Gene sequences

How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only)

Other Tools

Data List

All

Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d026641_T004
CDS Infomation	cds chromosome:B73_RefGen_v4:10:149273846:149277740:-1 gene:Zm00001d026641 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy4b description:Cysteine protease ATG4a
Sequence	ATGACGACCTCGCCTGAGAGGGGAGAAGCACCACCTGCGCCGCCACGCGATTCACCGTGC GAGGACGCCGCCCCAGCTGCCGCCGTCGTTGCCTCTTCCTCCTCTGGCTCCGAGCGCGAG GAAGACGGCGGCTCCAGGCAGCCCAAGGCATCTGTCCTGTCCGGCGTCTTCGCGCCCCCT CTCGCCATATTCGAGGGGCAGCAGCAGGTCTCCTCGACGCCGTGCGACGCCAGCTCGACA AAGCCGCCCTCGGGGTCCTATGCTTGGTCCAGGATTCTGAGGAGGTTCGTGGGCAGCGGC TCCATGTGGCGTCTTCTGGGCTGCGCCAGGGTCCTGACCTCCGGTGACGTGTGGTTCCTT GGTAAATGCTACAGGGTGTCGCCCGAGGAAGAGGAGTCTGGCGGCTCGGATTCTGACAGC GGCCATGCTGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAGGG TTTGATGCAATACCTGGTTCCAAGCTCACTAGTGATGTGAACTGGGGATGCATGGTTAGA AGTAGTCAGATGCTGGTTGCTCAGGCACTGATTTTTCACCATCTTGGAAGATCTTGGAGA AAGCCATCAGAGAAGCCATACGACCCAGATTATATACGGGTCTTACACCTATTTGGTGAC TCTGAAGCTTGTGCTTTCTCTATTCACAATTTACTTCAAGCTGGAAGGAATTATGGTCTG GCTGCTGGATCATGGGTGGGTCCATATGCTATGTGCCGGGCATGGCAGACCCTTATCCGC ACAAATAGAGAGCAAGCTGATGCTGTCGATGGGAAGGAAAATTTCCCTATGGCGCTATAT GTCGTTTCGGGTGATGAAGATGGTGAAAGAGGTGGAGCTCCAGTTTTTTGTATTGATGTT GCTGCTCAGCTTTGCTCCAATTTCAATAAAGGACAATGTACATGGTCACCTATTCTTTTG TTGATTCCTCTGGTTCTTGGCCTTGACAAAATTAATCCAAGGTACATCCCATTACTAAAG GAGACGTTTAAGTTCCCACAAAGCTTGGGCATTTTAGGTGGAAAACCTGGGACGTCAACA TACATTGCTGGGGTACAAGAAGATAGGGCTCTCTACCTAGATCCCCATGACGTTCAGATG GCGGTTGATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCACTGCAGTGTT GTCCGAGATTTGGCTCTAGAACAAATAGACCCATCCCTAGCCATTGGTTTTTACTGTCGC GACAAAGGTGAGCCGTTGTAG

Peptide Sequence

PEP ID	Zm00001d026641_P004
PEP Infomation	pep chromosome:B73_RefGen_v4:10:149273846:149277740:-1 gene:Zm00001d026641 transcript:Zm00001d026641_T004 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy4b description:Cysteine protease ATG4a
Sequence	MTTSPERGEAPPAPPRDSPCEDAAPAAAVVASSSSGSEREEDGGSRQPKASVLSGVFAPP LAIFEGQQQVSSTPCDASSTKPPSGSYAWSRILRRFVGSGSMWRLLGCARVLTSGDVWFL GKCYRVSPEEEESGGSDSDSGHAAFLEDFSSRIWITYRKGFDAIPGSKLTSDVNWGCMVR SSQMLVAQALIFHHLGRSWRKPSEKPYDPDYIRVLHLFGDSEACAFSIHNLLQAGRNYGL AAGSWVGPYAMCRAWQTLIRTNREQADAVDGKENFPMALYVVSGDEDGERGGAPVFCIDV AAQLCSNFNKGQCTWSPILLLIPLVLGLDKINPRYIPLLKETFKFPQSLGILGGKPGTST YIAGVQEDRALYLDPHDVQMAVDIAPDNLEADTSSYHCSVVRDLALEQIDPSLAIGFYCR DKGEPL

Transcript Sequence

Transcript ID	Zm00001d026641_T004
Transcript Infomation	cdna chromosome:B73_RefGen_v4:10:149273846:149277740:-1 gene:Zm00001d026641 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:autophagy4b description:Cysteine protease ATG4a
Sequence	CCCCCTCTTCTTTTCTTCGGCTCTTCCGCCGCCTCCACGCGGCCTACGCCACCTCCCCCT CACCTCCCGCCGTGCGCCCCGATCCCTCGCCGCGACCTCATCTCGCCGAGGACTGGATCG CCGGAGGGACATCGTGGGTGGGTGGGTGTGTCCTTCGCACCCATGCGGCGTTAGCTGATG ACGACCTCGCCTGAGAGGGGAGAAGCACCACCTGCGCCGCCACGCGATTCACCGTGCGAG GACGCCGCCCCAGCTGCCGCCGTCGTTGCCTCTTCCTCCTCTGGCTCCGAGCGCGAGGAA GACGGCGGCTCCAGGCAGCCCAAGGCATCTGTCCTGTCCGGCGTCTTCGCGCCCCCTCTC GCCATATTCGAGGGGCAGCAGCAGGTCTCCTCGACGCCGTGCGACGCCAGCTCGACAAAG CCGCCCTCGGGGTCCTATGCTTGGTCCAGGATTCTGAGGAGGTTCGTGGGCAGCGGCTCC ATGTGGCGTCTTCTGGGCTGCGCCAGGGTCCTGACCTCCGGTGACGTGTGGTTCCTTGGT AAATGCTACAGGGTGTCGCCCGAGGAAGAGGAGTCTGGCGGCTCGGATTCTGACAGCGGC CATGCTGCGTTTCTGGAAGATTTCTCTTCCAGGATATGGATCACTTACCGGAAAGGGTTT GATGCAATACCTGGTTCCAAGCTCACTAGTGATGTGAACTGGGGATGCATGGTTAGAAGT AGTCAGATGCTGGTTGCTCAGGCACTGATTTTTCACCATCTTGGAAGATCTTGGAGAAAG CCATCAGAGAAGCCATACGACCCAGATTATATACGGGTCTTACACCTATTTGGTGACTCT GAAGCTTGTGCTTTCTCTATTCACAATTTACTTCAAGCTGGAAGGAATTATGGTCTGGCT GCTGGATCATGGGTGGGTCCATATGCTATGTGCCGGGCATGGCAGACCCTTATCCGCACA AATAGAGAGCAAGCTGATGCTGTCGATGGGAAGGAAAATTTCCCTATGGCGCTATATGTC GTTTCGGGTGATGAAGATGGTGAAAGAGGTGGAGCTCCAGTTTTTTGTATTGATGTTGCT GCTCAGCTTTGCTCCAATTTCAATAAAGGACAATGTACATGGTCACCTATTCTTTTGTTG ATTCCTCTGGTTCTTGGCCTTGACAAAATTAATCCAAGGTACATCCCATTACTAAAGGAG ACGTTTAAGTTCCCACAAAGCTTGGGCATTTTAGGTGGAAAACCTGGGACGTCAACATAC ATTGCTGGGGTACAAGAAGATAGGGCTCTCTACCTAGATCCCCATGACGTTCAGATGGCG GTTGATATTGCACCGGATAACTTGGAGGCGGACACTTCCTCGTACCACTGCAGTGTTGTC CGAGATTTGGCTCTAGAACAAATAGACCCATCCCTAGCCATTGGTTTTTACTGTCGCGAC AAAGGTGAGCCGTTGTAGTTTCTCAGATGCCATCCAGTTGGTTTTTTCAAGCTCTAATCC CTATGTTTCCTATTTGCATCTTTTTACGCAGACGATTTCGATGATTTCTGTTCTCGGGCA TCTGAGTTGGCAGAGAAAGCCAATGGAGCGCCACTCTTTACTGTCATGCAGTCAGTCCAG CCATCGAAGCAAATGTATAAACAGGATGATGGGCTGTGCTGTTGTTCTGGCAGTAGCATG GCCAACGAGGACTACGACCTTGACGCCTCTGGCGAGGCAGGAGAAGAGTGGCAGATCCTC TAAACCAGGGGAACACCGATGACATGTTGGGTTGAAAAACTCATGGAACATGTTGCCTGA ATGCCCTCGTTTGCGTGTGAATACAGGGGATGATTTGTTGTCTCTGAGTGGAAATGTTCA AAACATACACTTGTGAATGATCATAGATAAATGTATTTAACATTCCATTT