Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d025680_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:10:126096966:126110392:1 gene:Zm00001d025680 gene_biotype:protein_coding transcript_biotype:protein_coding description:PI-PLC X domain-containing protein

Sequence

ATGGCGGCGCCTCTGCTCCCCTCTTCCGTCTCCGTGCTCCTCTCGCTCCACATCGCGCTG
CTGCTGGTCCTCTGCTCCAGCCAGGTAGGAGATTCCTGCTCCTCAGTGCGGGACTGCGGC
ACGGGCCTCTACTGCGGCAACTGCCCCGCCGCAGGCAGGACCAAGCTCTCCTGCATCAGG
GACCTAGCCATCCAGCCCACCTCCATTGTGAAGGGGCTACCTTTCAACAGGTACTCATGG
CTCGTCACCCACAATTCCTTTTCCATCCTCGGGGAGCCGTCGCGCACTGGGGTTGAGAGG
GTCACGTTCTACAACCAGGAGGACTCCGTCACCAACCAATTGAGGAATGGTGTCAGGGGA
TTGATGCTTGATATGTATGACTTCAACGATGATGTATGGCTCTGCCACTCCCTGCAAGGG
CAATGCTATAACTTCACTGCTTTCGTACCAGCAGTTGACACACTAAAAGAGGTGGAAGCA
TTTCTCTCCGAGAATCCCACAGAGATCATAACAATATTTATTGAGGATTATGTTCATTCA
CCGATGGGACTGAGCAAGGTCTTTACTGCTGCTGACTTGATGAAGTATTGGTATCCAATC
TCGGAAATGCCAACTAGTGGCAAGGACTGGCCAAGTGTCACAGATATGGTTGCAAAAAAC
CGCAGGTTGCTGGTGTTTACTTCTGATGCTTCAAAGGAGGCTAGTGAAGGAATAGCTTAC
CAATGGAGCTACTTGCTAGAGAATGAACCTGGAGATCCAGGGATTGTGCCTGGTTCTTGT
CCAAACAGGAAGGAATCGCAGCCACTGAACTCAAGGCCGGCATCTCTATTTCTGCAAAAT
TACTTCCCCACGATCCCCGTGCAGAACGAAGCATGTAAAGAGAATTCTGGGCTACCACAA
ATGGCCCAGGCTTGTTATGCCGCAGCTGGGAATAGGATCCCGAACTTCATAGCTGTGAAT
TTCTACATGCGAAGCGACGGTGGTGGTGTTTTCGATGTTCAAGACAGAATCAATGGCCGC
ACCTTATGTGGGTGTGACACCATTGCTGCTTGCCAGGCTGGAGCACCAATGGGTGCATGC
AAGGACACGGGGGCACCAAATCAGACTACATCGCCCTCTGTAAATGGAAATGTCTATTCA
GGAACTATAGAATTCAAGACGCATTCCACTAGTGCTGCTAGCAATAACAACATCCGGAGT
AGATCTGTTTTTCTGCTAAGGCTGCAGTTGACTTTGCTGCTCTTTTTCTCTTTCAGGCTC
TAG

Peptide Sequence

PEP ID

Zm00001d025680_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:10:126096966:126110392:1 gene:Zm00001d025680 transcript:Zm00001d025680_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:PI-PLC X domain-containing protein

Sequence

MAAPLLPSSVSVLLSLHIALLLVLCSSQVGDSCSSVRDCGTGLYCGNCPAAGRTKLSCIR
DLAIQPTSIVKGLPFNRYSWLVTHNSFSILGEPSRTGVERVTFYNQEDSVTNQLRNGVRG
LMLDMYDFNDDVWLCHSLQGQCYNFTAFVPAVDTLKEVEAFLSENPTEIITIFIEDYVHS
PMGLSKVFTAADLMKYWYPISEMPTSGKDWPSVTDMVAKNRRLLVFTSDASKEASEGIAY
QWSYLLENEPGDPGIVPGSCPNRKESQPLNSRPASLFLQNYFPTIPVQNEACKENSGLPQ
MAQACYAAAGNRIPNFIAVNFYMRSDGGGVFDVQDRINGRTLCGCDTIAACQAGAPMGAC
KDTGAPNQTTSPSVNGNVYSGTIEFKTHSTSAASNNNIRSRSVFLLRLQLTLLLFFSFRL

Transcript Sequence

Transcript ID

Zm00001d025680_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:126096966:126110392:1 gene:Zm00001d025680 gene_biotype:protein_coding transcript_biotype:protein_coding description:PI-PLC X domain-containing protein

Sequence

AGACGGCTGTACTGTACTGATCACTCCTGGCCTCTGCGAAGGAAAGAAGAGGTGGGGGAG
GCTGGTTTGGTGGCCTGTACCGATTTGCAGCAGCTGATGGCGGCGCCTCTGCTCCCCTCT
TCCGTCTCCGTGCTCCTCTCGCTCCACATCGCGCTGCTGCTGGTCCTCTGCTCCAGCCAG
GTAGGAGATTCCTGCTCCTCAGTGCGGGACTGCGGCACGGGCCTCTACTGCGGCAACTGC
CCCGCCGCAGGCAGGACCAAGCTCTCCTGCATCAGGGACCTAGCCATCCAGCCCACCTCC
ATTGTGAAGGGGCTACCTTTCAACAGGTACTCATGGCTCGTCACCCACAATTCCTTTTCC
ATCCTCGGGGAGCCGTCGCGCACTGGGGTTGAGAGGGTCACGTTCTACAACCAGGAGGAC
TCCGTCACCAACCAATTGAGGAATGGTGTCAGGGGATTGATGCTTGATATGTATGACTTC
AACGATGATGTATGGCTCTGCCACTCCCTGCAAGGGCAATGCTATAACTTCACTGCTTTC
GTACCAGCAGTTGACACACTAAAAGAGGTGGAAGCATTTCTCTCCGAGAATCCCACAGAG
ATCATAACAATATTTATTGAGGATTATGTTCATTCACCGATGGGACTGAGCAAGGTCTTT
ACTGCTGCTGACTTGATGAAGTATTGGTATCCAATCTCGGAAATGCCAACTAGTGGCAAG
GACTGGCCAAGTGTCACAGATATGGTTGCAAAAAACCGCAGGTTGCTGGTGTTTACTTCT
GATGCTTCAAAGGAGGCTAGTGAAGGAATAGCTTACCAATGGAGCTACTTGCTAGAGAAT
GAACCTGGAGATCCAGGGATTGTGCCTGGTTCTTGTCCAAACAGGAAGGAATCGCAGCCA
CTGAACTCAAGGCCGGCATCTCTATTTCTGCAAAATTACTTCCCCACGATCCCCGTGCAG
AACGAAGCATGTAAAGAGAATTCTGGGCTACCACAAATGGCCCAGGCTTGTTATGCCGCA
GCTGGGAATAGGATCCCGAACTTCATAGCTGTGAATTTCTACATGCGAAGCGACGGTGGT
GGTGTTTTCGATGTTCAAGACAGAATCAATGGCCGCACCTTATGTGGGTGTGACACCATT
GCTGCTTGCCAGGCTGGAGCACCAATGGGTGCATGCAAGGACACGGGGGCACCAAATCAG
ACTACATCGCCCTCTGTAAATGGAAATGTCTATTCAGGAACTATAGAATTCAAGACGCAT
TCCACTAGTGCTGCTAGCAATAACAACATCCGGAGTAGATCTGTTTTTCTGCTAAGGCTG
CAGTTGACTTTGCTGCTCTTTTTCTCTTTCAGGCTCTAGTTTTCATATATCTGGACCTTT
TTCCCACCTACTGTATAGCTGAAAGTAACATCAGCTTTTGTTGTGAGCTTGCTTTCTCTA
TTGGGATGACGGTTAGTGCCTTGCTAGCTTTATAATCTATAGTTGGGAGGGGGTGTGGAT
CAATGTTAATGAAAGAATGGGTAGAGATCTTCCTCTGTTCTCCGAGGAGGAGTAATACGG
CTACAACCTACAAAGAAACTGATGAGTGGAAGTTCATGCTGGTTATGTGATTACTAGAT