Plant GARDEN
How To ▶︎

JA

EN

TOP > About the Species(Zea mays ) > genome data >Gene sequences

Search

By Species By Keywords Genes By Markers By Traits

Let’s Analyze!!

SNP Detection
(lang=JA only) Sequences Other Tools

Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d025695_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:10:126530158:126532242:-1 gene:Zm00001d025695 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence

ATGGCCACCGCCGTCCCCACGGCGGCTCTCCCCACACCGGGCCGCGCCGGGCCGGCGCCG
CCACGTGCTCCACTCCGCGCAGATCCTAGCTACTTGCCACAGCTCCACGCGGCACTAATC
AAGTCCGGAGAGCTCACCGGGTCGGCCAAATCCTTCCACTCCCTCCTCGAGGCGGCCGCG
GCCTCTCCGACGCTGCTCCCCTACGCGGTCAGCCTGTTCCGCTTGGGCCCGCGGCCGCCC
CTTTCGACGCCGTGCTACAACGTCCTTATGCGAGCTTTCCTTCACGCGGGCCACCCGGAG
GACGCCCTGCACCTGTTCATCGAAATGCTCCACGCGGCTTCGGCCTGCCCCGCTGATCAG
CACACCGCCGCCTGTGCCCTCAAGTCGTGCTCCAGGATGTGCGCCCTGGACGTAGGGCGC
GGCGTCCAGGCGTACGCCGTCAAGCGTGGGCTCGTGGCCGATCGGTTCGTTCTGAGCAGC
TTGATTCATATGTACGCGAGCTGTGGCGACGTTGCGGCGGCACGGCTTGTGTTCGACGCG
GCGGAGGAGAGTGGCGTGGTGATGTGGAACGCGATCGTCGCGGCGTACTTGAAGAACGGA
GATTGGATGGAGGTGGTGGAGATGTTTAAGGGCATGCTTGAGGTTGGTGTGGCCTTTGAT
GAGGTCACATTGGTGAGTGTGGTCACGGCATGCGGAAGGATAGGTGACGCGAAGCTTGGC
AAGTGGGTTGCTGGACATGTGGACGAGGAGGGGCTGGCGAGGAACCCGAAATTGGTGACC
GCACTGATGGACATGTATGCCAAGTGCGGAGAGATTGGTAAGGCACGGAGGCTGTTCGAT
GGGATGCAGTCCAGGGATGTGGTTGCTTGGAGCGCAATGATCTCAGGCTACACGCAGGCA
GATCAATGCCGAGAGGCGCTCGGTCTTTTCAGTGAGATGCAGCTTGCAAGAGTTGAGCCG
AACGATGTGACCATGGTAAGCGTGCTCTCTGCCTGTGCTGTCCTGGGTGCACTTGAGACA
GGGAAGTGGGTGCATTCCTACGTAAGAAGGAAGCGCCTATCTCTGACAACTATTCTCGGC
ACTGCACTGGTGGACTTCTACGCGAAGTGTGGATGCATTGACGATGCGGTTGAAGCGTTT
GAGTCAATGCCTGTGAAGAACTCGTGGACGTGGACAGCCTTGATAAAGGGCATGGCAACC
AATGGGAGGGGCAGGGAAGCGTTGGAACTCTTCTCGTCAATGCGCGAGGCCGGGATCGAG
CCCACAGACGTGACATTCATTGGTGTCCTCATGGCTTGCAGCCACAGCTGCCTGGTTGAA
GAGGGCCGCCGGCATTTTGATAGCATGGCTCGGGACTATGGCATTAAGCCAAGGGTTGAG
CACTATGGATGTATGGTGGATCTGTTGGGGCGGGCCGGTTTGGTAGATGAGGCGTACCAG
TTTATCAGGACCATGCCCATCGAGCCAAACGCTGTTATCTGGAGGGCGCTACTGTCTTCC
TGCGCAGTTCACAGAAATGTTGGGATCGGGGAAGAAGCACTGAAGCAGATCATCTCCTTG
AACCCCAGTCACAGTGGTGATTACGTGCTCCTGTCAAACATATATGCATCGGCGGGACAG
TGGAAGGACGCAGCGATGGTTCGAAAGGAAATGAAGGATAGAGGGATCGAGAAAACTCCA
GGCTGCAGCCTCATTGAGCTGGACGGGGTTGTCTTCGAGTTCTTTGCCGAAGACAGCGAC
CACCCCGAGTTGAGGGAGATATACCAGAAAGTCGAGGAGATGATTGGCAGGATCAAGGTG
GCTGGGTATGTCCCAAACACAGCTGATGTGAGGCTAGAGGTTGAAGAGCGTGAGAAGGAA
GTATCCGTTTCCCATCACAGCGAGAAGCTGGCCATTGCGTTTGGCCTCATGAAGCTGGAC
CCTGGTGCAACAATTCGCTTGTCGAAGAATCTAAGGGTCTGCGCAGACTGCCACTCGGCC
ACAAAGTTGATTTCGAAGGTGTACGATAGGGAGATTGTTGTTCGAGACCGGAATATATTT
CATCATTTTAAGGATGGTACTTGCTCCTGCAATGATTACTGGTGA

Peptide Sequence

PEP ID

Zm00001d025695_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:10:126530158:126532242:-1 gene:Zm00001d025695 transcript:Zm00001d025695_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence

MATAVPTAALPTPGRAGPAPPRAPLRADPSYLPQLHAALIKSGELTGSAKSFHSLLEAAA
ASPTLLPYAVSLFRLGPRPPLSTPCYNVLMRAFLHAGHPEDALHLFIEMLHAASACPADQ
HTAACALKSCSRMCALDVGRGVQAYAVKRGLVADRFVLSSLIHMYASCGDVAAARLVFDA
AEESGVVMWNAIVAAYLKNGDWMEVVEMFKGMLEVGVAFDEVTLVSVVTACGRIGDAKLG
KWVAGHVDEEGLARNPKLVTALMDMYAKCGEIGKARRLFDGMQSRDVVAWSAMISGYTQA
DQCREALGLFSEMQLARVEPNDVTMVSVLSACAVLGALETGKWVHSYVRRKRLSLTTILG
TALVDFYAKCGCIDDAVEAFESMPVKNSWTWTALIKGMATNGRGREALELFSSMREAGIE
PTDVTFIGVLMACSHSCLVEEGRRHFDSMARDYGIKPRVEHYGCMVDLLGRAGLVDEAYQ
FIRTMPIEPNAVIWRALLSSCAVHRNVGIGEEALKQIISLNPSHSGDYVLLSNIYASAGQ
WKDAAMVRKEMKDRGIEKTPGCSLIELDGVVFEFFAEDSDHPELREIYQKVEEMIGRIKV
AGYVPNTADVRLEVEEREKEVSVSHHSEKLAIAFGLMKLDPGATIRLSKNLRVCADCHSA
TKLISKVYDREIVVRDRNIFHHFKDGTCSCNDYW

Transcript Sequence

Transcript ID

Zm00001d025695_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:126530158:126532242:-1 gene:Zm00001d025695 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein chloroplastic
Sequence

ATGGCCACCGCCGTCCCCACGGCGGCTCTCCCCACACCGGGCCGCGCCGGGCCGGCGCCG
CCACGTGCTCCACTCCGCGCAGATCCTAGCTACTTGCCACAGCTCCACGCGGCACTAATC
AAGTCCGGAGAGCTCACCGGGTCGGCCAAATCCTTCCACTCCCTCCTCGAGGCGGCCGCG
GCCTCTCCGACGCTGCTCCCCTACGCGGTCAGCCTGTTCCGCTTGGGCCCGCGGCCGCCC
CTTTCGACGCCGTGCTACAACGTCCTTATGCGAGCTTTCCTTCACGCGGGCCACCCGGAG
GACGCCCTGCACCTGTTCATCGAAATGCTCCACGCGGCTTCGGCCTGCCCCGCTGATCAG
CACACCGCCGCCTGTGCCCTCAAGTCGTGCTCCAGGATGTGCGCCCTGGACGTAGGGCGC
GGCGTCCAGGCGTACGCCGTCAAGCGTGGGCTCGTGGCCGATCGGTTCGTTCTGAGCAGC
TTGATTCATATGTACGCGAGCTGTGGCGACGTTGCGGCGGCACGGCTTGTGTTCGACGCG
GCGGAGGAGAGTGGCGTGGTGATGTGGAACGCGATCGTCGCGGCGTACTTGAAGAACGGA
GATTGGATGGAGGTGGTGGAGATGTTTAAGGGCATGCTTGAGGTTGGTGTGGCCTTTGAT
GAGGTCACATTGGTGAGTGTGGTCACGGCATGCGGAAGGATAGGTGACGCGAAGCTTGGC
AAGTGGGTTGCTGGACATGTGGACGAGGAGGGGCTGGCGAGGAACCCGAAATTGGTGACC
GCACTGATGGACATGTATGCCAAGTGCGGAGAGATTGGTAAGGCACGGAGGCTGTTCGAT
GGGATGCAGTCCAGGGATGTGGTTGCTTGGAGCGCAATGATCTCAGGCTACACGCAGGCA
GATCAATGCCGAGAGGCGCTCGGTCTTTTCAGTGAGATGCAGCTTGCAAGAGTTGAGCCG
AACGATGTGACCATGGTAAGCGTGCTCTCTGCCTGTGCTGTCCTGGGTGCACTTGAGACA
GGGAAGTGGGTGCATTCCTACGTAAGAAGGAAGCGCCTATCTCTGACAACTATTCTCGGC
ACTGCACTGGTGGACTTCTACGCGAAGTGTGGATGCATTGACGATGCGGTTGAAGCGTTT
GAGTCAATGCCTGTGAAGAACTCGTGGACGTGGACAGCCTTGATAAAGGGCATGGCAACC
AATGGGAGGGGCAGGGAAGCGTTGGAACTCTTCTCGTCAATGCGCGAGGCCGGGATCGAG
CCCACAGACGTGACATTCATTGGTGTCCTCATGGCTTGCAGCCACAGCTGCCTGGTTGAA
GAGGGCCGCCGGCATTTTGATAGCATGGCTCGGGACTATGGCATTAAGCCAAGGGTTGAG
CACTATGGATGTATGGTGGATCTGTTGGGGCGGGCCGGTTTGGTAGATGAGGCGTACCAG
TTTATCAGGACCATGCCCATCGAGCCAAACGCTGTTATCTGGAGGGCGCTACTGTCTTCC
TGCGCAGTTCACAGAAATGTTGGGATCGGGGAAGAAGCACTGAAGCAGATCATCTCCTTG
AACCCCAGTCACAGTGGTGATTACGTGCTCCTGTCAAACATATATGCATCGGCGGGACAG
TGGAAGGACGCAGCGATGGTTCGAAAGGAAATGAAGGATAGAGGGATCGAGAAAACTCCA
GGCTGCAGCCTCATTGAGCTGGACGGGGTTGTCTTCGAGTTCTTTGCCGAAGACAGCGAC
CACCCCGAGTTGAGGGAGATATACCAGAAAGTCGAGGAGATGATTGGCAGGATCAAGGTG
GCTGGGTATGTCCCAAACACAGCTGATGTGAGGCTAGAGGTTGAAGAGCGTGAGAAGGAA
GTATCCGTTTCCCATCACAGCGAGAAGCTGGCCATTGCGTTTGGCCTCATGAAGCTGGAC
CCTGGTGCAACAATTCGCTTGTCGAAGAATCTAAGGGTCTGCGCAGACTGCCACTCGGCC
ACAAAGTTGATTTCGAAGGTGTACGATAGGGAGATTGTTGTTCGAGACCGGAATATATTT
CATCATTTTAAGGATGGTACTTGCTCCTGCAATGATTACTGGTGA