATGTCTAATTGTGTTTGAAAGGTTGAAGGAGTGT GGCTTCAAGCCAACTATAATATCTTATGGTTGCCTTATTAATCTGTATGTTAAGGTTGGG AAGGTTCCCAAAGCCATAGCTATTAGCAAAGAAATGGAATCACATGGCATCAAACATAAT AACAAAACTTACTCTATGCTGATCAATGGATTTATCCATTTGCATGACTTTGCAAATGCT TTTAGCATTTTCGAGGACATGATAAAATCAGGTTTGCAGCCTGATCGTGCCATATACAAT TTGCTGGTAGAAGCATTTTGTAAGATGGGAAATATGGATCGAGCTATTCGCATATTCGAA AGAATGCAGAAGGAACGAATGCAACCATCAAATAGAACATTCAGACCTATCATAGAAGGA TTTGCAGTTGCTGGAGATATGAAAAGGGCTTTCGATACCCTTGACCTAATGCGGCGAAGC GGTTGTGCTCCTACTGTAATGACTTACAATGCTCTCATTCATGGGCTAGTTAGAAAGCAC CAGGTTGAAAAGGCCGTTTCTGTACTTGACAAGATGTCTATTGCTGGCATTGCACCAAAT GAGCATACATACACGATCATTATGAGAGGTTATGCTGCTAGTGGAGATATTGGGAAGGCT TTTGAGTATTTCACCAAAATCAAAGAGAGTGGCCTAAAGCTTGATGTGTACATTTACGAA ACATTGTTGAGAGCATGTTGCAAATCAGGAAGAATGCAAAGTGCCTTAGCAGTTACACGA GAGATGAGCTTTCAGAAGATACCGAGGAATACATTTATATATAATATTTTGATTGATGGT TGGGCTCGGAGAGGAGATGTCTGGGAGGCAGCAGATTTGTTGAAACAAATGAAAGAGGAT GGAATCCCTCCTAACATCCATACATTTACTTCCTACATAAATGCATGCTGCAAAGCGGGA GACATGCAGAGAGCGGAAAATGTGATTCAAGAAATGGCAGATGTTGGATTGAAACCAAAT GTCAAGACGTTTACCACGTTGATTAAAGGTTGGGCTAGAGTGTCACTGCCAGATAGAGCG TTGAAATGCTTTGAGGAGATGAAATCAGCTGGGCTTAAGCCTGATGAAGCTGCTTATCAT TGCTTGGTGACCTCACTTCTCTCAAGGGCAACTGTGATGGAGGGAAGCACCTACACCGGA ATCTTCAGTGTCTGTAGGGAAATGTTTGAGAATGATTTGACAGTTGACCTGCGCACTGCT GTTCACTGGTCAAAATGGCTTCACAAGATCGAGAGGACAGGAGGTGCACTAACAGAAGCA CTTCAGCGAATATTTCCACCTGATTGGAATTCGTCAGAAAATTTGGAGGCTTCGAATTCT GCAAGTGATGGAGATTCTGAGTCTTGCAGTGACGCAGAGTTTAGTGATAATGATGAGGAT CACGACGTTGATGACTTGTGA

Peptide Sequence

PEP ID	Zm00001d026654_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:10:149493855:149501735:1 gene:Zm00001d026654 transcript:Zm00001d026654_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence	MQFLSLPTASSPTPRPFKPVASSASFRRPSPPPPPPAPKPSPPPRPPTLPANPLASKLWL TSKLSPPPPPPAPLQTAEEPSPPPPTPPTEPEQEAPPLRQEDFRQKGKVFVGNLPLWARK PEIAEFFRQFGPLEKVELVRGHDDPERNVGFCFLYYGGDDPEAAAGRAVEVDGVEFRGKL LTVRLDDGRKGRARAEERARWVEAGVVREASSPWHKGREDACREFRRVLESRPEDWQAVV SAFERIPKPSRREFGLMVVYYAKRGDKHHARATFENMRARGIEPNAFVFTSLVHAYAVAG DMRGALSCVEEMKSEGIEMTVVTYSILISGYGKTNDAQQQITWPFHFSLSNIISCSGRSA DNLFKEAKTKLDNLNGIIYSNIIHAHCQSGNMDRAEELVREMEEDGIDAPIDVYHSMMHG YTVVQDEKKCLIVFERLKECGFKPTIISYGCLINLYVKVGKVPKAIAISKEMESHGIKHN NKTYSMLINGFIHLHDFANAFSIFEDMIKSGLQPDRAIYNLLVEAFCKMGNMDRAIRIFE RMQKERMQPSNRTFRPIIEGFAVAGDMKRAFDTLDLMRRSGCAPTVMTYNALIHGLVRKH QVEKAVSVLDKMSIAGIAPNEHTYTIIMRGYAASGDIGKAFEYFTKIKESGLKLDVYIYE TLLRACCKSGRMQSALAVTREMSFQKIPRNTFIYNILIDGWARRGDVWEAADLLKQMKED GIPPNIHTFTSYINACCKAGDMQRAENVIQEMADVGLKPNVKTFTTLIKGWARVSLPDRA LKCFEEMKSAGLKPDEAAYHCLVTSLLSRATVMEGSTYTGIFSVCREMFENDLTVDLRTA VHWSKWLHKIERTGGALTEALQRIFPPDWNSSENLEASNSASDGDSESCSDAEFSDNDED HDVDDL

Transcript Sequence

Transcript ID	Zm00001d026654_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:10:149493855:149501735:1 gene:Zm00001d026654 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence	GGCTTATCCTCCATGTCCAGCCTTGGCCGAGGAGGAAGCAGGCGCAGCGCAGGTGGGCAT CGTCTTTCCCGGGCCATTCGAAAATCTGACACCACCACCCTCTGATGCAATTCCTCTCGC TCCCCACCGCCTCCTCGCCTACCCCGAGGCCCTTCAAGCCCGTGGCCTCCTCGGCCTCCT TCCGCCGCCCATCTCCGCCGCCGCCTCCTCCGGCCCCCAAACCCTCGCCTCCACCCCGGC CGCCTACTCTTCCCGCAAATCCACTAGCCTCCAAGCTATGGCTGACGAGCAAGCTGTCCC CACCGCCCCCTCCGCCTGCGCCGCTCCAGACTGCGGAGGAGCCTTCGCCCCCGCCTCCGA CGCCCCCGACGGAGCCGGAGCAGGAGGCGCCGCCGCTGCGGCAGGAGGACTTCCGGCAGA AGGGCAAGGTGTTCGTGGGGAACCTGCCGCTGTGGGCGAGGAAGCCTGAGATCGCGGAGT TCTTCCGCCAGTTCGGGCCCCTGGAGAAGGTGGAGCTCGTGCGGGGCCACGACGACCCCG AGCGCAACGTCGGCTTCTGCTTTCTCTACTACGGGGGCGACGACCCGGAGGCCGCGGCGG GCCGGGCTGTGGAGGTGGACGGGGTGGAGTTCCGGGGGAAGTTGCTCACCGTGAGGCTCG ACGACGGGAGGAAAGGGAGAGCCAGGGCGGAGGAGCGGGCGCGCTGGGTCGAAGCCGGGG TTGTCCGGGAGGCTAGCTCCCCGTGGCACAAGGGCAGGGAGGACGCGTGCCGCGAGTTCC GGAGAGTGCTGGAGTCGCGGCCCGAGGACTGGCAGGCTGTCGTCTCCGCTTTCGAGCGGA TTCCCAAGCCATCAAGGAGGGAATTTGGTCTGATGGTTGTGTATTATGCCAAGCGAGGTG ATAAGCATCACGCTCGTGCAACATTTGAGAACATGAGAGCAAGGGGAATAGAACCCAATG CGTTTGTCTTCACAAGCCTTGTTCACGCTTATGCAGTTGCTGGAGATATGCGTGGGGCAC TGTCATGCGTTGAGGAAATGAAATCTGAAGGCATCGAAATGACAGTTGTTACTTATAGTA TCCTTATTTCAGGATATGGCAAAACTAATGATGCTCAGCAACAGATCACATGGCCTTTTC ATTTTAGTCTTTCTAACATCATTTCTTGTTCTGGAAGATCTGCAGACAACTTGTTCAAAG AGGCTAAGACCAAGCTTGACAACCTAAATGGAATCATATATAGCAACATTATACATGCTC ACTGCCAATCTGGGAATATGGATCGAGCTGAAGAGCTGGTTCGTGAAATGGAAGAGGATG GTATTGATGCTCCTATCGATGTTTATCACAGTATGATGCATGGATATACTGTCGTCCAAG ATGAAAAGAAATGTCTAATTGTGTTTGAAAGGTTGAAGGAGTGTGGCTTCAAGCCAACTA TAATATCTTATGGTTGCCTTATTAATCTGTATGTTAAGGTTGGGAAGGTTCCCAAAGCCA TAGCTATTAGCAAAGAAATGGAATCACATGGCATCAAACATAATAACAAAACTTACTCTA TGCTGATCAATGGATTTATCCATTTGCATGACTTTGCAAATGCTTTTAGCATTTTCGAGG ACATGATAAAATCAGGTTTGCAGCCTGATCGTGCCATATACAATTTGCTGGTAGAAGCAT TTTGTAAGATGGGAAATATGGATCGAGCTATTCGCATATTCGAAAGAATGCAGAAGGAAC GAATGCAACCATCAAATAGAACATTCAGACCTATCATAGAAGGATTTGCAGTTGCTGGAG ATATGAAAAGGGCTTTCGATACCCTTGACCTAATGCGGCGAAGCGGTTGTGCTCCTACTG TAATGACTTACAATGCTCTCATTCATGGGCTAGTTAGAAAGCACCAGGTTGAAAAGGCCG TTTCTGTACTTGACAAGATGTCTATTGCTGGCATTGCACCAAATGAGCATACATACACGA TCATTATGAGAGGTTATGCTGCTAGTGGAGATATTGGGAAGGCTTTTGAGTATTTCACCA AAATCAAAGAGAGTGGCCTAAAGCTTGATGTGTACATTTACGAAACATTGTTGAGAGCAT GTTGCAAATCAGGAAGAATGCAAAGTGCCTTAGCAGTTACACGAGAGATGAGCTTTCAGA AGATACCGAGGAATACATTTATATATAATATTTTGATTGATGGTTGGGCTCGGAGAGGAG ATGTCTGGGAGGCAGCAGATTTGTTGAAACAAATGAAAGAGGATGGAATCCCTCCTAACA TCCATACATTTACTTCCTACATAAATGCATGCTGCAAAGCGGGAGACATGCAGAGAGCGG AAAATGTGATTCAAGAAATGGCAGATGTTGGATTGAAACCAAATGTCAAGACGTTTACCA CGTTGATTAAAGGTTGGGCTAGAGTGTCACTGCCAGATAGAGCGTTGAAATGCTTTGAGG AGATGAAATCAGCTGGGCTTAAGCCTGATGAAGCTGCTTATCATTGCTTGGTGACCTCAC TTCTCTCAAGGGCAACTGTGATGGAGGGAAGCACCTACACCGGAATCTTCAGTGTCTGTA GGGAAATGTTTGAGAATGATTTGACAGTTGACCTGCGCACTGCTGTTCACTGGTCAAAAT GGCTTCACAAGATCGAGAGGACAGGAGGTGCACTAACAGAAGCACTTCAGCGAATATTTC CACCTGATTGGAATTCGTCAGAAAATTTGGAGGCTTCGAATTCTGCAAGTGATGGAGATT CTGAGTCTTGCAGTGACGCAGAGTTTAGTGATAATGATGAGGATCACGACGTTGATGACT TGTGACATAATATCAAGACAGTTTTAACCTTTCTCCAATTCCTCACTACTGCTTCAATGA CAGTTAAACTATCAAGGCTACTTGCTTGTGGCCTGCCAAGAGGAAGGTTTGGAATCTTAT TGTGATTTTAAGCGTGAGCCGTCTGCCCTCTGTGGTGTTTTAAGAGTCACGGACTGTCAG TAACAGTACTGCTGGGGCTGAAGACAAAGGCTGTCAATGCAACAGACGAACTTCCAGTTA TATCTGTTGTTGTACAGATCAGTGACTCGTAGTACAGGAGTTTGGATTGGTCCCTTCTGC TTTATTGCAGTCTGAACCGATTGAATGGGGAAATTTCCTATTTGAAACTGAAGTACAACT TCAATCAAATGATACATGATGGCTGTTCTTTCATCTAAGGTTTGACATCTTACAGCAGCT TCAACCAAGTGAACCTTAACTTACCACATCTCGTTTGAGTGAGCTTGGAATTGCTGGCCC CTGTCCAAGCTGAGCTTTTACTATCGGGGACATGCCTGCTTGCACAATACGGCATTATTA TATTTATTAAAGCTGGTGTGTATTTTTGCGTTTGTGTCGTGTGTGATATATGAACTTCGA ATCTTAGCTGTCTGGTATCTTTAGTTGAATCACAAGATACATATGGTTTCCGTCAAGGTA AATTTTTTTTTACGGTCACGAGCCGTAACGTAAATGACACTTGAGTGCTAAGTGCTAACA GTAGTAAGTTTGAATAGGTCAGACTTTGTCATTTGTTACCTGTCACGTTACAAATATGTA AATTAAACAAAAAGTTGCATGTATGAATAGCCTGGACTATTCTATATAAGTCTGGTCGAG CTACTCTTTTGAAGGGTCTCGGTCCTTCGTTACCCCGAGGCCGAACATGAACTATCGTCT ATCGGCCCC