Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d026195_T008
CDS Infomation

cds chromosome:B73_RefGen_v4:10:140696686:140704624:-1 gene:Zm00001d026195 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transducin family protein / WD-40 repeat family protein
Sequence

ATGGCTTCGACGCATGTTTATAAGAAGAACTACCGCTGCGACCGCTCCCTGCAGCAGTTC
TACACGGGCGGGCCCTTTGCGGTCGGGCTCGCCCCCGGCGGCGATGGCGAGGGCGGCGCC
GAGGCTGAGGCCTTCCTCGCGTGCGCGTGCGGTGGAGAGGTACGCGTGGTGTCCGCCGCG
GACGCCTCCGCCATAGGGGAGCCCGTCGACGGAGACTCGGAGGCCATCACCGCGCTAGCG
CTGTCCCCCGACTCACGGCTCATATTCGCCGCGGGCCACAGCAGGCTTATTAGGGTCTGG
GACCTCGCGTCCCGAACTTGCATACGCAGCTGGAAGGGACATGATGGTCCTATCATGGCC
ATGGCATGCCATGCTTCTGGTGGTTTGCTTGCAACTGCCGGAGCAGACAAGAAGGTCTGC
GTATGGGATGTGGATGGTGGATTTTGCACCCATTTTCTTAGAGGTCATATGGGCGTTGTG
ACAACCATTATGTTTCACAAAGATCCAAAGCGCCTTTTGTTGTTTTCAGGAAGTGAAGAT
GGCACTGTGCGAGTGTGGAACCTTGAAACCAAAAAATGTGTTGCTGTTCTTAAAGAGCAT
TTTTCAGCAGTCACTTCATTGGCATTGTCTGATGATGGACAAACATTGCTCAGCGCTGGG
AGGGATAAGATTGTTACCGCATGGGATATTCGTAAGTACAGCTCAAAGAAGACAATACCG
ACATATGAAATGATAGAAGCTGTTTCCTTCATTGGATCAGGAAGTGAGCTCTTGGCTTGT
TTGGGCATAGAACTGGCAAATATAAAGGAGAAATCTGCTGGTTATTTTCTTACAGTTGGT
GAACGTGGGGTCGTGCGTGTCTGGTGCTTGGAGAGTTGTGTTTGCGTGTTCGAGCAGCAA
ACATCTGATGTAACTGTTAACTCAGAGAACGAGGAAACCAGGAGGGGCTTTACATCTGCT
GTTATGTTGCCAAATGATCAAGGATTGCTATGTGTTACTGCTGATCAGCAGTTTTTGTTC
TATTGTCCCAAAAGAACTGATGATGGGGACTTTGAACTGTCTCTATATAGACGACTAATA
GGTTATAATGATGAGATTCTTGACTTGAAGTTTATCGGGGAGGAGGAACAATACCTTGCC
GTGGCTACCAACTTGGAGCAGGTCCGTGTTTACGATGTTGCGTCGATGTCATGTTCTTAT
GTACTCGCTGGCCACACTGAAATAGTTGTTTGCATTGACACCTGTGTCTCTGCTTCCGGG
AAGACACTTGTCGTAACTGGGAGCAAGGATCATACTGTAAGGTTATGGGATGCCGAAAGA
AAAGGCTGTATTGGCATTGGCAAAGGCCATCTGGGAGCTGTTGGTTCTGTTGCCTTCTCA
AAGAAAACAAATAACTTTTTTGTTAGTGGCAGCAGTGATCGAACCATCAAGGTATGGACC
TGGGACGATGCACTTGGTGATGCTGAGGATGAAGTCCCTCTTAAAGCAAAGGCTGTTGTA
GCTGCACATGATAAAGATATTAATTCTCTGGCAATTTCACCTAATGATGGCCTTGTTTGC
AGTGGTTCTGAGGACCGAACTGCTTGCATATGGAAGCTCCCTAACCTAGTGTTATCTGTT
GTCCTTAAGGGACACAAAAGAGGAATCTGGTCAGTTGAGTTTTCTTCTGTTGAACAATGT
GTAATGACGTCCTCTGGTGATAGAACAATCAAAATATGGTCCGTTGCTGATGGCTCATGC
TTGAAGACATTTGAAGGTCATACATCAAGTGTTCTGCGAGCTTCTTTCCTTTCACGTGGA
ACTCAAGTTATTTCTTGCGGAAGTGATGGTCTAGTGAAGCTATGGACAATCAAGACAAAT
GAATGTATTGCTACTTATGATAAGCATGATGGGAAGGTCTGGGCATTGGCTGTTGGCATG
AAAACTGAAATGGTTGCTACTGGTGGAACCGATGCTGTCCTCAACCTGTGGCATGATTCC
ACCATGGAAGATAAGCAGGAAGATTTTCGTAAGAAGGAGGAAGAAGTTTTAAGAGGCCAG
GAATTGGAAAATGCTGTGTCAGATTCTGACTACGCAAAGGCAATACAACTTGCATTTGAG
CTTAGAAGACCACACAGACTTCTAGATTTATTCTCAAAGCTTGCAAGGAGAGCTGATGCA
GAGGATCCAATAGAAAAGGCTCTTCTTGGTCTTCCAACGGATGGCCTTCGCGTGCTTCTT
GAATACGTCCGTGAATGGAATACGAAGCCCAAGTTCTGTCATGTTGCACAGTTTGTGCTT
TTTCGGTTATTGAGGAGTTTCTCTCCCACTGATATCCTGGAGATCAAGGGCATCAGTGAG
CTCCTTGAGGGCCTTATTCCGTATTCGCAGAGGCATTTCAGCCGAGTCGATAGACTAGTC
CGAAGCACGTTTCTGTTGGACTATACGCTGATGCGAATGTCCGTGGTAGATCCAGATGTA
GATGCGGGAACAATCAAAGATGAAATGAACGGTTCGTCTGTGGAGAACGGTGAACTTGCA
GAGCCTCGGCCTGCTTCACCTGTACCACAGAAGTCAAGCAAGAAGAGAAAATCTGGCAAA
TCAGGTAAAAAGGGCAAGGAGAAGAAGGTGAAGGTTGCCTCAAGCGGACTACTCAGCAAG
GATGTTTCTGTTGAACCCTAA

Peptide Sequence

PEP ID

Zm00001d026195_P008
PEP Infomation

pep chromosome:B73_RefGen_v4:10:140696686:140704624:-1 gene:Zm00001d026195 transcript:Zm00001d026195_T008 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transducin family protein / WD-40 repeat family protein
Sequence

MASTHVYKKNYRCDRSLQQFYTGGPFAVGLAPGGDGEGGAEAEAFLACACGGEVRVVSAA
DASAIGEPVDGDSEAITALALSPDSRLIFAAGHSRLIRVWDLASRTCIRSWKGHDGPIMA
MACHASGGLLATAGADKKVCVWDVDGGFCTHFLRGHMGVVTTIMFHKDPKRLLLFSGSED
GTVRVWNLETKKCVAVLKEHFSAVTSLALSDDGQTLLSAGRDKIVTAWDIRKYSSKKTIP
TYEMIEAVSFIGSGSELLACLGIELANIKEKSAGYFLTVGERGVVRVWCLESCVCVFEQQ
TSDVTVNSENEETRRGFTSAVMLPNDQGLLCVTADQQFLFYCPKRTDDGDFELSLYRRLI
GYNDEILDLKFIGEEEQYLAVATNLEQVRVYDVASMSCSYVLAGHTEIVVCIDTCVSASG
KTLVVTGSKDHTVRLWDAERKGCIGIGKGHLGAVGSVAFSKKTNNFFVSGSSDRTIKVWT
WDDALGDAEDEVPLKAKAVVAAHDKDINSLAISPNDGLVCSGSEDRTACIWKLPNLVLSV
VLKGHKRGIWSVEFSSVEQCVMTSSGDRTIKIWSVADGSCLKTFEGHTSSVLRASFLSRG
TQVISCGSDGLVKLWTIKTNECIATYDKHDGKVWALAVGMKTEMVATGGTDAVLNLWHDS
TMEDKQEDFRKKEEEVLRGQELENAVSDSDYAKAIQLAFELRRPHRLLDLFSKLARRADA
EDPIEKALLGLPTDGLRVLLEYVREWNTKPKFCHVAQFVLFRLLRSFSPTDILEIKGISE
LLEGLIPYSQRHFSRVDRLVRSTFLLDYTLMRMSVVDPDVDAGTIKDEMNGSSVENGELA
EPRPASPVPQKSSKKRKSGKSGKKGKEKKVKVASSGLLSKDVSVEP

Transcript Sequence

Transcript ID

Zm00001d026195_T008
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:140696686:140704624:-1 gene:Zm00001d026195 gene_biotype:protein_coding transcript_biotype:protein_coding description:Transducin family protein / WD-40 repeat family protein
Sequence

CGGCGACACCCTCAACGCTTTCCCTACTCTGTCCAGCAGCCTGAGTGCCTGACTTAACTT
TGCTTAAACCCTCTTCTCCCTCCATCTCCCGCGCCGCCGCCGCAAAACCCTAGCTCCGAC
GCCCCTCCGCCGTTGCCGCGGCCGCCAGAACCAGCCATGGCTTCGACGCATGTTTATAAG
AAGAACTACCGCTGCGACCGCTCCCTGCAGCAGTTCTACACGGGCGGGCCCTTTGCGGTC
GGGCTCGCCCCCGGCGGCGATGGCGAGGGCGGCGCCGAGGCTGAGGCCTTCCTCGCGTGC
GCGTGCGGTGGAGAGGTACGCGTGGTGTCCGCCGCGGACGCCTCCGCCATAGGGGAGCCC
GTCGACGGAGACTCGGAGGCCATCACCGCGCTAGCGCTGTCCCCCGACTCACGGCTCATA
TTCGCCGCGGGCCACAGCAGGCTTATTAGGGTCTGGGACCTCGCGTCCCGAACTTGCATA
CGCAGCTGGAAGGGACATGATGGTCCTATCATGGCCATGGCATGCCATGCTTCTGGTGGT
TTGCTTGCAACTGCCGGAGCAGACAAGAAGGTCTGCGTATGGGATGTGGATGGTGGATTT
TGCACCCATTTTCTTAGAGGTCATATGGGCGTTGTGACAACCATTATGTTTCACAAAGAT
CCAAAGCGCCTTTTGTTGTTTTCAGGAAGTGAAGATGGCACTGTGCGAGTGTGGAACCTT
GAAACCAAAAAATGTGTTGCTGTTCTTAAAGAGCATTTTTCAGCAGTCACTTCATTGGCA
TTGTCTGATGATGGACAAACATTGCTCAGCGCTGGGAGGGATAAGATTGTTACCGCATGG
GATATTCGTAAGTACAGCTCAAAGAAGACAATACCGACATATGAAATGATAGAAGCTGTT
TCCTTCATTGGATCAGGAAGTGAGCTCTTGGCTTGTTTGGGCATAGAACTGGCAAATATA
AAGGAGAAATCTGCTGGTTATTTTCTTACAGTTGGTGAACGTGGGGTCGTGCGTGTCTGG
TGCTTGGAGAGTTGTGTTTGCGTGTTCGAGCAGCAAACATCTGATGTAACTGTTAACTCA
GAGAACGAGGAAACCAGGAGGGGCTTTACATCTGCTGTTATGTTGCCAAATGATCAAGGA
TTGCTATGTGTTACTGCTGATCAGCAGTTTTTGTTCTATTGTCCCAAAAGAACTGATGAT
GGGGACTTTGAACTGTCTCTATATAGACGACTAATAGGTTATAATGATGAGATTCTTGAC
TTGAAGTTTATCGGGGAGGAGGAACAATACCTTGCCGTGGCTACCAACTTGGAGCAGGTC
CGTGTTTACGATGTTGCGTCGATGTCATGTTCTTATGTACTCGCTGGCCACACTGAAATA
GTTGTTTGCATTGACACCTGTGTCTCTGCTTCCGGGAAGACACTTGTCGTAACTGGGAGC
AAGGATCATACTGTAAGGTTATGGGATGCCGAAAGAAAAGGCTGTATTGGCATTGGCAAA
GGCCATCTGGGAGCTGTTGGTTCTGTTGCCTTCTCAAAGAAAACAAATAACTTTTTTGTT
AGTGGCAGCAGTGATCGAACCATCAAGGTATGGACCTGGGACGATGCACTTGGTGATGCT
GAGGATGAAGTCCCTCTTAAAGCAAAGGCTGTTGTAGCTGCACATGATAAAGATATTAAT
TCTCTGGCAATTTCACCTAATGATGGCCTTGTTTGCAGTGGTTCTGAGGACCGAACTGCT
TGCATATGGAAGCTCCCTAACCTAGTGTTATCTGTTGTCCTTAAGGGACACAAAAGAGGA
ATCTGGTCAGTTGAGTTTTCTTCTGTTGAACAATGTGTAATGACGTCCTCTGGTGATAGA
ACAATCAAAATATGGTCCGTTGCTGATGGCTCATGCTTGAAGACATTTGAAGGTCATACA
TCAAGTGTTCTGCGAGCTTCTTTCCTTTCACGTGGAACTCAAGTTATTTCTTGCGGAAGT
GATGGTCTAGTGAAGCTATGGACAATCAAGACAAATGAATGTATTGCTACTTATGATAAG
CATGATGGGAAGGTCTGGGCATTGGCTGTTGGCATGAAAACTGAAATGGTTGCTACTGGT
GGAACCGATGCTGTCCTCAACCTGTGGCATGATTCCACCATGGAAGATAAGCAGGAAGAT
TTTCGTAAGAAGGAGGAAGAAGTTTTAAGAGGCCAGGAATTGGAAAATGCTGTGTCAGAT
TCTGACTACGCAAAGGCAATACAACTTGCATTTGAGCTTAGAAGACCACACAGACTTCTA
GATTTATTCTCAAAGCTTGCAAGGAGAGCTGATGCAGAGGATCCAATAGAAAAGGCTCTT
CTTGGTCTTCCAACGGATGGCCTTCGCGTGCTTCTTGAATACGTCCGTGAATGGAATACG
AAGCCCAAGTTCTGTCATGTTGCACAGTTTGTGCTTTTTCGGTTATTGAGGAGTTTCTCT
CCCACTGATATCCTGGAGATCAAGGGCATCAGTGAGCTCCTTGAGGGCCTTATTCCGTAT
TCGCAGAGGCATTTCAGCCGAGTCGATAGACTAGTCCGAAGCACGTTTCTGTTGGACTAT
ACGCTGATGCGAATGTCCGTGGTAGATCCAGATGTAGATGCGGGAACAATCAAAGATGAA
ATGAACGGTTCGTCTGTGGAGAACGGTGAACTTGCAGAGCCTCGGCCTGCTTCACCTGTA
CCACAGAAGTCAAGCAAGAAGAGAAAATCTGGCAAATCAGGTAAAAAGGGCAAGGAGAAG
AAGGTGAAGGTTGCCTCAAGCGGACTACTCAGCAAGGATGTTTCTGTTGAACCCTAAATA
TCTAGCTGAGAATCTGTTTTTTTTATGCATGCCGCCAATTTTGTAGCTGCTGTTGCAACG
GACGTTGCCCAACACACGAATCCCATATGATGTAAATGCATTTTTGCTGATTTATTAGGA
GGGCGAAGTG