Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d025963_T005
CDS Infomation	cds chromosome:B73_RefGen_v4:10:134956781:134961766:1 gene:Zm00001d025963 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sphingoid long-chain bases kinase 1
Sequence	ATGGATGGATCCGAGCTTGAAAATCCTACTTCTAGAAGCTCATCCCAGAAATCTAGCCGA CGTTCGAGTAGTAGGCGTTCTCAAAAGTCAGCTGGACAGCATTCTTTGACCGGTGCTCAA GAGAAAAGAAGCAAATCGAAATCTTCAAGGCAGAAACACTTGGTTATTGACGACAAAGAG GCTAAAAAAGGGAAAAAACATGACCACAAAATTGACGTGGCAGATGAGAGGTCCAATTTT CTAGGTTATGAAGTGTATGCTGGAAAGCTGATTCTTCAAAAGAAAAATAGAAGTGCGAGT GATAATAATCAGTTACCGTCAAACGGAAAAGCTGATGCAATTGATGCTAGACTCACAAGT AAAGCTCTGATCTGGGGCAGCTCTGTACTCCTACTGGAGGATGTTGTCTCTGTATCATAT AATTCTGGAGTCAAACATTTTACATTGCATGCATACTCAACTAAAAAGTCTTTATTTAAA AAGACATGCAGAGTTCAGAAAGATTTCTGCTTTATAGCCTCTACCCTTGACGAGGCCATT TTGTGGGTGACATGCTTTGCTGAACAAAGTATATATGTTAACTTACTACCTCGCCTTGGA GCATCTAGTATCAATCAAGACTCAGAAAATCCCCTCAGTGAGTCTTTATTTGACCAGCCA CCGATTAAATGCAAATCTCCGCAAAGAGTACTTGTTATATTGAACCCTCGATCTGGACAT GGTAGATCAAGTAAAGTTTTCCATGAGAAAGCTGAACCTATATTTAAGCTTGCAGGTTTT CAGATGGAAGTTGTTAAAACTACTCATGCTGGGCATGCAAAATCTCTTGTATCTACATTT GATTTCAGTGCATGCCCTGATGGAATCGTGTGCGTGGGTGGTGATGGAATTGTGAATGAG GTGCTCAATGGTCTTCTCATTAGGAGTGATAGAGCAGAAGCTGTATCAATTCCAGTTGGA ATAATTCCTGCAGGGTCTGACAACTCACTTGTCTGGACTGTTTTGGGAGTTAGAGATCCT ATTTCTGCATCATTATTAATTGTTAAGGGTGGTTTCACAGCTCTAGATATCTTGGCTGTC GAGTGGGTTCAATCTGGGCAAATACATTTTGGCTCAACTGTTTCATACTATGGTTTTGTT AGTGATGTCCTGGAACTTTCTGAGAAATATCAGAAGAAATTTGGTCCACTTCGATATTTT GTGGCTGGAATACTGAAATTTTTATGTTTGCCTAGCTACTTCTATGAACTGGAATATCTT CCTTCGCCAAAGGAGATGGCCGTGAATGGAAAAGGTACAGATCAAGACAAGGCCCACCTG TCCAATGTCTATACCGATGTGATGCACAGCAGATCAAAGAAAGAAGGAATTCCAAGAGCC TCCAGTTTGTCCAGTATTGATTCTATTATGACTCCAAGTCGGATGTCGCTTGGGGATGTT GATACATCAGGTAGTACAGTGGCAAGCACTGAACCATCAGACTATGTACGTGGTCTCGAT CCGAAAGCAAAACGCTTGTCTCTGGGAAGAAGTAACATTGTTTCAGAACCTGAAGAAGTG CTACACCCTCAACCACATCATGGATCATTCTGGCCAAGAACCAGGTCCAAAGCAAGGGCT GATAGAAATTCAGTTGGTATAACGTCTACTAATGACACACGGTCGTCTTGGGCAGCCCCA TCAATGCATGATAAGGAAGACATTTCCTCAACAATATCAGACCCAGGACCTATTTGGGAC TGTGAACCAAAGTGGGACACAGGGCCAAAATGGGATAGTGAGCTAACTTGGGAGCCTGAC CACCCCATTGAACTTCCTGGACCACAAGAGGACATGGGAATTGGAGCACCGATGGAACTT GTGCCAAATTTGGATGAGAAATGGGTAGTTAGGAAAGGGCACTTTCTTGGTGTCCTAGTA TGCAACCATTCATGCATGACAGTGCAAAGTCTGAGTTCACAGGTTGTTGCACCGAAGGCC ATCCATGATGACAACAGCTTGGACTTACTTTTAGTTGGTGGAAAAGGAAGATGGAAATTG CTGAGATTTTTCATACTTCTGCAATTCGGTCGCCATCTCTCTTTGCCTTACGTCGAATAT GTAAAGGTGAAGTCAGTTAAGCTTAAACCTGGTGCAAACACTCACAATGGCTGTGGCATA GATGGCGAGCTTTGCCGTGTCAAGGGACAGGTACTCTGCTCCCTGCTTCCGGAGCAATGC AGACTGATTGGCCGGCGATGTAGACAATCTATTTAA

Peptide Sequence

PEP ID	Zm00001d025963_P005
PEP Infomation	pep chromosome:B73_RefGen_v4:10:134956781:134961766:1 gene:Zm00001d025963 transcript:Zm00001d025963_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sphingoid long-chain bases kinase 1
Sequence	MDGSELENPTSRSSSQKSSRRSSSRRSQKSAGQHSLTGAQEKRSKSKSSRQKHLVIDDKE AKKGKKHDHKIDVADERSNFLGYEVYAGKLILQKKNRSASDNNQLPSNGKADAIDARLTS KALIWGSSVLLLEDVVSVSYNSGVKHFTLHAYSTKKSLFKKTCRVQKDFCFIASTLDEAI LWVTCFAEQSIYVNLLPRLGASSINQDSENPLSESLFDQPPIKCKSPQRVLVILNPRSGH GRSSKVFHEKAEPIFKLAGFQMEVVKTTHAGHAKSLVSTFDFSACPDGIVCVGGDGIVNE VLNGLLIRSDRAEAVSIPVGIIPAGSDNSLVWTVLGVRDPISASLLIVKGGFTALDILAV EWVQSGQIHFGSTVSYYGFVSDVLELSEKYQKKFGPLRYFVAGILKFLCLPSYFYELEYL PSPKEMAVNGKGTDQDKAHLSNVYTDVMHSRSKKEGIPRASSLSSIDSIMTPSRMSLGDV DTSGSTVASTEPSDYVRGLDPKAKRLSLGRSNIVSEPEEVLHPQPHHGSFWPRTRSKARA DRNSVGITSTNDTRSSWAAPSMHDKEDISSTISDPGPIWDCEPKWDTGPKWDSELTWEPD HPIELPGPQEDMGIGAPMELVPNLDEKWVVRKGHFLGVLVCNHSCMTVQSLSSQVVAPKA IHDDNSLDLLLVGGKGRWKLLRFFILLQFGRHLSLPYVEYVKVKSVKLKPGANTHNGCGI DGELCRVKGQVLCSLLPEQCRLIGRRCRQSI

Transcript Sequence

Transcript ID	Zm00001d025963_T005
Transcript Infomation	cdna chromosome:B73_RefGen_v4:10:134956781:134961766:1 gene:Zm00001d025963 gene_biotype:protein_coding transcript_biotype:protein_coding description:Sphingoid long-chain bases kinase 1
Sequence	GGATCCGTGATGCCTCCTCCATTCCTGAAGCTATTTGGAATTCATTGCCTGAATCAGTGT TCTGAAGTGCTATCTAACAGTCAGAAATGGATGGATCCGAGCTTGAAAATCCTACTTCTA GAAGCTCATCCCAGAAATCTAGCCGACGTTCGAGTAGTAGGCGTTCTCAAAAGTCAGCTG GACAGCATTCTTTGACCGGTGCTCAAGAGAAAAGAAGCAAATCGAAATCTTCAAGGCAGA AACACTTGGTTATTGACGACAAAGAGGCTAAAAAAGGGAAAAAACATGACCACAAAATTG ACGTGGCAGATGAGAGGTCCAATTTTCTAGGTTATGAAGTGTATGCTGGAAAGCTGATTC TTCAAAAGAAAAATAGAAGTGCGAGTGATAATAATCAGTTACCGTCAAACGGAAAAGCTG ATGCAATTGATGCTAGACTCACAAGTAAAGCTCTGATCTGGGGCAGCTCTGTACTCCTAC TGGAGGATGTTGTCTCTGTATCATATAATTCTGGAGTCAAACATTTTACATTGCATGCAT ACTCAACTAAAAAGTCTTTATTTAAAAAGACATGCAGAGTTCAGAAAGATTTCTGCTTTA TAGCCTCTACCCTTGACGAGGCCATTTTGTGGGTGACATGCTTTGCTGAACAAAGTATAT ATGTTAACTTACTACCTCGCCTTGGAGCATCTAGTATCAATCAAGACTCAGAAAATCCCC TCAGTGAGTCTTTATTTGACCAGCCACCGATTAAATGCAAATCTCCGCAAAGAGTACTTG TTATATTGAACCCTCGATCTGGACATGGTAGATCAAGTAAAGTTTTCCATGAGAAAGCTG AACCTATATTTAAGCTTGCAGGTTTTCAGATGGAAGTTGTTAAAACTACTCATGCTGGGC ATGCAAAATCTCTTGTATCTACATTTGATTTCAGTGCATGCCCTGATGGAATCGTGTGCG TGGGTGGTGATGGAATTGTGAATGAGGTGCTCAATGGTCTTCTCATTAGGAGTGATAGAG CAGAAGCTGTATCAATTCCAGTTGGAATAATTCCTGCAGGGTCTGACAACTCACTTGTCT GGACTGTTTTGGGAGTTAGAGATCCTATTTCTGCATCATTATTAATTGTTAAGGGTGGTT TCACAGCTCTAGATATCTTGGCTGTCGAGTGGGTTCAATCTGGGCAAATACATTTTGGCT CAACTGTTTCATACTATGGTTTTGTTAGTGATGTCCTGGAACTTTCTGAGAAATATCAGA AGAAATTTGGTCCACTTCGATATTTTGTGGCTGGAATACTGAAATTTTTATGTTTGCCTA GCTACTTCTATGAACTGGAATATCTTCCTTCGCCAAAGGAGATGGCCGTGAATGGAAAAG GTACAGATCAAGACAAGGCCCACCTGTCCAATGTCTATACCGATGTGATGCACAGCAGAT CAAAGAAAGAAGGAATTCCAAGAGCCTCCAGTTTGTCCAGTATTGATTCTATTATGACTC CAAGTCGGATGTCGCTTGGGGATGTTGATACATCAGGTAGTACAGTGGCAAGCACTGAAC CATCAGACTATGTACGTGGTCTCGATCCGAAAGCAAAACGCTTGTCTCTGGGAAGAAGTA ACATTGTTTCAGAACCTGAAGAAGTGCTACACCCTCAACCACATCATGGATCATTCTGGC CAAGAACCAGGTCCAAAGCAAGGGCTGATAGAAATTCAGTTGGTATAACGTCTACTAATG ACACACGGTCGTCTTGGGCAGCCCCATCAATGCATGATAAGGAAGACATTTCCTCAACAA TATCAGACCCAGGACCTATTTGGGACTGTGAACCAAAGTGGGACACAGGGCCAAAATGGG ATAGTGAGCTAACTTGGGAGCCTGACCACCCCATTGAACTTCCTGGACCACAAGAGGACA TGGGAATTGGAGCACCGATGGAACTTGTGCCAAATTTGGATGAGAAATGGGTAGTTAGGA AAGGGCACTTTCTTGGTGTCCTAGTATGCAACCATTCATGCATGACAGTGCAAAGTCTGA GTTCACAGGTTGTTGCACCGAAGGCCATCCATGATGACAACAGCTTGGACTTACTTTTAG TTGGTGGAAAAGGAAGATGGAAATTGCTGAGATTTTTCATACTTCTGCAATTCGGTCGCC ATCTCTCTTTGCCTTACGTCGAATATGTAAAGGTGAAGTCAGTTAAGCTTAAACCTGGTG CAAACACTCACAATGGCTGTGGCATAGATGGCGAGCTTTGCCGTGTCAAGGGACAGGTAC TCTGCTCCCTGCTTCCGGAGCAATGCAGACTGATTGGCCGGCGATGTAGACAATCTATTT AAGCGCTGTGTTGAATTTCATGGATCCTGGGGTTCTTTCCACTTCTAACAAATGTTTATA TAACTATACTTTCTGATGGGATTAAGCTTGGGTTGGTGTTGCAAATGTTGAGAGTTTGAA CCAGAAGCAATGTTGTGAGGTTTCTGTATATTTGAGCGGTTATAGGATGATATGCTGATT CTGTTTAATTATGTTGATTTTGCTTATATATATTCAATAGAGTAATTTAGTC