Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d025816_T011
CDS Infomation

cds chromosome:B73_RefGen_v4:10:130399951:130438467:-1 gene:Zm00001d025816 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA mismatch repair protein

Sequence

ATGCACCGGGTGCTCGTGAGCTCGCTTGTGGCCGCCACGCCGCGATGGCTGCCCCTCGCC
GACTCCATCCTCCGGCGCCGCCGGCCGCGCTGCTCCCCTCTTCCCGTGCTGATGTTCGAT
CGGAGGGCTTGGTCCAAGCCAAGGAAGGTCTCACGAGGCATTTCAGTGGCGTCCAGGAAA
GCTAACAAACAGGGAGAATACTGTGATGAAAGTATGCTGTCGCATATCATGTGGTGGAAA
GAGAAAATGGAGAGGTGCAGAAAACCATCATCCATACAATTGACTCAGAGGCTTGTGTAT
TCAAATATATTAGGGTTGGATCCGAATTTAAGAAACGGAAGCTTGAAAGATGGAACCCTG
AACATGGAGATTTTGGTATTTAAATCAAAATTTCCTCGTGAGGTTCTACTTTGCAGAGTA
GGAGATTTCTATGAAGCTATCGGTTTTGATGCCTGTATTCTCGTAGAGCATGCAGGCTTA
AATCCTTTTGGAGGTTTGCGTTCCGACAGTATTCCTAAAGCTGGGTGTCCAGTCGTGAAT
TTACGGCAGACATTGGATGATTTGACTCGATGTGGTTATTCCGTGTGCATAGTCGAGGAA
ATTCAAGGCCCAACTCAAGCCCGTGCTCGGAAAAGTCGATTTATTTCTGGGCATGCCCAT
CCTGGTAGTCCTTATGTATTTGGTCTTGCTGAAGTAGACCATGATGTAGAGTTCCCTGAT
CCGATGCCTGTTGTTGGGATTTCACATTCTGCAAAAGGTTATTGCTTGATATCTGTGCTA
GAGACAATGAAAACTTATTCAGCTGAGGAGGGCTTAACAGAGGAGGCTATTGTTACTAAG
CTCCGCATATGTCGTTATCACCATCTATACCTTCACAATTCTTTGAAGAATAATTCTTCA
GGGACATCACGCTGGGGTGAATTCGGTGAAGGTGGGCTCTTGTGGGGAGAGTGCAGTGGG
AAGTCCTTTGAGTGGTTTGACGGTTCACCTATTCAAGAACTTTTATGCAAGGTACGGGAA
ATATATGGCCTTGATGAGAAAACGGTTTTTCGCGATGTCACCGTCTCATTGGAAGGCAGG
CCCCAACCTCTTCATCTTGGGACTGCTACTCAAATTGGAGTCATACCAACTGAGGGAATA
CCGAGTTTGTTAAGAATGGTGCTTCCTTCAAATTGTGGCGGGCTTCCATCAATGTATATT
AGAGATCTTCTTCTTAATCCTCCATCATTTGAGGTTGCAGCAGCGATCCAAGAGGCTTGC
AGGCTTATGGGCAACATAACCTGCTCCATTCCTGAATTTACATGCATATCAGCAGCAAAG
CTTGTGAAACTACTTGAGTCGAAAGAGGTCAATCACATTGAATTTTGTAGAATAAAAAAT
GTCCTTGATGAGATTATGCTCATGAACAGGGATGCTGAGCTTTCTGCAATCCTGCATGAA
TTACTGGTACCTGCTTCTGTGGCTACTGGTTTCAAAGTTGAAGCTGATATGCTAATGAAC
GGATGTAGCATTATTTCACAACGAATAGCTGAAGTGATTTCTTTAGGTGTTGAAAGTGAT
CAGGCAATAACTTCATTGGAATATATTCCAAAGGAGTTCTTCAATGATATGGAGTCATCT
TGGAAGGGGCGCGTGAAAAGGATCCATGCTGAAGAAGAGTTTGCAAATGTTGATAGGGCT
GCTGAGGCATTATCAATTGCGGTCATTGAAGATTTTATGCCAATTATTTCGAGGGTGAAA
TCTGTAGTGTCCTCGAATGGAGGTTTGAAAGGAGAAATCGGTTATGCAAAAGAACATGAA
GCTGTTTGGTTTAAAGGAAAGAGATTCATACCAAATGTATGGGCTAACACACCTGGTGAG
CAGCAAATAAAACAACTGAAGCCTGCAATTGATTCAAAAGGCAGAAAGGTTGGGGAGGAA
TGGTTTACAACAAGCAAAGTTGAGAATGCTTTAGCCAGGTACCATGAAGCTTGTGATAAT
GCAAGAAATAAAGTTCTTGAGCTGTTGAGAGGCCTTTCTAGTGAATTGCAGGACAAAATT
AACATACTTGTCTTTTGCTCAACACTGCTCATCATTGCAAAAGCACTTTTTGGTCATAAT
CTATGTTTTTGCTATTCTTCCAAGGTTCACTTTTTTGGTATTCAAGCAGTTCAACCAACA
AGCTTTTGGCGGCTTACTAGTAGGAAATTATTTGAGTTGGTTTGCCGGAAATTTGTACTT
GAGATATAA

Peptide Sequence

PEP ID

Zm00001d025816_P011
PEP Infomation

pep chromosome:B73_RefGen_v4:10:130399951:130438467:-1 gene:Zm00001d025816 transcript:Zm00001d025816_T011 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA mismatch repair protein

Sequence

MHRVLVSSLVAATPRWLPLADSILRRRRPRCSPLPVLMFDRRAWSKPRKVSRGISVASRK
ANKQGEYCDESMLSHIMWWKEKMERCRKPSSIQLTQRLVYSNILGLDPNLRNGSLKDGTL
NMEILVFKSKFPREVLLCRVGDFYEAIGFDACILVEHAGLNPFGGLRSDSIPKAGCPVVN
LRQTLDDLTRCGYSVCIVEEIQGPTQARARKSRFISGHAHPGSPYVFGLAEVDHDVEFPD
PMPVVGISHSAKGYCLISVLETMKTYSAEEGLTEEAIVTKLRICRYHHLYLHNSLKNNSS
GTSRWGEFGEGGLLWGECSGKSFEWFDGSPIQELLCKVREIYGLDEKTVFRDVTVSLEGR
PQPLHLGTATQIGVIPTEGIPSLLRMVLPSNCGGLPSMYIRDLLLNPPSFEVAAAIQEAC
RLMGNITCSIPEFTCISAAKLVKLLESKEVNHIEFCRIKNVLDEIMLMNRDAELSAILHE
LLVPASVATGFKVEADMLMNGCSIISQRIAEVISLGVESDQAITSLEYIPKEFFNDMESS
WKGRVKRIHAEEEFANVDRAAEALSIAVIEDFMPIISRVKSVVSSNGGLKGEIGYAKEHE
AVWFKGKRFIPNVWANTPGEQQIKQLKPAIDSKGRKVGEEWFTTSKVENALARYHEACDN
ARNKVLELLRGLSSELQDKINILVFCSTLLIIAKALFGHNLCFCYSSKVHFFGIQAVQPT
SFWRLTSRKLFELVCRKFVLEI

Transcript Sequence

Transcript ID

Zm00001d025816_T011
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:130399951:130438467:-1 gene:Zm00001d025816 gene_biotype:protein_coding transcript_biotype:protein_coding description:DNA mismatch repair protein

Sequence

ACCCCGAGAAACGTGCGACGGGAACCTCCGCGGTTCCCCAAGTTCGCCTCCTTCACTACT
CTCGCGCCCCGGCACGCCTGAAAAACCCCACCCCTCCTGCCGCTCCGCCTCTCCCATCAC
TTCCCACGCCCCTCGCCGCCTCCCATTCCAGCGTGGACACGACGCCACTCGCCAGCACGG
AGACGCGCGCCTCGAAGCACTACTGCACTAGCCAGCCGTCGTTCTTCCGCGCCGGCGCCA
TGCACCGGGTGCTCGTGAGCTCGCTTGTGGCCGCCACGCCGCGATGGCTGCCCCTCGCCG
ACTCCATCCTCCGGCGCCGCCGGCCGCGCTGCTCCCCTCTTCCCGTGCTGATGTTCGATC
GGAGGGCTTGGTCCAAGCCAAGGAAGGTCTCACGAGGCATTTCAGTGGCGTCCAGGAAAG
CTAACAAACAGGGAGAATACTGTGATGAAAGTATGCTGTCGCATATCATGTGGTGGAAAG
AGAAAATGGAGAGGTGCAGAAAACCATCATCCATACAATTGACTCAGAGGCTTGTGTATT
CAAATATATTAGGGTTGGATCCGAATTTAAGAAACGGAAGCTTGAAAGATGGAACCCTGA
ACATGGAGATTTTGGTATTTAAATCAAAATTTCCTCGTGAGGTTCTACTTTGCAGAGTAG
GAGATTTCTATGAAGCTATCGGTTTTGATGCCTGTATTCTCGTAGAGCATGCAGGCTTAA
ATCCTTTTGGAGGTTTGCGTTCCGACAGTATTCCTAAAGCTGGGTGTCCAGTCGTGAATT
TACGGCAGACATTGGATGATTTGACTCGATGTGGTTATTCCGTGTGCATAGTCGAGGAAA
TTCAAGGCCCAACTCAAGCCCGTGCTCGGAAAAGTCGATTTATTTCTGGGCATGCCCATC
CTGGTAGTCCTTATGTATTTGGTCTTGCTGAAGTAGACCATGATGTAGAGTTCCCTGATC
CGATGCCTGTTGTTGGGATTTCACATTCTGCAAAAGGTTATTGCTTGATATCTGTGCTAG
AGACAATGAAAACTTATTCAGCTGAGGAGGGCTTAACAGAGGAGGCTATTGTTACTAAGC
TCCGCATATGTCGTTATCACCATCTATACCTTCACAATTCTTTGAAGAATAATTCTTCAG
GGACATCACGCTGGGGTGAATTCGGTGAAGGTGGGCTCTTGTGGGGAGAGTGCAGTGGGA
AGTCCTTTGAGTGGTTTGACGGTTCACCTATTCAAGAACTTTTATGCAAGGTACGGGAAA
TATATGGCCTTGATGAGAAAACGGTTTTTCGCGATGTCACCGTCTCATTGGAAGGCAGGC
CCCAACCTCTTCATCTTGGGACTGCTACTCAAATTGGAGTCATACCAACTGAGGGAATAC
CGAGTTTGTTAAGAATGGTGCTTCCTTCAAATTGTGGCGGGCTTCCATCAATGTATATTA
GAGATCTTCTTCTTAATCCTCCATCATTTGAGGTTGCAGCAGCGATCCAAGAGGCTTGCA
GGCTTATGGGCAACATAACCTGCTCCATTCCTGAATTTACATGCATATCAGCAGCAAAGC
TTGTGAAACTACTTGAGTCGAAAGAGGTCAATCACATTGAATTTTGTAGAATAAAAAATG
TCCTTGATGAGATTATGCTCATGAACAGGGATGCTGAGCTTTCTGCAATCCTGCATGAAT
TACTGGTACCTGCTTCTGTGGCTACTGGTTTCAAAGTTGAAGCTGATATGCTAATGAACG
GATGTAGCATTATTTCACAACGAATAGCTGAAGTGATTTCTTTAGGTGTTGAAAGTGATC
AGGCAATAACTTCATTGGAATATATTCCAAAGGAGTTCTTCAATGATATGGAGTCATCTT
GGAAGGGGCGCGTGAAAAGGATCCATGCTGAAGAAGAGTTTGCAAATGTTGATAGGGCTG
CTGAGGCATTATCAATTGCGGTCATTGAAGATTTTATGCCAATTATTTCGAGGGTGAAAT
CTGTAGTGTCCTCGAATGGAGGTTTGAAAGGAGAAATCGGTTATGCAAAAGAACATGAAG
CTGTTTGGTTTAAAGGAAAGAGATTCATACCAAATGTATGGGCTAACACACCTGGTGAGC
AGCAAATAAAACAACTGAAGCCTGCAATTGATTCAAAAGGCAGAAAGGTTGGGGAGGAAT
GGTTTACAACAAGCAAAGTTGAGAATGCTTTAGCCAGGTACCATGAAGCTTGTGATAATG
CAAGAAATAAAGTTCTTGAGCTGTTGAGAGGCCTTTCTAGTGAATTGCAGGACAAAATTA
ACATACTTGTCTTTTGCTCAACACTGCTCATCATTGCAAAAGCACTTTTTGGTCATAATC
TATGTTTTTGCTATTCTTCCAAGGTTCACTTTTTTGGTATTCAAGCAGTTCAACCAACAA
GCTTTTGGCGGCTTACTAGTAGGAAATTATTTGAGTTGGTTTGCCGGAAATTTGTACTTG
AGATATAAATCTGACCCAAAGATCATCAAATTAAACACTTTCATTTCATAATGATTAAAG
GACTGGTGGTTTTGCATAAAAGCATGGTTTGGTATCAGTAGTGAGCCATCTGCCTAGTTG
GTAACCAAAACTAGCTTCCTTGTGAAACTTGTTCAGTTTCTTGTTATGGTACAATGTGCA
ATGTGAAACTTGACATTGGGTATAGCTATGTCTTATTTAGTTTAGATATTTGCAAGCGGC
TCAGAGCCTATTGGAAAAAATACATTGTGTTTGGTATTTGGTAAGGCATAAAGTTTTTTT
AGTTCTGCAACTGATTATATTGTTGCCTGCCAATCGGTCATGCACACTGGTCTTATTCAT
GCTTTTGTTGTTTTCTTTCTTACCTTGAACAGTGAGGCTCGAAGAAGAGGTTGGATGCTT
CCTACTATATCTCCCTTATCAAAGGACTGTGTTGTGGAGGAAAGTTCAAGTGCAATGGAT
TTAGTAGGACTATTTCCTTACTGGCTTGATGTTAATCAAGGAAATGCAATATTGAATGAT
GTCCACATGCACTCTTTATTTGTTCTTACTGGCCCAAATGGTGGTGGTAAATCTAGCATG
TTGCGATCAGTCTGTGCAGCTGTGCTTCTTGGAATATGTGGCCTGATGGTACCTTCAACT
TCAGCTGTAATCCCACATTTTGATTCCATTATGCTGCATATGAAAGCCTATGATAGCCCA
GCAGATGGGAAAAGTTCATTTCAGATTGAAATGTCGGAGATACGTGCTTTAGTCAGCCGA
GCTACTGCTAGGAGTCTTGTTCTGATTGATGAAATATGTAGAGGCACAGAAACTGCAAAA
GGAACATGTATAGCTGGTAGCATCATTGAAAGACTTGATAATGTTGGCTGCCTAGGCATC
ATATCAACTCACCTGCATGGGATTTTCGACCTGCCTCTCTCACTTAGCAACACTGATTTC
AAAGCTATGGGAACTGAAGTGGTCGATGGATGCATTCATCCAACATGGAAACTGATTGAT
GGCATATGTAGAGAAAGCCTTGCTTTTCAAACAGCAAGGAGGGAAGGCATGCCTGACTTG
ATAATCACCAGGGCTGAGGAGCTATATTTGAGTATGAGTACAAATAACAAGCAGGGAGCA
TCAGTGGCGCACAATGAGCCTCCTAATGGCAGCCCCAGTGTAAATGGCTTGGTTGAGGAG
CCTGAATCTCTGAAGAACAGACTAGAAATGCTGCCTGGTACCTTTGAGCCGCTGCGGAAG
GAAGTTGAGAGTGCTGTTACTACGATGTGTAAGAAAATACTGTCGGACCTTTACAACAAA
AGTAGCATCCCAGAACTGGTCGAGGTGGTCTGCGTTGCTGTAGGTGCTAGAGAGCAACCA
CCGCCTTCCACTGTTGGCAGATCTAGCATCTACGTGATTATCAGAAGCGACAACAGGCTC
TATGTTGGACAGACGGACGATCTTCTGGGGCGCTTGAACGCCCACAGATCGAAGGAAGGC
ATGCGGGACGCTACGGTATTATACGTCTTGGTCCCTGGCAAGAGCGTTGCCTGCCAGCTG
GAAACCCTTCTCATAAACCAGCTCCCTTCGAGGGGCTTCAAGCTCATCAACAAGGCAGAC
GGGAAGCACAGGAACTTCGGTATATCTCGAATCTCTGGCGAGGCAGTTGCTACTGGACGG
AACTAGTCAGCTGAAGGTCTTTTTGCTATTGGATATTCAATAGGAGGCGGGAGCTAACTG
ACACCATGCCGCCCTAGTTTTGTTGAACTGATAGTGGTGCTAGCCTTGTGCATAGTAGGG
GCCAGGGGAGTAATAATATTTCCCTTGTCTAAGGAAGTAATTAAGGATGTAGGAGCGCAG
AGCAAATGATTAGCAAAACGATCACGTTCGCAGTGCGGCAGGCATTGTGCAGCTGATTCG
TTTGTTCAATCAGTGCTCTCGCTCAGTGACCTGACAGCGTGATCACTAAACCTAGTAGCT
GGGCGCGCCTTTCTAGGCCAGAACAGAACATTGGCGTGAATTAGATTCCAGTGCGGCAGG
GTGTTCCCTAAGTACATGTTTTCAG