Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d026193_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:10:140678001:140680684:1 gene:Zm00001d026193 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative WEB family protein chloroplastic
Sequence

ATGCAGGGCTCCAGGACCAAATCTGGCTCCGCTGAGGCGAAGGGCAACGGCAAGCCGGAC
AAGGAGAAGAAGGGTGGCGGCGGCACGCCGCCAACTCCCAAGGACAGCAGACCGCGCAAG
CCGGCTGTGCCCAAGGCGAGCGCCGCCAGCCATGGCACGACGCGCGCGGCCGACAAGTCC
CCCGGGTCGGGGTCGGACCGCAAGGAGCAGCTGGTGGAGAACGAGAAGGAAAAGGGCAGA
GTCCTTGCGGAGCTGGAGCGTGCCAAGCAGGCGGCTGATGAGGCCAATGCCAAGCTGCAG
GAGGCGCTTGATGCGCAGAGGAGGGCCGAGGACGCGCAGGAGGCTGACAAACTCCCTGCC
GGCGAGTCGGACCAAGCAAGCATGCACAGCCAGCAGGAGGCTGATGTTACTGCGCTGCGA
TCGGCAGTGGAGCAGCTTGAGAAGGCCAGGTATGAGCTGGCCGACGCAATCGATGCCAGG
AATGAAGCACTCAGCCAGGTAGATGATGCTGTTAGGGCTTCTGAGGTGAAGGCTCAGGAA
GCCGAGCTGCTTACTGCAGAGGTTAAGCGCCTCAAAGGGCTGGTTGATTCCAAGCTGGAT
GGCGAAGCGAAGACTGTAGAGAGGATTCAGAATCTTGAAGCAGAGAACTCTGCATTAAAG
CTCGAGCTCGAGAAAGCAAAGTCTGCTGAAGAGAAGGCTGTTCAATTGGAGCACATGGTT
GATGAACTTAAGAGTGATGTTGATGATGCTAGGAAGTCTGGCTCCAAGTCAGAGCAGTTA
GCTGATGAATGGCAGAAGAAGGCACATCTGCTCGAGGTCAGATTGCAAGAGGCTGACCAG
TCTAATATTTTGAAGGGCGAGTCTTTGAACTCAGCAATGGCAGAATTGGATTCAACAAGT
AGCTTGCTCTATGATAAAGAATCTGAAGTTGTTGCCCTTCGGGACAAAGTCAGGTTCTTG
GAGGATGAGCTGGCAAAGCTCAAGTGTGATATTGATGTGTCGGGCCAACGGGCAAATGCT
GCGGAGAAAGAGGCGGCAGATCTATGGACAGAGGTTGAAGGGCTTAGGTTGAAGGTCTGT
GCAGCGGAAGAAGAGAAAATGGAGGCGCTGAATAGTGTTAGGAATGGTAGGTCAGAAATA
GAGACCTTGAATGAACAGAAGAACCAGCTGGCTGACGAGCTTGAAGCTAGCAAAGATGAG
CTTGAGAAAATTAAGAAGGCAATGGAGGGTCTGGCCTCAGCCTTACAGGAAACATCAGCT
GAATCCAGAGAGATGCAAGAGAAGTACCTTTTCAAACAAGATGAGATTGAGCATGCTCAG
GCACAGGTAGAGGAGCTTAACATGAACCTGAAGAATACTAAAGAGAACTATGAGCTAATG
CTTGATGAAGCAAACTACGAGAAGGTTTGCCTTACCAAATCAGTTGAAAGGCTAGAAGCA
GAAGCTAAGAGTGCGCATGACGAATGGCAGTCTAAAGAGCTAAGTTTTGTCAACTCTATT
AAGAATTCAGAAGAAGAAATAGTCGCTGTCAAAGTTCAGATGGACATGACCTTGGAGGTT
GTTAAGGAGAAAGAAAATGAAAACACTGAGTTGCAGGAGAAGCTGCTGCAGCTTGAGTCT
CAGCTAATGGAAGCTAACAGAATCAGGGAGGAAGCCAACGCTAAAACTATCCAATGGAAG
GAGAAAGTGTTAGACCAAGAGAATGAATTGCAGAACATAAAACAGGAGAACGACGACCTG
CAGGCAAAGGTATCGGCTGCTTCTGAGAAGATTAAGGAACTCTCTTCCCAGCTTGCCAAT
GCAAGAGATGGCACGACGAATGGTAAAGCCAAGGAAGAAGATAATGAGAAGGGCGACACC
GAAAAGGATGACGAACCTGTTGTGGTAGTTGCCAAAGTATGGGAGAACAGCAACTTTGCT
GACTACGATTCATCTAAGGTTAAGGAGAACGATGGCGACTCGCAGGTTGATTTGGAATCA
AACAGGGGCGACGCAGGTGTTGATAGCAACGGCCTGCTCCCAACTAAGCAGAGCAGTGGC
AGGACATCACCAACTAAACAGCACCAGCAGCATAAGAAGAAGCTTTCTCTCAAGAGATTC
GGTGGTCTGCTGAAGAAGAAAAGCGAAAATTAG

Peptide Sequence

PEP ID

Zm00001d026193_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:10:140678001:140680684:1 gene:Zm00001d026193 transcript:Zm00001d026193_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative WEB family protein chloroplastic
Sequence

MQGSRTKSGSAEAKGNGKPDKEKKGGGGTPPTPKDSRPRKPAVPKASAASHGTTRAADKS
PGSGSDRKEQLVENEKEKGRVLAELERAKQAADEANAKLQEALDAQRRAEDAQEADKLPA
GESDQASMHSQQEADVTALRSAVEQLEKARYELADAIDARNEALSQVDDAVRASEVKAQE
AELLTAEVKRLKGLVDSKLDGEAKTVERIQNLEAENSALKLELEKAKSAEEKAVQLEHMV
DELKSDVDDARKSGSKSEQLADEWQKKAHLLEVRLQEADQSNILKGESLNSAMAELDSTS
SLLYDKESEVVALRDKVRFLEDELAKLKCDIDVSGQRANAAEKEAADLWTEVEGLRLKVC
AAEEEKMEALNSVRNGRSEIETLNEQKNQLADELEASKDELEKIKKAMEGLASALQETSA
ESREMQEKYLFKQDEIEHAQAQVEELNMNLKNTKENYELMLDEANYEKVCLTKSVERLEA
EAKSAHDEWQSKELSFVNSIKNSEEEIVAVKVQMDMTLEVVKEKENENTELQEKLLQLES
QLMEANRIREEANAKTIQWKEKVLDQENELQNIKQENDDLQAKVSAASEKIKELSSQLAN
ARDGTTNGKAKEEDNEKGDTEKDDEPVVVVAKVWENSNFADYDSSKVKENDGDSQVDLES
NRGDAGVDSNGLLPTKQSSGRTSPTKQHQQHKKKLSLKRFGGLLKKKSEN

Transcript Sequence

Transcript ID

Zm00001d026193_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:140678001:140680684:1 gene:Zm00001d026193 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative WEB family protein chloroplastic
Sequence

ACGCAGGCGCCGCAATGCAGGGCTCCAGGACCAAATCTGGCTCCGCTGAGGCGAAGGGCA
ACGGCAAGCCGGACAAGGAGAAGAAGGGTGGCGGCGGCACGCCGCCAACTCCCAAGGACA
GCAGACCGCGCAAGCCGGCTGTGCCCAAGGCGAGCGCCGCCAGCCATGGCACGACGCGCG
CGGCCGACAAGTCCCCCGGGTCGGGGTCGGACCGCAAGGAGCAGCTGGTGGAGAACGAGA
AGGAAAAGGGCAGAGTCCTTGCGGAGCTGGAGCGTGCCAAGCAGGCGGCTGATGAGGCCA
ATGCCAAGCTGCAGGAGGCGCTTGATGCGCAGAGGAGGGCCGAGGACGCGCAGGAGGCTG
ACAAACTCCCTGCCGGCGAGTCGGACCAAGCAAGCATGCACAGCCAGCAGGAGGCTGATG
TTACTGCGCTGCGATCGGCAGTGGAGCAGCTTGAGAAGGCCAGGTATGAGCTGGCCGACG
CAATCGATGCCAGGAATGAAGCACTCAGCCAGGTAGATGATGCTGTTAGGGCTTCTGAGG
TGAAGGCTCAGGAAGCCGAGCTGCTTACTGCAGAGGTTAAGCGCCTCAAAGGGCTGGTTG
ATTCCAAGCTGGATGGCGAAGCGAAGACTGTAGAGAGGATTCAGAATCTTGAAGCAGAGA
ACTCTGCATTAAAGCTCGAGCTCGAGAAAGCAAAGTCTGCTGAAGAGAAGGCTGTTCAAT
TGGAGCACATGGTTGATGAACTTAAGAGTGATGTTGATGATGCTAGGAAGTCTGGCTCCA
AGTCAGAGCAGTTAGCTGATGAATGGCAGAAGAAGGCACATCTGCTCGAGGTCAGATTGC
AAGAGGCTGACCAGTCTAATATTTTGAAGGGCGAGTCTTTGAACTCAGCAATGGCAGAAT
TGGATTCAACAAGTAGCTTGCTCTATGATAAAGAATCTGAAGTTGTTGCCCTTCGGGACA
AAGTCAGGTTCTTGGAGGATGAGCTGGCAAAGCTCAAGTGTGATATTGATGTGTCGGGCC
AACGGGCAAATGCTGCGGAGAAAGAGGCGGCAGATCTATGGACAGAGGTTGAAGGGCTTA
GGTTGAAGGTCTGTGCAGCGGAAGAAGAGAAAATGGAGGCGCTGAATAGTGTTAGGAATG
GTAGGTCAGAAATAGAGACCTTGAATGAACAGAAGAACCAGCTGGCTGACGAGCTTGAAG
CTAGCAAAGATGAGCTTGAGAAAATTAAGAAGGCAATGGAGGGTCTGGCCTCAGCCTTAC
AGGAAACATCAGCTGAATCCAGAGAGATGCAAGAGAAGTACCTTTTCAAACAAGATGAGA
TTGAGCATGCTCAGGCACAGGTAGAGGAGCTTAACATGAACCTGAAGAATACTAAAGAGA
ACTATGAGCTAATGCTTGATGAAGCAAACTACGAGAAGGTTTGCCTTACCAAATCAGTTG
AAAGGCTAGAAGCAGAAGCTAAGAGTGCGCATGACGAATGGCAGTCTAAAGAGCTAAGTT
TTGTCAACTCTATTAAGAATTCAGAAGAAGAAATAGTCGCTGTCAAAGTTCAGATGGACA
TGACCTTGGAGGTTGTTAAGGAGAAAGAAAATGAAAACACTGAGTTGCAGGAGAAGCTGC
TGCAGCTTGAGTCTCAGCTAATGGAAGCTAACAGAATCAGGGAGGAAGCCAACGCTAAAA
CTATCCAATGGAAGGAGAAAGTGTTAGACCAAGAGAATGAATTGCAGAACATAAAACAGG
AGAACGACGACCTGCAGGCAAAGGTATCGGCTGCTTCTGAGAAGATTAAGGAACTCTCTT
CCCAGCTTGCCAATGCAAGAGATGGCACGACGAATGGTAAAGCCAAGGAAGAAGATAATG
AGAAGGGCGACACCGAAAAGGATGACGAACCTGTTGTGGTAGTTGCCAAAGTATGGGAGA
ACAGCAACTTTGCTGACTACGATTCATCTAAGGTTAAGGAGAACGATGGCGACTCGCAGG
TTGATTTGGAATCAAACAGGGGCGACGCAGGTGTTGATAGCAACGGCCTGCTCCCAACTA
AGCAGAGCAGTGGCAGGACATCACCAACTAAACAGCACCAGCAGCATAAGAAGAAGCTTT
CTCTCAAGAGATTCGGTGGTCTGCTGAAGAAGAAAAGCGAAAATTAGCATAAAAACCATC
TGATCATATTCTTTGTTCTATCCTTTGTGGCATATTTCTTTGGCGAGCCATCTATTTCCC
GAGTCTTCACATATGTTATGGAAAGCAGATGATGGATGCTTCAAAGAAGAATACAGAATG
TCGAGTGTATTTAC