Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d026091_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:10:138160694:138165120:1 gene:Zm00001d026091 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase

Sequence

ATGGCGACGCCTCGCTCACCGAGCCCCAGCGCCGCCGCGCGTCTCGATTCTGCGCCGCTG
CTGGGCGGCGCCTCCGGCGGCGGGTCCCGTCGCCGAGATGGAGCGCTTCGCCGGCCCTCC
CTCCGCGGCGCGGCGCGGCTGCTGCGTCGCGGCGGGCGGCGGGCCATGCGGGAGCCCTCG
GTGCTGGTGCGGGAGGCCGCCGCAGAGCACCTCGAGGAGCGGCAGGCTGACTGGGCCTAC
TCCCGCCCCGTCGTGGCGCTCGACCTGCTGTGGAACCTCGCTTTCATCACCGTCGCTGCG
GTCGTGCTCGTGCTCAGCCGCGACGAGGACTCGCCCATGCCGCTCCGGACCTGGGTCGCC
GGCTACGCCCTTCAGTGCGTCGTACACATGATTTGCGTCGCAATCGAGTACAGGATGCGC
CACGGCCAGCGCGGCAGCGCCGTCGCTGGCGCAGCGCCTGCAGACGTGGAAAGGGGCAGC
GACGCATCGTCCTCATCCAGTGACGAGGATGACAGGGAGCTCGATCTCCATGGTCGCCGC
ACTGATTACGCCAGTATTGCGAAGCACTTGGAGTCTGCTAATACAATGTTCTCCTTCATA
TGGTGGATAATTGGATTTTATTGGATATCAGCTGGGGGTGAGGAGGTTATTCAGGATGCA
CCTCAACTTTACTGGCTTTGCATAGTCTTTCTGGCATTTGATGTGTTTTTTGTTGTATTC
TGTGTTGCTCTGGCTTGTATTATTGGTATTGCTGTCTGTTGTTGCCTTCCTTGTATCATA
GCAATTCTCTATGCAGTATCTGATCAGGAAGGAGCATCTGAAGATGACATTCGTCAAATC
CCAAGATACAAATTTCGGCGGACGGATGAGCCTGAGAAGCAAGATGTTGACCCCATGGGT
CCTTTTGGTGGAATAATGATAGAGTGTGGCACCAATCAACCTATTGAGAAAGTGCTTGCA
GCTGAAGATGCAGAGTGTTGTATTTGCCTATCGGCTTACGATGACAGTGCAGAGTTGCGC
GAACTCCCCTGTGGGCACCATTTCCACTGCACCTGTATCGATAAGTGGCTTCACATCAAT
GCAACATGCCCCCTGTGCAAGTACAACATTCGGAAAAGCAGCAGTAGCAGTGGAAGTGAA
GAAGTATGA

Peptide Sequence

PEP ID

Zm00001d026091_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:10:138160694:138165120:1 gene:Zm00001d026091 transcript:Zm00001d026091_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase

Sequence

MATPRSPSPSAAARLDSAPLLGGASGGGSRRRDGALRRPSLRGAARLLRRGGRRAMREPS
VLVREAAAEHLEERQADWAYSRPVVALDLLWNLAFITVAAVVLVLSRDEDSPMPLRTWVA
GYALQCVVHMICVAIEYRMRHGQRGSAVAGAAPADVERGSDASSSSSDEDDRELDLHGRR
TDYASIAKHLESANTMFSFIWWIIGFYWISAGGEEVIQDAPQLYWLCIVFLAFDVFFVVF
CVALACIIGIAVCCCLPCIIAILYAVSDQEGASEDDIRQIPRYKFRRTDEPEKQDVDPMG
PFGGIMIECGTNQPIEKVLAAEDAECCICLSAYDDSAELRELPCGHHFHCTCIDKWLHIN
ATCPLCKYNIRKSSSSSGSEEV

Transcript Sequence

Transcript ID

Zm00001d026091_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:138160694:138165120:1 gene:Zm00001d026091 gene_biotype:protein_coding transcript_biotype:protein_coding description:E3 ubiquitin-protein ligase

Sequence

AAACCCGTCACGGCGTCTTGTTCAGAGGAATTCCATTCCTACGAAGAAAGTATTTCCTTC
CTCCTGAATCCTGATCTCTCACGGAGTTCCCCTGTATGGCGACGCCTCGCTCACCGAGCC
CCAGCGCCGCCGCGCGTCTCGATTCTGCGCCGCTGCTGGGCGGCGCCTCCGGCGGCGGGT
CCCGTCGCCGAGATGGAGCGCTTCGCCGGCCCTCCCTCCGCGGCGCGGCGCGGCTGCTGC
GTCGCGGCGGGCGGCGGGCCATGCGGGAGCCCTCGGTGCTGGTGCGGGAGGCCGCCGCAG
AGCACCTCGAGGAGCGGCAGGCTGACTGGGCCTACTCCCGCCCCGTCGTGGCGCTCGACC
TGCTGTGGAACCTCGCTTTCATCACCGTCGCTGCGGTCGTGCTCGTGCTCAGCCGCGACG
AGGACTCGCCCATGCCGCTCCGGACCTGGGTCGCCGGCTACGCCCTTCAGTGCGTCGTAC
ACATGATTTGCGTCGCAATCGAGTACAGGATGCGCCACGGCCAGCGCGGCAGCGCCGTCG
CTGGCGCAGCGCCTGCAGACGTGGAAAGGGGCAGCGACGCATCGTCCTCATCCAGTGACG
AGGATGACAGGGAGCTCGATCTCCATGGTCGCCGCACTGATTACGCCAGTATTGCGAAGC
ACTTGGAGTCTGCTAATACAATGTTCTCCTTCATATGGTGGATAATTGGATTTTATTGGA
TATCAGCTGGGGGTGAGGAGGTTATTCAGGATGCACCTCAACTTTACTGGCTTTGCATAG
TCTTTCTGGCATTTGATGTGTTTTTTGTTGTATTCTGTGTTGCTCTGGCTTGTATTATTG
GTATTGCTGTCTGTTGTTGCCTTCCTTGTATCATAGCAATTCTCTATGCAGTATCTGATC
AGGAAGGAGCATCTGAAGATGACATTCGTCAAATCCCAAGATACAAATTTCGGCGGACGG
ATGAGCCTGAGAAGCAAGATGTTGACCCCATGGGTCCTTTTGGTGGAATAATGATAGAGT
GTGGCACCAATCAACCTATTGAGAAAGTGCTTGCAGCTGAAGATGCAGAGTGTTGTATTT
GCCTATCGGCTTACGATGACAGTGCAGAGTTGCGCGAACTCCCCTGTGGGCACCATTTCC
ACTGCACCTGTATCGATAAGTGGCTTCACATCAATGCAACATGCCCCCTGTGCAAGTACA
ACATTCGGAAAAGCAGCAGTAGCAGTGGAAGTGAAGAAGTATGAATGCAGTCCGCTTGAC
AATGCCAATCTGTTTCAACTTCTGTTCCGTTGCTAATGTAACTCCAGGCCTTGATGAGTG
TAAATTTTTGTATCCAAAAAAATGTGCTGATAGAGTCAGTTATTTATCAAAGTTACTCAA
AGTGCTGTCAATATGTCATATAAGTTAATAAACAGTTGGGTATGCTTCTGTATTTACTGT
CAGGAATATATTATTAGTTGCATTGTAACTTGTGTCCTTTTGAATGATCCGGGTGTTTTC
CTGCTTGGTTAATGATGACAAAATGTCTTGCATGGTTTCTTATGACAAGAAA