Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d025652_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:10:125102977:125107710:-1 gene:Zm00001d025652 gene_biotype:protein_coding transcript_biotype:protein_coding description:Indole-3-glycerol phosphate synthase chloroplastic
Sequence

ATGGAAGCACTAGCCATTGGATCCGCGCCTCGCCGTCCGGGCGCAAGGTACTCCCAACTC
CGCCGCCCCGGAACCCTCGCCGTCACCACCACAGCCACAGTTGCATGCCGCCCCCTCACG
GCGCCCTCCATGGACGCCGCCGTTGGCCGCCCGAGCCGCGCGCCTATCCGCTGCACCAGC
GCGGAGACGGACTCGGTGGATGAGGTCGCGACGAGCTCGCACGCCGCGGAGGCCAACGCG
GGGGGCACCACGGAGCAAGAGGGCAACGGGAGCCCCGTGGCCGCCGCTGCCGCGTACTCC
CCCGTGGTCGCCGGCGTCGACGGGATAAGGATCCGGCGGCGGCCCGTGACGGGGCCCGCG
GTGCACTACGTGGGCCCGTTCCAGTTCCGCCTCGAGAACGAGGGGAACACGCCGCGGAAC
ATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAGGTTTCGCAGGCACGTCTGGGAAGT
TTTTACAACTTGGAGGCTATACGCAATGCTGGAGTCCAGGTTCATGACGAAAGAGAAATG
GACCGTGTTTTAGGGATTGATGGTGTACAGCTCATCGGCATCAATAACCGTAATCTCGAG
ACATTTGAAGTTGATATTACAAACACAAAAAAGCTTCTGGAAGGTGAACGAGGACAGGTT
ATAGCTCAAAAGGATGTAATTGTTGTAGGAGAATCTGCGCTGTTCACTCCTGATGATATC
TCGTTCGTTCAAAACGCTGGGGTCAAAGCGGTTCTCGTCGGGGAATCCCTCATCAAGCAG
GAGGATCCAGGGAAAGCAATCGCTGGGCTTTTCGGCAAAGATATCTCGCATGCTGGTGCT
ACCTAG

Peptide Sequence

PEP ID

Zm00001d025652_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:10:125102977:125107710:-1 gene:Zm00001d025652 transcript:Zm00001d025652_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:Indole-3-glycerol phosphate synthase chloroplastic
Sequence

MEALAIGSAPRRPGARYSQLRRPGTLAVTTTATVACRPLTAPSMDAAVGRPSRAPIRCTS
AETDSVDEVATSSHAAEANAGGTTEQEGNGSPVAAAAAYSPVVAGVDGIRIRRRPVTGPA
VHYVGPFQFRLENEGNTPRNILEKIIWNKDVEVSQARLGSFYNLEAIRNAGVQVHDEREM
DRVLGIDGVQLIGINNRNLETFEVDITNTKKLLEGERGQVIAQKDVIVVGESALFTPDDI
SFVQNAGVKAVLVGESLIKQEDPGKAIAGLFGKDISHAGAT

Transcript Sequence

Transcript ID

Zm00001d025652_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:125102977:125107710:-1 gene:Zm00001d025652 gene_biotype:protein_coding transcript_biotype:protein_coding description:Indole-3-glycerol phosphate synthase chloroplastic
Sequence

ACCTCTGCTCTGCGGGCGCTTCAGATGGAAGCACTAGCCATTGGATCCGCGCCTCGCCGT
CCGGGCGCAAGGTACTCCCAACTCCGCCGCCCCGGAACCCTCGCCGTCACCACCACAGCC
ACAGTTGCATGCCGCCCCCTCACGGCGCCCTCCATGGACGCCGCCGTTGGCCGCCCGAGC
CGCGCGCCTATCCGCTGCACCAGCGCGGAGACGGACTCGGTGGATGAGGTCGCGACGAGC
TCGCACGCCGCGGAGGCCAACGCGGGGGGCACCACGGAGCAAGAGGGCAACGGGAGCCCC
GTGGCCGCCGCTGCCGCGTACTCCCCCGTGGTCGCCGGCGTCGACGGGATAAGGATCCGG
CGGCGGCCCGTGACGGGGCCCGCGGTGCACTACGTGGGCCCGTTCCAGTTCCGCCTCGAG
AACGAGGGGAACACGCCGCGGAACATCCTCGAGAAAATCATCTGGAACAAGGACGTCGAG
GTTTCGCAGGCACGTCTGGGAAGTTTTTACAACTTGGAGGCTATACGCAATGCTGGAGTC
CAGGTTCATGACGAAAGAGAAATGGACCGTGTTTTAGGGATTGATGGTGTACAGCTCATC
GGCATCAATAACCGTAATCTCGAGACATTTGAAGTTGATATTACAAACACAAAAAAGCTT
CTGGAAGGTGAACGAGGACAGGTTATAGCTCAAAAGGATGTAATTGTTGTAGGAGAATCT
GCGCTGTTCACTCCTGATGATATCTCGTTCGTTCAAAACGCTGGGGTCAAAGCGGTTCTC
GTCGGGGAATCCCTCATCAAGCAGGAGGATCCAGGGAAAGCAATCGCTGGGCTTTTCGGC
AAAGATATCTCGCATGCTGGTGCTACCTAGAGACGACGCAGAAGAGCAACAGAATACCAG
AAACGCTACTCCGGGTTGCATCATTTTGTGTAGGGGAGAAAATCGAGCGTTGCAATCAGA
AATCCACCCTTTCGCAGAGTTTTGATCGGTCGTTTTGTTTACCTGACCTGCCAACTTCCC
CATGCTGCTATTTTTTTGTGACCGAGCCATCTCAATAATTACAGATTTTAGTGCACAAGA
TGTATATGTTCAAAAAGTTGGATGTAGTTTCAAGCAGCTTGATTTTT