Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d026439_T092
CDS Infomation

cds chromosome:B73_RefGen_v4:10:145891757:145896583:1 gene:Zm00001d026439 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide repeat (TPR)-like superfamily protein
Sequence

ATGAAGAGTTATGGGGATTTATCTGTCTTCTATTATCGCCTTCAACACATTGAAATGGCT
CTAAAGTATGTCAACCGTGCACTATATCTGCTTCAGTTCTCGTGTGGGCTTTCACACCCG
AATTCAGCTGCCACCTACATAAATGTGGCTATGATGGAAGAAGGCATGGGAAATGTTCAT
GTTGCTCTTCGATACTTGCATGAAGCCCTGAAGTGCAACAAGAGGTTGCTAGGAGCTGAT
CACATCCAGACTGCTGCAAGCTACCATGCCATAGCCATAGCCCTTTCAATGATGGACGCG
TACTCCCTAAGCGTGCAACATGAACAAACAACCTTGCAGATACTTCAGGAGAAACTAGGG
CAAGATGACCTCCGAACTCAGGATGCTGCTGCATGGCTAGAATATTTTGAGTCAAAAGCA
TTAGAACAACAAGAGGCGGCTCGAAGAGGCATGCCAAAACCTGATTCATCTATTGCAAGT
AAAGGACATCTTAGTGTATCAGATCTTCTTGACTTCATAAGCCCAGACCAGGAAAGAAAA
GAAAGGGATATGCAAAGGAAATGCAGGCGTGCAAAGAATAATATCAGAGCTCATCATGGT
GAATCAGTTGAAGAGAAGGAGAATTTTCAGCTTGTTTCAGGATCTCCTCTTGAAGCAAGC
AAAGACAGTTTTCAAGAAGAAAAACTGGATGTGCATCCTCCTGCTGTATTAGAAGAAAAT
TATGCTGCCCATGATGAGCATAAGCAATGTGATGTTTTATCACCAGAAGAATATTCTGAT
GAAGGGTGGCAAGCAGCTAGTATGAGAGGAAGATCTGCAAATGTAAGGAAGAAAAGCAGT
CGCAGGAAACCGGCTCTTATGAAATTAATGGTTGATCATTTTGAAGGTAGTCATACAGGT
TCTGTGTATAGGACTGGTTTACAACCTCAAACAAAAGGAGACAAAGAAGATTCTGTAAGT
GCTCCTAGCCAGCTTTCATTTGGAAGTTTTTTGAAAACCGACAAGTTGAATGGGGATTCC
AGCATTGCTGAAGATAAGACGTGCAATGGTAGCGCTAACCAAGAACAACGGACAAAGCTA
ACAGGAATTAACAGGCCAACCAGTATCGCTTCCAAATTCATATCATACAAAGATGTGGCT
GTTTCGCCCCCTGGCACAGTATTGAAACCCATTTTGGAGAAGAAGGAAGCAAAGGAGAAA
GATAGTGGACGTGATATTGACCTAGCACTGTCATCCGAGGAAGAAGATAAAAAGTTTACA
GAAAAAGAGAAAGAAAAGCCAAGTGAGGACAGTAGCAAAGAGATTCTTTCAATTCAGCGA
GATTTAGAGAGTCATGCAGAAATACCTCCTGACAGCAACAGTGATGAAGGCCCATCTGCA
GCTAGTAAAGCGTCTGGAAGCAAACTGTCAGCTTCAGCTCCTCCATTCAATCCAGGATCA
GTGTTATCAATGTCCCAGCCATACAGCACGGTGGCAGTATATGATGCCAGTGCTATCCTT
CAGGCAATACCAAGTCAAGCAATGGAGATTCTCCCTTCTGCCATTGACACTAGAGTGCCT
CGTGGTCCTCGGTCCACCTTGTACTATCGTACTGGGCATTCCTTCCAAAGGAAACAAGGT
TACACGCACAGCCAGAGCACTATTGTAAGGGGTAGCTACTCCCCCACAACCATGAATCCA
CATGCTGCTGAATTTGTGCCTGGAAAAACTTCGCAACAATCTGATGTGGCTGACAGAGAA
CCCAGTCCTGCTAATCCTGTGGCCAATTCTGATCTGGATGTTGTATCGCAGACCACAGAT
GAAGCGAGGGCCGAAACGCCTGCCACAGAAAAGGCAGGTCAGGTTGAGAAAGTCGTTTCA
GGTAAAGGAAAGGAAAACAGGGGGAAAGACATCGTGAGAAACTCATACAAAACAGAACTT
GCAAGGCAAATTTTACTCAGTTTCATTGTGAAGTCGGTGCACGACAGTTTAGGTCCCTCC
CGGGCTGAACCAGAGAGGAAGCCAAGTGGATCAGATGAAGCTAGTAATGAACAGACCAGC
GTCTTAGGCAAGAACGCTTCTGGTTCTGGTCGCAAAGATCCAGATAAACAAGAGAAAGCG
ACGGAGGTTACTAAGGGCCTGAAGGATACAGAGGGATTCACTGTCGTTTCAAAACGCCGA
AGGCGTCCCCAGCCGTTCATGAACCCCATAAATGGCCTATATTCTCAGCCGTCTATTTGC
ACCTCTGTCAGTTAA

Peptide Sequence

PEP ID

Zm00001d026439_P092
PEP Infomation

pep chromosome:B73_RefGen_v4:10:145891757:145896583:1 gene:Zm00001d026439 transcript:Zm00001d026439_T092 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide repeat (TPR)-like superfamily protein
Sequence

MKSYGDLSVFYYRLQHIEMALKYVNRALYLLQFSCGLSHPNSAATYINVAMMEEGMGNVH
VALRYLHEALKCNKRLLGADHIQTAASYHAIAIALSMMDAYSLSVQHEQTTLQILQEKLG
QDDLRTQDAAAWLEYFESKALEQQEAARRGMPKPDSSIASKGHLSVSDLLDFISPDQERK
ERDMQRKCRRAKNNIRAHHGESVEEKENFQLVSGSPLEASKDSFQEEKLDVHPPAVLEEN
YAAHDEHKQCDVLSPEEYSDEGWQAASMRGRSANVRKKSSRRKPALMKLMVDHFEGSHTG
SVYRTGLQPQTKGDKEDSVSAPSQLSFGSFLKTDKLNGDSSIAEDKTCNGSANQEQRTKL
TGINRPTSIASKFISYKDVAVSPPGTVLKPILEKKEAKEKDSGRDIDLALSSEEEDKKFT
EKEKEKPSEDSSKEILSIQRDLESHAEIPPDSNSDEGPSAASKASGSKLSASAPPFNPGS
VLSMSQPYSTVAVYDASAILQAIPSQAMEILPSAIDTRVPRGPRSTLYYRTGHSFQRKQG
YTHSQSTIVRGSYSPTTMNPHAAEFVPGKTSQQSDVADREPSPANPVANSDLDVVSQTTD
EARAETPATEKAGQVEKVVSGKGKENRGKDIVRNSYKTELARQILLSFIVKSVHDSLGPS
RAEPERKPSGSDEASNEQTSVLGKNASGSGRKDPDKQEKATEVTKGLKDTEGFTVVSKRR
RRPQPFMNPINGLYSQPSICTSVS

Transcript Sequence

Transcript ID

Zm00001d026439_T092
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:145891757:145896583:1 gene:Zm00001d026439 gene_biotype:protein_coding transcript_biotype:protein_coding description:Tetratricopeptide repeat (TPR)-like superfamily protein
Sequence

AGGCAACTGTATATCAACAGAAGGCACTTGATATCAATGAAAGGGAGCTTGGTCTTGATC
ATCCGGAAACTATGAAGAGTTATGGGGATTTATCTGTCTTCTATTATCGCCTTCAACACA
TTGAAATGGCTCTAAAGTATGTCAACCGTGCACTATATCTGCTTCAGTTCTCGTGTGGGC
TTTCACACCCGAATTCAGCTGCCACCTACATAAATGTGGCTATGATGGAAGAAGGCATGG
GAAATGTTCATGTTGCTCTTCGATACTTGCATGAAGCCCTGAAGTGCAACAAGAGGTTGC
TAGGAGCTGATCACATCCAGACTGCTGCAAGCTACCATGCCATAGCCATAGCCCTTTCAA
TGATGGACGCGTACTCCCTAAGCGTGCAACATGAACAAACAACCTTGCAGATACTTCAGG
AGAAACTAGGGCAAGATGACCTCCGAACTCAGGATGCTGCTGCATGGCTAGAATATTTTG
AGTCAAAAGCATTAGAACAACAAGAGGCGGCTCGAAGAGGCATGCCAAAACCTGATTCAT
CTATTGCAAGTAAAGGACATCTTAGTGTATCAGATCTTCTTGACTTCATAAGCCCAGACC
AGGAAAGAAAAGAAAGGGATATGCAAAGGAAATGCAGGCGTGCAAAGAATAATATCAGAG
CTCATCATGGTGAATCAGTTGAAGAGAAGGAGAATTTTCAGCTTGTTTCAGGATCTCCTC
TTGAAGCAAGCAAAGACAGTTTTCAAGAAGAAAAACTGGATGTGCATCCTCCTGCTGTAT
TAGAAGAAAATTATGCTGCCCATGATGAGCATAAGCAATGTGATGTTTTATCACCAGAAG
AATATTCTGATGAAGGGTGGCAAGCAGCTAGTATGAGAGGAAGATCTGCAAATGTAAGGA
AGAAAAGCAGTCGCAGGAAACCGGCTCTTATGAAATTAATGGTTGATCATTTTGAAGGTA
GTCATACAGGTTCTGTGTATAGGACTGGTTTACAACCTCAAACAAAAGGAGACAAAGAAG
ATTCTGTAAGTGCTCCTAGCCAGCTTTCATTTGGAAGTTTTTTGAAAACCGACAAGTTGA
ATGGGGATTCCAGCATTGCTGAAGATAAGACGTGCAATGGTAGCGCTAACCAAGAACAAC
GGACAAAGCTAACAGGAATTAACAGGCCAACCAGTATCGCTTCCAAATTCATATCATACA
AAGATGTGGCTGTTTCGCCCCCTGGCACAGTATTGAAACCCATTTTGGAGAAGAAGGAAG
CAAAGGAGAAAGATAGTGGACGTGATATTGACCTAGCACTGTCATCCGAGGAAGAAGATA
AAAAGTTTACAGAAAAAGAGAAAGAAAAGCCAAGTGAGGACAGTAGCAAAGAGATTCTTT
CAATTCAGCGAGATTTAGAGAGTCATGCAGAAATACCTCCTGACAGCAACAGTGATGAAG
GCCCATCTGCAGCTAGTAAAGCGTCTGGAAGCAAACTGTCAGCTTCAGCTCCTCCATTCA
ATCCAGGATCAGTGTTATCAATGTCCCAGCCATACAGCACGGTGGCAGTATATGATGCCA
GTGCTATCCTTCAGGCAATACCAAGTCAAGCAATGGAGATTCTCCCTTCTGCCATTGACA
CTAGAGTGCCTCGTGGTCCTCGGTCCACCTTGTACTATCGTACTGGGCATTCCTTCCAAA
GGAAACAAGGTTACACGCACAGCCAGAGCACTATTGTAAGGGGTAGCTACTCCCCCACAA
CCATGAATCCACATGCTGCTGAATTTGTGCCTGGAAAAACTTCGCAACAATCTGATGTGG
CTGACAGAGAACCCAGTCCTGCTAATCCTGTGGCCAATTCTGATCTGGATGTTGTATCGC
AGACCACAGATGAAGCGAGGGCCGAAACGCCTGCCACAGAAAAGGCAGGTCAGGTTGAGA
AAGTCGTTTCAGGTAAAGGAAAGGAAAACAGGGGGAAAGACATCGTGAGAAACTCATACA
AAACAGAACTTGCAAGGCAAATTTTACTCAGTTTCATTGTGAAGTCGGTGCACGACAGTT
TAGGTCCCTCCCGGGCTGAACCAGAGAGGAAGCCAAGTGGATCAGATGAAGCTAGTAATG
AACAGACCAGCGTCTTAGGCAAGAACGCTTCTGGTTCTGGTCGCAAAGATCCAGATAAAC
AAGAGAAAGCGACGGAGGTTACTAAGGGCCTGAAGGATACAGAGGGATTCACTGTCGTTT
CAAAACGCCGAAGGCGTCCCCAGCCGTTCATGAACCCCATAAATGGCCTATATTCTCAGC
CGTCTATTTGCACCTCTGTCAGTTAAGGTCATTGCGTTTTCGAAGACCTGCAATATTTTG
AGAGATGGACCTTTGCCTTCGCCTTTGCCTTTGCTTAGAGGATTGGTAGCAGAGATTTTC
CCTATCCAAGTGAGCTGTGAGCAGCGAGCATTTAGTTAAACTGTACAAAAGGTTTCCGGG
ATACCCTTTTTGTAATAAAAGAAACTGATGTATTCCGCAGTAGCTGTAGCGCTGGATATA
ATGTTCCTTTGTATGTTATATATGACAGAATCATAGGAAATAGCAGATGTTAAGTTAATC