Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d026337_T017
CDS Infomation	cds chromosome:B73_RefGen_v4:10:143786947:143795828:-1 gene:Zm00001d026337 gene_biotype:protein_coding transcript_biotype:protein_coding description:Starch synthase IIIb-1
Sequence	ATGGAGATGAATCTCCGGGCGGAGAGCCCACTCTGCTCCCGGGGCCGCCCCGCCCTCGTC GTGCGCCCGGCCGCTGCAGCCACTGGCCTCGCGCTGTCTGTCGTAAGGTGCAGCAGATTT ACGAGAGGCGGGCTCGTTCGATGCATGGTATCAAGTTCAGATTATCCCAAGAGGAATCCG AGGAGGGCATCGACTTCTAAGAGCAAGGGCGTTGCCTCTGGAGGGTATGCTTCGAGACCT ACTGCTGAATCCAGTACGAAGAAGATAGAACAGAGCAGGAACAATGAAGGTGATTTCAGC AGAGCCAATGGGTCACTCTATGGCGAGGCAGCAGAGCAGGCAAGTACTGCTGAAGAATCG TCTCAGGTTTACATGACAGGAGACATTTTAAGTGGCGCAGAAAGGGACGGAGCTGGTACC GAAGAAGAGGCTGACCAAAATCAATCTTCAGCGTTGCCTTCCGCGTCCATGGATGATGAC TCAATCGACCGGCAACTTGATGAGTACCGTGGTAAAATAAGTGCTCTAGTAAGTTCCAAA CCTGAACCTTCGTCACTTGCAAGTGTTGCTGGACAAAACGAATCAGTTGGCGGTTTTCAC GGCCAGCACGAACCAATAACTGGTTCTGAGGAACATGGCAGTTCAATTGTTGATGCACCA ACAAAAGGCAGGCTATTTGCTGAGGCCGTTGTGGGTCATAAGGATTTTACTGAATCAGCA GCAGGAAAGGCAAGCAGCGAGAATGAGGAAGGGCAAGCTGTCTCGTTAGAAGATGATGTC GGGATAAGTACAGACGCAGATGAAGAGCTTCCGGTATCTGAAGATGATCCAGAAGTGCTA CTGAGGAGGCTTCAAGAGCTTGCTGATGAGAATTATTCGACTGGGAACAACTGTTTTGTT TTCCCTGAAGTAGTGAAGGCTGATTCGATGATTGATCTTTACTTAAACCGCAGCATGTCG GCCTTAGCTAGTGAGTCCGACGTTTTTGTAAAAGGAGCATTCAATGGTTGGAGATGGAAC CGTTTCACTGAAACAATGCATAGAAGCGAATTAAGAGGGGATTGGTGGTGCTGCAAGCTC TACATTCCCAAGCAGGCATACAGACTAGACTTTGTATTCTTTAACGGTGACACTGTCTAT GAAAATAACAATCACAACGATTTTTTCCTGGAAATAGAAAGTGACATAGATGAACACTCA TTTGAGGACTTCTTGGTTGAAGAAAAGCGAAAGGAACTCGAGAGGCTTGCTGCAGAAGAA GCTGAAAGGAAAAGACAAGCTGAGGAGCGGCACAGGAGAGAGGAAGAAAGGGCCGCGATG GAAGCTGACAGGGCACAAGCAAGGTCTGAGGTCGAGATGAAGAAAGAGAAATTGCGCCAG ATGTTGAGTTCGGCTAGCAGATATGCTGAGAACTTATGGTACATAGAACCTAACACCTAC AGAGGAGGAGACAGAGTTAGATTGTACTATAATAGAAGCTCGAGATCACTAATGCATAAC ACTGAGATTTGGATGCATGGAGGTTATAACAACTGGATTGATGGACTCTCAATAGCTGAA AGACTTGTCAAATCTCATGAAAAGGAAGGCGATTGGTGGTATGTAGAAGTTACATTACCT GAAAGGGCATTGGTGTTGGATTGGGTTTTTGCTGATGGACCACCTGGGAATGCATGGAAT TATGATAACAATGGAAGGCAGGATTTTCATGCCATCGTTCCTAATAACATATCGGATGAT ATCTTTTGGGTGGAAGAAGAACATAGGATCTTTACAAGGCTTCAACAAGAGAGAAGAGAA AGGGAGAGTGCCGAAAGAATAAAGGCTGAGAGATCTGCAAAAATGAAGGCTGAGATGAAG GAAAAGACTATGAGAGCGTTTCTGCTCTCACAAAAACATATTGTGTATACTGAGCCACTC GAAGTACGTGCAGGAACCACTGTGGACGTTCTTTATAATCCTTCTAACACAGTGCTGAAT GGAAAGTCAGAGGTTTGGTTCAGAGGTTCCTTTAACCGTTGGACTCATCCAAGTGGTCCC TTACCACCACAGAAGATGGTAAAGGCTGAGAATAGTTCACACTTACGAACAACAGTCAGT GTTCCCCTGGATGCATATATGATGGACTTTGTTTTCTCTGAGTCGGAAGAAGGTGGAAGA TATGACAATAGGAATGGGATGGATTATCATATTCCTGTGTCTGATTCGGTTGCAAGGGAA CCTCCAATGCATATTGTGCACATTGCAGTGGAAATGGCTCCTATCGCAAAGGTTGGAGGC CTTGGTGATGTTGTTACAAGCCTTTCACGAGCTGTTCAGGATTTAGGCCATAAAGTTGAG GTTATTCTGCCGAAGTATGATTGTTTAATCCTAAGCAGTGTGAAGGATTTACACTACCAA CAAAGTTTTGCTTCGGGTGGCACAGAGGTAAAAGTATGGTTTGGAAAGGTTGAAGATCTG CCAGTTTACTTCTTGGAACCACAAAATGGCATGTTTTGGGTTGGATGTGTCTATGGGAAG AATGATGAGAGTAGATTTGGCTTCTTCTGTCATTCTGCTCTGGAGTTTCTGCTCCAAAAA GGATCTTCTCCTGATATCATACATTGTCATGACTGGTCAAGTGCTCCCGTTGCTTGGCTA TACAAGGAACAGTATGCTCTTAATGGGATGGGAAATGGTCGGATTGTATTTACCATCCAC AATCTTGAGTTTGGAGCGCATCACATTGGCAAGGCAATGGCACATTGTGACAAGGCTACA ACTGTCTCTGATACATATTCAAAGGAAGTGGCTGGACACGGAGCTATTGCACCTCACTAC TATAAATTCCATGGAATTCGAAATGGAATTGATCCTGACATTTGGGATCCATATACTGAC AGATTTATTCCGGTTCATTATACATCAGAGAATGTTCTTGAGGGCAAGAGTGCTGCAAAA AAGGCATTGCAGCAGATGCTTGGATTACAGCAAACTGATAGCCCTGTTGTTGGAATCATC ACTCGTCTAACAGTGCAGAAGGGAATCCACCTTATCAAACATGCAATGCATCGAGCTCTT GAACGCAATGGGCAGGTGGTTTTACTGGGTTCTGCACCAGATCATCGCATACAAGGTGAC TTTACAAATTTAGCCAGTAAGCTGCATGGTGAATACCATGGCCGGGTGAAGCTATGTTTA ACCTATGACGAGCCACTGTCACATTTGATATATGCTGGCGCAGACTTCATTCTTGTTCCT TCCATCTTCGAACCTTGTGGTTTAACACAGCTTATTGCTATGCGCTACGGATCCATCCCG ATTGTTCGGAAAACTGGAGGCCTGTACGACACCGTCTTTGACGTCGACGATGATAAGGAT CGGGCTCAAGCACAAGGCCTCGAGCCAAATGGATTCAGTTTCGAAGGAGCTGATAGCAGT GGCGTAGATTATGCTCTCGACAGAGCTATAACCGCGTTTTATGATGCCCGCGACTGGTTC AACTCCCTTAGCAAGAGGGTAATGGAGCAAGATTGGTCATGGAATAGACCTGCACTAGAC TACATGGAGTTGTACCATTCTGCTCGCAAAAACTGA

Peptide Sequence

PEP ID	Zm00001d026337_P017
PEP Infomation	pep chromosome:B73_RefGen_v4:10:143786947:143795828:-1 gene:Zm00001d026337 transcript:Zm00001d026337_T017 gene_biotype:protein_coding transcript_biotype:protein_coding description:Starch synthase IIIb-1
Sequence	MEMNLRAESPLCSRGRPALVVRPAAAATGLALSVVRCSRFTRGGLVRCMVSSSDYPKRNP RRASTSKSKGVASGGYASRPTAESSTKKIEQSRNNEGDFSRANGSLYGEAAEQASTAEES SQVYMTGDILSGAERDGAGTEEEADQNQSSALPSASMDDDSIDRQLDEYRGKISALVSSK PEPSSLASVAGQNESVGGFHGQHEPITGSEEHGSSIVDAPTKGRLFAEAVVGHKDFTESA AGKASSENEEGQAVSLEDDVGISTDADEELPVSEDDPEVLLRRLQELADENYSTGNNCFV FPEVVKADSMIDLYLNRSMSALASESDVFVKGAFNGWRWNRFTETMHRSELRGDWWCCKL YIPKQAYRLDFVFFNGDTVYENNNHNDFFLEIESDIDEHSFEDFLVEEKRKELERLAAEE AERKRQAEERHRREEERAAMEADRAQARSEVEMKKEKLRQMLSSASRYAENLWYIEPNTY RGGDRVRLYYNRSSRSLMHNTEIWMHGGYNNWIDGLSIAERLVKSHEKEGDWWYVEVTLP ERALVLDWVFADGPPGNAWNYDNNGRQDFHAIVPNNISDDIFWVEEEHRIFTRLQQERRE RESAERIKAERSAKMKAEMKEKTMRAFLLSQKHIVYTEPLEVRAGTTVDVLYNPSNTVLN GKSEVWFRGSFNRWTHPSGPLPPQKMVKAENSSHLRTTVSVPLDAYMMDFVFSESEEGGR YDNRNGMDYHIPVSDSVAREPPMHIVHIAVEMAPIAKVGGLGDVVTSLSRAVQDLGHKVE VILPKYDCLILSSVKDLHYQQSFASGGTEVKVWFGKVEDLPVYFLEPQNGMFWVGCVYGK NDESRFGFFCHSALEFLLQKGSSPDIIHCHDWSSAPVAWLYKEQYALNGMGNGRIVFTIH NLEFGAHHIGKAMAHCDKATTVSDTYSKEVAGHGAIAPHYYKFHGIRNGIDPDIWDPYTD RFIPVHYTSENVLEGKSAAKKALQQMLGLQQTDSPVVGIITRLTVQKGIHLIKHAMHRAL ERNGQVVLLGSAPDHRIQGDFTNLASKLHGEYHGRVKLCLTYDEPLSHLIYAGADFILVP SIFEPCGLTQLIAMRYGSIPIVRKTGGLYDTVFDVDDDKDRAQAQGLEPNGFSFEGADSS GVDYALDRAITAFYDARDWFNSLSKRVMEQDWSWNRPALDYMELYHSARKN

Transcript Sequence

Transcript ID	Zm00001d026337_T017
Transcript Infomation	cdna chromosome:B73_RefGen_v4:10:143786947:143795828:-1 gene:Zm00001d026337 gene_biotype:protein_coding transcript_biotype:protein_coding description:Starch synthase IIIb-1
Sequence	CCGAGGAGGGGGATCAGGTGGAGTGAGCGAGGGGGAGGTTTTGCCGCCGGCAATGGAGAT GAATCTCCGGGCGGAGAGCCCACTCTGCTCCCGGGGCCGCCCCGCCCTCGTCGTGCGCCC GGCCGCTGCAGCCACTGGCCTCGCGCTGTCTGTCGTAAGGTGCAGCAGATTTACGAGAGG CGGGCTCGTTCGATGCATGGTATCAAGTTCAGATTATCCCAAGAGGAATCCGAGGAGGGC ATCGACTTCTAAGAGCAAGGGCGTTGCCTCTGGAGGGTATGCTTCGAGACCTACTGCTGA ATCCAGTACGAAGAAGATAGAACAGAGCAGGAACAATGAAGGTGATTTCAGCAGAGCCAA TGGGTCACTCTATGGCGAGGCAGCAGAGCAGGCAAGTACTGCTGAAGAATCGTCTCAGGT TTACATGACAGGAGACATTTTAAGTGGCGCAGAAAGGGACGGAGCTGGTACCGAAGAAGA GGCTGACCAAAATCAATCTTCAGCGTTGCCTTCCGCGTCCATGGATGATGACTCAATCGA CCGGCAACTTGATGAGTACCGTGGTAAAATAAGTGCTCTAGTAAGTTCCAAACCTGAACC TTCGTCACTTGCAAGTGTTGCTGGACAAAACGAATCAGTTGGCGGTTTTCACGGCCAGCA CGAACCAATAACTGGTTCTGAGGAACATGGCAGTTCAATTGTTGATGCACCAACAAAAGG CAGGCTATTTGCTGAGGCCGTTGTGGGTCATAAGGATTTTACTGAATCAGCAGCAGGAAA GGCAAGCAGCGAGAATGAGGAAGGGCAAGCTGTCTCGTTAGAAGATGATGTCGGGATAAG TACAGACGCAGATGAAGAGCTTCCGGTATCTGAAGATGATCCAGAAGTGCTACTGAGGAG GCTTCAAGAGCTTGCTGATGAGAATTATTCGACTGGGAACAACTGTTTTGTTTTCCCTGA AGTAGTGAAGGCTGATTCGATGATTGATCTTTACTTAAACCGCAGCATGTCGGCCTTAGC TAGTGAGTCCGACGTTTTTGTAAAAGGAGCATTCAATGGTTGGAGATGGAACCGTTTCAC TGAAACAATGCATAGAAGCGAATTAAGAGGGGATTGGTGGTGCTGCAAGCTCTACATTCC CAAGCAGGCATACAGACTAGACTTTGTATTCTTTAACGGTGACACTGTCTATGAAAATAA CAATCACAACGATTTTTTCCTGGAAATAGAAAGTGACATAGATGAACACTCATTTGAGGA CTTCTTGGTTGAAGAAAAGCGAAAGGAACTCGAGAGGCTTGCTGCAGAAGAAGCTGAAAG GAAAAGACAAGCTGAGGAGCGGCACAGGAGAGAGGAAGAAAGGGCCGCGATGGAAGCTGA CAGGGCACAAGCAAGGTCTGAGGTCGAGATGAAGAAAGAGAAATTGCGCCAGATGTTGAG TTCGGCTAGCAGATATGCTGAGAACTTATGGTACATAGAACCTAACACCTACAGAGGAGG AGACAGAGTTAGATTGTACTATAATAGAAGCTCGAGATCACTAATGCATAACACTGAGAT TTGGATGCATGGAGGTTATAACAACTGGATTGATGGACTCTCAATAGCTGAAAGACTTGT CAAATCTCATGAAAAGGAAGGCGATTGGTGGTATGTAGAAGTTACATTACCTGAAAGGGC ATTGGTGTTGGATTGGGTTTTTGCTGATGGACCACCTGGGAATGCATGGAATTATGATAA CAATGGAAGGCAGGATTTTCATGCCATCGTTCCTAATAACATATCGGATGATATCTTTTG GGTGGAAGAAGAACATAGGATCTTTACAAGGCTTCAACAAGAGAGAAGAGAAAGGGAGAG TGCCGAAAGAATAAAGGCTGAGAGATCTGCAAAAATGAAGGCTGAGATGAAGGAAAAGAC TATGAGAGCGTTTCTGCTCTCACAAAAACATATTGTGTATACTGAGCCACTCGAAGTACG TGCAGGAACCACTGTGGACGTTCTTTATAATCCTTCTAACACAGTGCTGAATGGAAAGTC AGAGGTTTGGTTCAGAGGTTCCTTTAACCGTTGGACTCATCCAAGTGGTCCCTTACCACC ACAGAAGATGGTAAAGGCTGAGAATAGTTCACACTTACGAACAACAGTCAGTGTTCCCCT GGATGCATATATGATGGACTTTGTTTTCTCTGAGTCGGAAGAAGGTGGAAGATATGACAA TAGGAATGGGATGGATTATCATATTCCTGTGTCTGATTCGGTTGCAAGGGAACCTCCAAT GCATATTGTGCACATTGCAGTGGAAATGGCTCCTATCGCAAAGGTTGGAGGCCTTGGTGA TGTTGTTACAAGCCTTTCACGAGCTGTTCAGGATTTAGGCCATAAAGTTGAGGTTATTCT GCCGAAGTATGATTGTTTAATCCTAAGCAGTGTGAAGGATTTACACTACCAACAAAGTTT TGCTTCGGGTGGCACAGAGGTAAAAGTATGGTTTGGAAAGGTTGAAGATCTGCCAGTTTA CTTCTTGGAACCACAAAATGGCATGTTTTGGGTTGGATGTGTCTATGGGAAGAATGATGA GAGTAGATTTGGCTTCTTCTGTCATTCTGCTCTGGAGTTTCTGCTCCAAAAAGGATCTTC TCCTGATATCATACATTGTCATGACTGGTCAAGTGCTCCCGTTGCTTGGCTATACAAGGA ACAGTATGCTCTTAATGGGATGGGAAATGGTCGGATTGTATTTACCATCCACAATCTTGA GTTTGGAGCGCATCACATTGGCAAGGCAATGGCACATTGTGACAAGGCTACAACTGTCTC TGATACATATTCAAAGGAAGTGGCTGGACACGGAGCTATTGCACCTCACTACTATAAATT CCATGGAATTCGAAATGGAATTGATCCTGACATTTGGGATCCATATACTGACAGATTTAT TCCGGTTCATTATACATCAGAGAATGTTCTTGAGGGCAAGAGTGCTGCAAAAAAGGCATT GCAGCAGATGCTTGGATTACAGCAAACTGATAGCCCTGTTGTTGGAATCATCACTCGTCT AACAGTGCAGAAGGGAATCCACCTTATCAAACATGCAATGCATCGAGCTCTTGAACGCAA TGGGCAGGTGGTTTTACTGGGTTCTGCACCAGATCATCGCATACAAGGTGACTTTACAAA TTTAGCCAGTAAGCTGCATGGTGAATACCATGGCCGGGTGAAGCTATGTTTAACCTATGA CGAGCCACTGTCACATTTGATATATGCTGGCGCAGACTTCATTCTTGTTCCTTCCATCTT CGAACCTTGTGGTTTAACACAGCTTATTGCTATGCGCTACGGATCCATCCCGATTGTTCG GAAAACTGGAGGCCTGTACGACACCGTCTTTGACGTCGACGATGATAAGGATCGGGCTCA AGCACAAGGCCTCGAGCCAAATGGATTCAGTTTCGAAGGAGCTGATAGCAGTGGCGTAGA TTATGCTCTCGACAGAGCTATAACCGCGTTTTATGATGCCCGCGACTGGTTCAACTCCCT TAGCAAGAGGGTAATGGAGCAAGATTGGTCATGGAATAGACCTGCACTAGACTACATGGA GTTGTACCATTCTGCTCGCAAAAACTGATACATATTATCACAAGAGAAAACAGGCTCAGT TTGCCCAGTTTATGAGCATCTCAGCCTCTCAGGCCTCTGTGCAAATTCAATTTGCACACT GGGAAGAAAAAGAGTACTGATTGGCCTTGTGGTTGTGCATGACCGCCGTCCAAGGTCCAA CGATGCAACACAGAGTGTATAGTTAGAGAATGTCACCCGTTGTACGTTACTGCCGTTACA TGCATGTGTAT