Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d026066_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:10:137455971:137457804:1 gene:Zm00001d026066 gene_biotype:protein_coding transcript_biotype:protein_coding description:Xyloglucan galactosyltransferase XLT2
Sequence

ATGCCCGAGTCACCTGCATCTCCGGCCAAACCCCCCTCGCAGCCGGGATCTCCGCTCAAT
GCCGCCACTCCGTCCCCAGCGTCGGCATTGCTGCGAGGCTCCGTGCTGCTCATCGCCTTC
CTCGTACTCCAGCTCGTGCTCCTCTGGAACATCCTCGGCCTCCCCAGCTCCCGCTTCCTC
CCGGTGCCGGGCCAAAGAGACACTACCTGGCCCAACGGCGCAGTCAACGGCGGAGCGTGC
GATGAGGGGCTCATCTACGTCTACGACCTCCCGTCGGAGTTGAACCACGACCTCGTCGAC
GACTGCGAGAGCCTGTGGCCCTGGTACTCGTTCTGCCCGTACCTAACCAACGGCGGCTTC
GGCGAGGCGGCCGCCACGCTGCCCGTCTTCTTCAACGTCACACGGAACGTGTCGTTGCCC
AGCTGGTACAACACCGACCAGTTCCAGCTCGAGGTCATCATCCACCGCCGCCTCCTCTCC
CACCGGTGCCGCACCACCGACTCGTCGCTGGCCACCGCGTTCTACGTCCCGTTCTACGTC
GGCCTCGACGTTGGCAGCCACCTGTGGGGGGACAACTCTACCGCTGCCGACCGCGACAGG
GCAGGCTTGAGGCTGCTCCGGTGGCTCAAGAACCAGACGTCCTTCCAGAGGTCCGGCGGC
TGGGACCACTTCATCACGCTGGGGCGCATCACGTGGGACTTCCGCCGGTACGGCGACGAC
GGGTGGGGCACCAACTTCGTTGTCCTGCCGGGGATAGCCAACGTGACCCGCCTCGGCATC
GAGGCCGACCGGCTGGACCCCATGGAAGTCGGCGTCCCGTACCCGACCGGCTTCCACCCC
CGCACCGCCGCCGACGTGCGCGCGTGGCAGCGGCACGTGCTCTCCCTCAAGCGCAGCAAG
CTCTTCGGATTCGCCGGTGCGCCGCGCTCCGGGTTCCGGGACGACTTCAGGGAGGTGCTG
CTGGAGGAGTGCGAGGACGCTGGGAGCGAGCACTGCCGCTCCGTGGACTGCCGCGGCACG
CGGTGCACCGACAACGGCGCGGCGGTGCTGGAGCTGTTCCTGGACTCGAGCTTCTGCCTG
CAGCCGCGCGGGGACAGCTTCACGCGGCGCTCGCTGTTCGACTGCATGGTGGCCGGCGCC
GTGCCGGTGCTGTTCTGGCGGCGGACCGCGTACGACCAGTACCGGTGGTACCTGCCCCCG
GGGCCGCGCGGCGAGGAGGGGGAGTGGTCGGTGTTCATCGACCGGCAGGCGCTGCGCGTG
GGCAACGTGAGCGTGCGGGACGTTCTGGAGGGGCTCAGCGAGCGGCGGGTGCGGCGGATG
CGGGAGCGCGTGGTGGAGATGATCCCGCGGCTGGTGTACGCGTCATCGTCCGACGGGCTC
GGCGACGGCATGGAGGACGCCCTCGATGTGGCGCTGCGCGGCGTGCTGGAGCGGTTCCGG
CGGCGCCGGGCGAGCACCGCGCCTGTAGGTGTTTCAGCAAAGCACTCGCCAGGCCGCTTC
GTCGCCCGGAGTGTCGACGGCAAATCGACGCCGCCGCCTCCTTCTGACGGCAAAAATGGT
TCGGTAGCGACGGTCAGTAAGGACGACTCAGGAACAAATCCGAGCCCCCCGGCTTCGTCA
CACATAAAAACCGTCGTGTCCATAGCATCGGCTTCAACTGGAACGAGCTTGCAAAAATCG
TGA

Peptide Sequence

PEP ID

Zm00001d026066_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:10:137455971:137457804:1 gene:Zm00001d026066 transcript:Zm00001d026066_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Xyloglucan galactosyltransferase XLT2
Sequence

MPESPASPAKPPSQPGSPLNAATPSPASALLRGSVLLIAFLVLQLVLLWNILGLPSSRFL
PVPGQRDTTWPNGAVNGGACDEGLIYVYDLPSELNHDLVDDCESLWPWYSFCPYLTNGGF
GEAAATLPVFFNVTRNVSLPSWYNTDQFQLEVIIHRRLLSHRCRTTDSSLATAFYVPFYV
GLDVGSHLWGDNSTAADRDRAGLRLLRWLKNQTSFQRSGGWDHFITLGRITWDFRRYGDD
GWGTNFVVLPGIANVTRLGIEADRLDPMEVGVPYPTGFHPRTAADVRAWQRHVLSLKRSK
LFGFAGAPRSGFRDDFREVLLEECEDAGSEHCRSVDCRGTRCTDNGAAVLELFLDSSFCL
QPRGDSFTRRSLFDCMVAGAVPVLFWRRTAYDQYRWYLPPGPRGEEGEWSVFIDRQALRV
GNVSVRDVLEGLSERRVRRMRERVVEMIPRLVYASSSDGLGDGMEDALDVALRGVLERFR
RRRASTAPVGVSAKHSPGRFVARSVDGKSTPPPPSDGKNGSVATVSKDDSGTNPSPPASS
HIKTVVSIASASTGTSLQKS

Transcript Sequence

Transcript ID

Zm00001d026066_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:137455971:137457804:1 gene:Zm00001d026066 gene_biotype:protein_coding transcript_biotype:protein_coding description:Xyloglucan galactosyltransferase XLT2
Sequence

ATGCCCGAGTCACCTGCATCTCCGGCCAAACCCCCCTCGCAGCCGGGATCTCCGCTCAAT
GCCGCCACTCCGTCCCCAGCGTCGGCATTGCTGCGAGGCTCCGTGCTGCTCATCGCCTTC
CTCGTACTCCAGCTCGTGCTCCTCTGGAACATCCTCGGCCTCCCCAGCTCCCGCTTCCTC
CCGGTGCCGGGCCAAAGAGACACTACCTGGCCCAACGGCGCAGTCAACGGCGGAGCGTGC
GATGAGGGGCTCATCTACGTCTACGACCTCCCGTCGGAGTTGAACCACGACCTCGTCGAC
GACTGCGAGAGCCTGTGGCCCTGGTACTCGTTCTGCCCGTACCTAACCAACGGCGGCTTC
GGCGAGGCGGCCGCCACGCTGCCCGTCTTCTTCAACGTCACACGGAACGTGTCGTTGCCC
AGCTGGTACAACACCGACCAGTTCCAGCTCGAGGTCATCATCCACCGCCGCCTCCTCTCC
CACCGGTGCCGCACCACCGACTCGTCGCTGGCCACCGCGTTCTACGTCCCGTTCTACGTC
GGCCTCGACGTTGGCAGCCACCTGTGGGGGGACAACTCTACCGCTGCCGACCGCGACAGG
GCAGGCTTGAGGCTGCTCCGGTGGCTCAAGAACCAGACGTCCTTCCAGAGGTCCGGCGGC
TGGGACCACTTCATCACGCTGGGGCGCATCACGTGGGACTTCCGCCGGTACGGCGACGAC
GGGTGGGGCACCAACTTCGTTGTCCTGCCGGGGATAGCCAACGTGACCCGCCTCGGCATC
GAGGCCGACCGGCTGGACCCCATGGAAGTCGGCGTCCCGTACCCGACCGGCTTCCACCCC
CGCACCGCCGCCGACGTGCGCGCGTGGCAGCGGCACGTGCTCTCCCTCAAGCGCAGCAAG
CTCTTCGGATTCGCCGGTGCGCCGCGCTCCGGGTTCCGGGACGACTTCAGGGAGGTGCTG
CTGGAGGAGTGCGAGGACGCTGGGAGCGAGCACTGCCGCTCCGTGGACTGCCGCGGCACG
CGGTGCACCGACAACGGCGCGGCGGTGCTGGAGCTGTTCCTGGACTCGAGCTTCTGCCTG
CAGCCGCGCGGGGACAGCTTCACGCGGCGCTCGCTGTTCGACTGCATGGTGGCCGGCGCC
GTGCCGGTGCTGTTCTGGCGGCGGACCGCGTACGACCAGTACCGGTGGTACCTGCCCCCG
GGGCCGCGCGGCGAGGAGGGGGAGTGGTCGGTGTTCATCGACCGGCAGGCGCTGCGCGTG
GGCAACGTGAGCGTGCGGGACGTTCTGGAGGGGCTCAGCGAGCGGCGGGTGCGGCGGATG
CGGGAGCGCGTGGTGGAGATGATCCCGCGGCTGGTGTACGCGTCATCGTCCGACGGGCTC
GGCGACGGCATGGAGGACGCCCTCGATGTGGCGCTGCGCGGCGTGCTGGAGCGGTTCCGG
CGGCGCCGGGCGAGCACCGCGCCTGTAGGTGTTTCAGCAAAGCACTCGCCAGGCCGCTTC
GTCGCCCGGAGTGTCGACGGCAAATCGACGCCGCCGCCTCCTTCTGACGGCAAAAATGGT
TCGGTAGCGACGGTCAGTAAGGACGACTCAGGAACAAATCCGAGCCCCCCGGCTTCGTCA
CACATAAAAACCGTCGTGTCCATAGCATCGGCTTCAACTGGAACGAGCTTGCAAAAATCG
TGA