Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d025734_T017
CDS Infomation

cds chromosome:B73_RefGen_v4:10:127911330:127929810:1 gene:Zm00001d025734 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGCAAGAAGCTGCTTTCCTCCATCCATTTGCGGAAGCATGTTATACGGGACCACTTCTT
GATTTTGGACGAAATCCTATCCTGTTTCCCTGTGCATGGGTTTATAGACAAGGTGTGTTA
ACTCCATGGGCACGCAGAAGACGCCCTGCACTTGATGGTGATAATTGGTGGCGAGGCCAT
GCTGCAGCTTTCCTTAGATTTGTTAATATACCACCTAAAGCACTTCTGAAAGGACGTGTT
TGCCAGAGCAAGCGTGAAGCTGCTTATTTTGTTGTGGTTCTCCATGACAAAAGAACTGTT
GTCATTGGGGTTCGTGGAACAGAGACACCAGAGGATCTCATAACTGATGGATTATGCAGA
GAATGTGCTTTTACTATGGAAGATTTGGATGGACTAGTAAATAGTGAACAATTACCTGCA
ACTACAAGAGAGAGAGTTATTTCAACATTTCCACACTATGGTCATGGTGGAATTGTAGAG
TCTGCCAGGGAGCTTTTCATGCAACTAAATGGAGAAAACACATCTTCTGGAAGACTTGGG
TTCCTTTCCACACTGCTGGGGGAGGGCAGTGAGTGTCATGGATATAAAGTTCGTCTTGTT
GGGCATTCTTTAGGAGGCGCTGTTGCTACAGTCCTAGGAATGATGCTATATGGCAAATAC
CCAAGCGTGCATGTATATGCATATGGACCACTTCCTTGTGTGGACTTTGTAATAGCGGAA
GCATGTTCGCATTTTGTCACAACCATTATTTGCAATGATGAATTTTCCTCTCGCCTTTCA
ATCAATTCGATTCTTAGGCTACGATCTGCTGCAATAAGTGCTCTTTCAGATAACTCTCCA
GCTGATACAGCAATGATACAAAAGCTCGCTCGAAGAATTTTGCATGTGAACAGGTATCAT
GATAATGGTCCTGACGATGGCATAATCCAGGGCTATGCTGATCATACAAGAACAGCAGAT
ACAACAGTACCGAATGAAAGACAAATTTCTCATCAGATTCCATTATGCAATACTGAACTA
GACCTCCACAATACGCAAAATGGCTTTTTTAGGTATAATGGGTCCAGTGCATCAATAGAT
GAGCATCTGAGCTATGAAGGCATAAGCAGTGGCCATGATATGCAAATAATTCCACTTGAT
GGGGCTGATTCTGGTTTTGAAGGGCACCAGACATCTTACAGAGAAATACCAGTGGAGCCT
CCTGAGATGTTTCTTGCAGGCTTAATTGTTCACATAGTGCGGCAAAGAAGAAGTCTCTTT
CCTCTTTGGAAATGCTGGAGCATCCAGGAAACTGAACCACCATACAAAGCTGTTTTAGCG
AAAAGGGAGAACTTCAGGGATATAGTGGTTACTCCTTACATGTTTACAGATCACTTACCA
TGGAGATGTTCGTGCTTCTACTATACCTGCCTCACGATTAGAACAGTCCTTGATGGAGTC
CTTATCTTCTTCAATTGTGCCTTCTTCAGTGGTACCTCCCTTCCCTTGGTGTCTTCTTTA
GAGTCTCCTTCCTTGGTTTCTGACTAG

Peptide Sequence

PEP ID

Zm00001d025734_P017
PEP Infomation

pep chromosome:B73_RefGen_v4:10:127911330:127929810:1 gene:Zm00001d025734 transcript:Zm00001d025734_T017 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MQEAAFLHPFAEACYTGPLLDFGRNPILFPCAWVYRQGVLTPWARRRRPALDGDNWWRGH
AAAFLRFVNIPPKALLKGRVCQSKREAAYFVVVLHDKRTVVIGVRGTETPEDLITDGLCR
ECAFTMEDLDGLVNSEQLPATTRERVISTFPHYGHGGIVESARELFMQLNGENTSSGRLG
FLSTLLGEGSECHGYKVRLVGHSLGGAVATVLGMMLYGKYPSVHVYAYGPLPCVDFVIAE
ACSHFVTTIICNDEFSSRLSINSILRLRSAAISALSDNSPADTAMIQKLARRILHVNRYH
DNGPDDGIIQGYADHTRTADTTVPNERQISHQIPLCNTELDLHNTQNGFFRYNGSSASID
EHLSYEGISSGHDMQIIPLDGADSGFEGHQTSYREIPVEPPEMFLAGLIVHIVRQRRSLF
PLWKCWSIQETEPPYKAVLAKRENFRDIVVTPYMFTDHLPWRCSCFYYTCLTIRTVLDGV
LIFFNCAFFSGTSLPLVSSLESPSLVSD

Transcript Sequence

Transcript ID

Zm00001d025734_T017
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:127911330:127929810:1 gene:Zm00001d025734 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

TTGTACATGTTGTAGGGCTTGCTCTATTGCAGAAGCACGGGAATTTATCTGAATTGCAGA
CTGACCTTGTGGAGGCATCCCATGAGCTTATGCAAGAAGCTGCTTTCCTCCATCCATTTG
CGGAAGCATGTTATACGGGACCACTTCTTGATTTTGGACGAAATCCTATCCTGTTTCCCT
GTGCATGGGTTTATAGACAAGGTGTGTTAACTCCATGGGCACGCAGAAGACGCCCTGCAC
TTGATGGTGATAATTGGTGGCGAGGCCATGCTGCAGCTTTCCTTAGATTTGTTAATATAC
CACCTAAAGCACTTCTGAAAGGACGTGTTTGCCAGAGCAAGCGTGAAGCTGCTTATTTTG
TTGTGGTTCTCCATGACAAAAGAACTGTTGTCATTGGGGTTCGTGGAACAGAGACACCAG
AGGATCTCATAACTGATGGATTATGCAGAGAATGTGCTTTTACTATGGAAGATTTGGATG
GACTAGTAAATAGTGAACAATTACCTGCAACTACAAGAGAGAGAGTTATTTCAACATTTC
CACACTATGGTCATGGTGGAATTGTAGAGTCTGCCAGGGAGCTTTTCATGCAACTAAATG
GAGAAAACACATCTTCTGGAAGACTTGGGTTCCTTTCCACACTGCTGGGGGAGGGCAGTG
AGTGTCATGGATATAAAGTTCGTCTTGTTGGGCATTCTTTAGGAGGCGCTGTTGCTACAG
TCCTAGGAATGATGCTATATGGCAAATACCCAAGCGTGCATGTATATGCATATGGACCAC
TTCCTTGTGTGGACTTTGTAATAGCGGAAGCATGTTCGCATTTTGTCACAACCATTATTT
GCAATGATGAATTTTCCTCTCGCCTTTCAATCAATTCGATTCTTAGGCTACGATCTGCTG
CAATAAGTGCTCTTTCAGATAACTCTCCAGCTGATACAGCAATGATACAAAAGCTCGCTC
GAAGAATTTTGCATGTGAACAGGTATCATGATAATGGTCCTGACGATGGCATAATCCAGG
GCTATGCTGATCATACAAGAACAGCAGATACAACAGTACCGAATGAAAGACAAATTTCTC
ATCAGATTCCATTATGCAATACTGAACTAGACCTCCACAATACGCAAAATGGCTTTTTTA
GGTATAATGGGTCCAGTGCATCAATAGATGAGCATCTGAGCTATGAAGGCATAAGCAGTG
GCCATGATATGCAAATAATTCCACTTGATGGGGCTGATTCTGGTTTTGAAGGGCACCAGA
CATCTTACAGAGAAATACCAGTGGAGCCTCCTGAGATGTTTCTTGCAGGCTTAATTGTTC
ACATAGTGCGGCAAAGAAGAAGTCTCTTTCCTCTTTGGAAATGCTGGAGCATCCAGGAAA
CTGAACCACCATACAAAGCTGTTTTAGCGAAAAGGGAGAACTTCAGGGATATAGTGGTTA
CTCCTTACATGTTTACAGATCACTTACCATGGAGATGTTCGTGCTTCTACTATACCTGCC
TCACGATTAGAACAGTCCTTGATGGAGTCCTTATCTTCTTCAATTGTGCCTTCTTCAGTG
GTACCTCCCTTCCCTTGGTGTCTTCTTTAGAGTCTCCTTCCTTGGTTTCTGACTAGACTA
GGAAGCCTCCGGTGACACATGTCTACTCTCAACGGGTCGTAAATTCTTCTGGTATGCCGT
CTTCCTCTGCTGAGCTACCCTCTTTTGTTGTGCCATCTTCTACTATTGAGTCATCTTTCT
CTAATGATTCACCTTCATTTGATGAGAATATGCTGAGCCAACTTCTTCTGGTAGTTCTTC
ACTGCGACAGTTTCTCGCTTTTATCAATCACTTGACCGGTACCATCCTTTGGGTTTTGCT
GCTACCTTTCTTTATGAGCCGAGCTCTTATTGTGATGTTATCCTTCATCAGGAATGGCAG
CATGCAATGGACGAGGAGATTGTTGCTCTTGAGTGTATCGATATGTGGGAACTTGTTACT
AAGCATATAGGTGTTTTGCCTATTACACGCGTGCACAGGTTTAGGATGATCTGATTGATC
TTCGTTATGTGCTTTCAAAGCTTAAGTTGGCTGATTTCTTCACGAAGGAGCAGAACAGAG
CTCAACATAGGTTTTGTCTCTTCAAACTCAGTGTGTTTGATCCAACTTGAGTTCGAGGGG
GCGTTAGATATCTATGTGCGTCCTTGTTGTATTCGGTTTCATATATATATAATCCTTGTT
AGATGTATATGCATGTGTTCTTGTTGTATTTGGTCTCATATATAGAGTCCTTATTCCACA
CGGTCTCTATTCTATATCGGTGTATATATTCGGGTCTAGTACCCTCATATTGAGTATAGT
GCAATTTATAACAATTTGAACTCCATGCACCATGCTTAAATATGCAACATAAGATAAAAC
GTCCATACAATTAAAGATGCAGTAAAATATATTGTGCAGAACCAATGTCCTACTTTATAA
TCCTACTAATGATGCAGTAAGATATATTTTGGATTATGGAGTAGCTCACTAGATATTCGA
GAGCTGCACCTTGAGTCACTAATCACATAGCCTTGTGCCTGGGTGTGTTTCGTTGGCCTT
GGTCGTGTAGTCCTTGTTCGCGGTAATTCTTGTACTGTGGGTGTGTGGTGTGTCCGCGAG
CCTCTCCTCTGTAGCAGGAGTGGACTCTTGACCAACACATGTGGTTTGAGGTGAATACAA
GCGCATCCAAAGAAGTCCTCAGGTGGGAAAATGTGCTGCATGCTTCTCGCCGTATTGCTG
TTCCTATAATCCAGTAGTCTGTCACAAATCCAACATTTTGCTGTTTTGCAGTTTTGTCTT
GTTTAATTTAATGCAAGTATAACATCAGTTCATCCAGTGCCGTGGTTACAGCATTTAACA
TGTCAATATACTGCACTTCCGTTTGTAATATGCCATTTTTCTTCACTTGAACAGCTAACT
ACTATTTGCTTATAGTCTTCTACATAACATGCCCTTAGCTGAATGTAAAAGCAGCAAATT
CAGTAGCCAGGCATTTTTTTAAAAAAAAAAACTGGCTTCATCACCTATGCATTTGCGATT
TCAGGTGCCACTTTGCTATGCAGAAGATTGTTGAAGCTCAAACGCCTATGAGACGTGCGC
ATTCCGATCCACCCGTACAACAACATTTGGTCTGACCAGGACAAAACTGCTGCCCATGTA
CAGAATTGCGTGAAGGACAGAAAATTATGATGATCACATTTAGCAGCATGGTTTATTGCA
GGCTGGACCGCTGGAGGCATATTTCAGTCCTTCAGGCAGCCAGAATATGTCCGTGACAGA
CCCAAAATCGTGACGAGCTTATTGACAGTCAGAGGCCACCGAGACATGATCACTGGTTAC
TGTACACCAAACAGTATCTAATCAGTCTACTCACCCTGGCAACCTGCGCGTCAATTAATT
AATTCATCGATTGTTCTCTTCAATTAAGTAATTCATCGATTGAATCATTGTTGTGCAGCC
GCGTCGATTCCCCATTTTTTTAATTGGTGCCTAGTTATGGTGTACATAATTCAGCAAAGC
AGGATTAGCTATAGACTGACTGGCTGGCAATGGCAAGTGACGGTCAAGATGTGATTGTAT
TGCTTACCAAGCTGGATACTCTGAATGGAAAGCTGTGAG