Plant GARDEN
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d025625_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:10:124407255:124409576:-1 gene:Zm00001d025625 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein mitochondrial
Sequence

ATGTCGCCGACCCAAGCCGCGACGCCTCTGGCCATCCTCTCCCGCTTCCTCTCGTCGCCG
CCGTCCCCCTCGCCGGTGCTCGAGTTACTTCGCGTCCACGCGCTCGCCGTTACCTCGGGC
CTCTACCAACGCCCCGACCTCGCAGCAAAGCTCGTCTCCGCCTACTCCTCCGCGGGGCGC
CCCGGGCTCGCGGCGCTCGCCTTCTCGGCTTCCCCCCGTCCCGATGCATTCCTCTGGAAC
TCCCTCATCCGCACCCACCACTGCGCATCCGACTTCGTGGCCGCGCTTTCTGCCCACCGC
CGCATGCTCGCCTCTGGCGCGCGGCCTTCCCCCTTCACCGCGCCGCTCGCTGCCTCCGCC
TCCGCAGAGCTCGGCGCGCTCGGCGTCGGCGCCGCCGTGCACGCGTACTGCGTCAGGTAC
GGCCTCCTCGTCGGCGATGGAGACTCCGTCGCCGTCGCATCCTCTCTGGTGTACATGTAC
GCTAGGTGCGGCAACGTCAGAGACGCTGTGAAGGTGTTCGAGGAAATGCCCGAGAGGGAC
GTGGTCGCGTGGACCGCGGTGATATCAGGGTGCGTGCGGAACGGGGAGAGTGGGGAGGGG
TTGCGCTATCTGGTGGAGATGGTCAGGCTTGCAGGCGATGGCAGTGTCAGGCCAAACTCA
CGGACGATGGAGAGTGGCTTGGAGGCATGCGGGGTGCTAGATGAGCTGAATTCTGGTAGA
TGCCTGCACGGCTATGTAGTGAAAGTCGGGATTGGAGATTCCCCCATGGTAATTTCTGCC
CTCTTCTCTATGTACTCGAAGTGTTACAGCACTGAGGATGCATGCGCTTTATTCCTGGAG
TTGCCAGAGAAAGATGTGGTTTCCTGGACAAGTTTGATTGGAATATACTGTCGGAGAGGG
CTTATTACGGAGGCTATGGAGTTGTTCCAGCAGATGATGGAGTCAGGTCTCCAGCCAGAT
GAGATTCTCGTTAGTTGTGTGCTTTCAGGGTTGGGTAACAATGGCAATGTACACGGAGGG
AAGACATTTCATGCAGTTATAACGAAGAGAAACTTTGGAGATAGTGTTTTGATTGGAAAT
GCTTTGATATCAATGTATGGAAAATTTGAGATGGTGGACAGTGCAGGCAGAGTTTTTAGA
TTGTTGCATCAAAGAGATGCGGACTCATGGAACTTGATGGTTGTAGGATATTGCAAAGCT
GGATGTGATGTCAAATGCTTGGAGCTGTATCGTGAGATGCAGTTGAGAGATAAGTATGAA
TTTTGGTGTGTTGCCGACAGCTTGGTTTCTGCAATCTCTTCTTGCTCACGGCTAGCAGAA
CTAAGACTAGGTCGATCAGCACACTGTTATTCAATCAAGCACTTGCTTGATGAGGATTCA
TCAGTTGCAAATGTTTTAATTGGCATGTATGGGAGGTGCGGAAAATTTGATCATGCATGC
AAAATATTTGGCCTGGCCAAACTGAAGGGTGATGTTGTCACATGGAATACACTGATATCT
AGCTATGCCCATCTGGGACATTCAAATGCTGCGATGTCACTTTATGATCAAATGCTTATT
GAAGGCTTGACACCCAACTCAACAACCTTGATTACTGTCATTTCAGCCTGTGCAAACTTG
GTTGCATTGGAACGTGGAGAGAAGATACATTCTTACGTGAAAGAAATGGGGTGGGACTAT
GATGTATCAATCAACACAGCACTTATTGACATGTATGCTAAATGTGGGCAGCTTGGAATT
GCAAGAAGGATTTTTGATTCTATGCTTCAACATGATGTTGTTGCATGGAATGTTATGATA
TCAGGGTATGGGATGCATGGGGAAGCAAAACAAGCATTAGAATTATTTGGTAAGATGGAA
GGAGGAAGTATTAAGCCTAATGGTGTAACCTTTCTTGCTATTCTATCTGCTTTATGCCAT
TCAGGGCTTCTTGAGGAGGGCAGGAAGGTGTTCACAAGAATGGGAAAATACTCACTTGAG
CCTAACCTGAAGCATTATGCTTGCATGGTGGATCTCCTAGGGAAATCTGGGCATCTCCAA
GAAGCAGAAGATATGGTTTTAGCCATGCCAATAGAACCTGATGGCGGGATATGGGGAACT
TTGCTTAGTGCCTGCAAATTGCATGACAACTTTGAGATGGGTTTAAGGATTGCAAAAAAG
GCATTTGCTTCTGACCCAGAAAATGAGGGATATTACATTTTAATATCTAATTCTTATGGT
GGTGCTAAAAAATGGGATGAGATAGAGAAACTAAGAGAAACGATGAAGAATCTTGGAGTT
CAAAAAGGTGTAGGCTGGAGTGCAGTTGATTATGGCGTGTGA

Peptide Sequence

PEP ID

Zm00001d025625_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:10:124407255:124409576:-1 gene:Zm00001d025625 transcript:Zm00001d025625_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein mitochondrial
Sequence

MSPTQAATPLAILSRFLSSPPSPSPVLELLRVHALAVTSGLYQRPDLAAKLVSAYSSAGR
PGLAALAFSASPRPDAFLWNSLIRTHHCASDFVAALSAHRRMLASGARPSPFTAPLAASA
SAELGALGVGAAVHAYCVRYGLLVGDGDSVAVASSLVYMYARCGNVRDAVKVFEEMPERD
VVAWTAVISGCVRNGESGEGLRYLVEMVRLAGDGSVRPNSRTMESGLEACGVLDELNSGR
CLHGYVVKVGIGDSPMVISALFSMYSKCYSTEDACALFLELPEKDVVSWTSLIGIYCRRG
LITEAMELFQQMMESGLQPDEILVSCVLSGLGNNGNVHGGKTFHAVITKRNFGDSVLIGN
ALISMYGKFEMVDSAGRVFRLLHQRDADSWNLMVVGYCKAGCDVKCLELYREMQLRDKYE
FWCVADSLVSAISSCSRLAELRLGRSAHCYSIKHLLDEDSSVANVLIGMYGRCGKFDHAC
KIFGLAKLKGDVVTWNTLISSYAHLGHSNAAMSLYDQMLIEGLTPNSTTLITVISACANL
VALERGEKIHSYVKEMGWDYDVSINTALIDMYAKCGQLGIARRIFDSMLQHDVVAWNVMI
SGYGMHGEAKQALELFGKMEGGSIKPNGVTFLAILSALCHSGLLEEGRKVFTRMGKYSLE
PNLKHYACMVDLLGKSGHLQEAEDMVLAMPIEPDGGIWGTLLSACKLHDNFEMGLRIAKK
AFASDPENEGYYILISNSYGGAKKWDEIEKLRETMKNLGVQKGVGWSAVDYGV

Transcript Sequence

Transcript ID

Zm00001d025625_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:124407255:124409576:-1 gene:Zm00001d025625 gene_biotype:protein_coding transcript_biotype:protein_coding description:Pentatricopeptide repeat-containing protein mitochondrial
Sequence

ATGTCGCCGACCCAAGCCGCGACGCCTCTGGCCATCCTCTCCCGCTTCCTCTCGTCGCCG
CCGTCCCCCTCGCCGGTGCTCGAGTTACTTCGCGTCCACGCGCTCGCCGTTACCTCGGGC
CTCTACCAACGCCCCGACCTCGCAGCAAAGCTCGTCTCCGCCTACTCCTCCGCGGGGCGC
CCCGGGCTCGCGGCGCTCGCCTTCTCGGCTTCCCCCCGTCCCGATGCATTCCTCTGGAAC
TCCCTCATCCGCACCCACCACTGCGCATCCGACTTCGTGGCCGCGCTTTCTGCCCACCGC
CGCATGCTCGCCTCTGGCGCGCGGCCTTCCCCCTTCACCGCGCCGCTCGCTGCCTCCGCC
TCCGCAGAGCTCGGCGCGCTCGGCGTCGGCGCCGCCGTGCACGCGTACTGCGTCAGGTAC
GGCCTCCTCGTCGGCGATGGAGACTCCGTCGCCGTCGCATCCTCTCTGGTGTACATGTAC
GCTAGGTGCGGCAACGTCAGAGACGCTGTGAAGGTGTTCGAGGAAATGCCCGAGAGGGAC
GTGGTCGCGTGGACCGCGGTGATATCAGGGTGCGTGCGGAACGGGGAGAGTGGGGAGGGG
TTGCGCTATCTGGTGGAGATGGTCAGGCTTGCAGGCGATGGCAGTGTCAGGCCAAACTCA
CGGACGATGGAGAGTGGCTTGGAGGCATGCGGGGTGCTAGATGAGCTGAATTCTGGTAGA
TGCCTGCACGGCTATGTAGTGAAAGTCGGGATTGGAGATTCCCCCATGGTAATTTCTGCC
CTCTTCTCTATGTACTCGAAGTGTTACAGCACTGAGGATGCATGCGCTTTATTCCTGGAG
TTGCCAGAGAAAGATGTGGTTTCCTGGACAAGTTTGATTGGAATATACTGTCGGAGAGGG
CTTATTACGGAGGCTATGGAGTTGTTCCAGCAGATGATGGAGTCAGGTCTCCAGCCAGAT
GAGATTCTCGTTAGTTGTGTGCTTTCAGGGTTGGGTAACAATGGCAATGTACACGGAGGG
AAGACATTTCATGCAGTTATAACGAAGAGAAACTTTGGAGATAGTGTTTTGATTGGAAAT
GCTTTGATATCAATGTATGGAAAATTTGAGATGGTGGACAGTGCAGGCAGAGTTTTTAGA
TTGTTGCATCAAAGAGATGCGGACTCATGGAACTTGATGGTTGTAGGATATTGCAAAGCT
GGATGTGATGTCAAATGCTTGGAGCTGTATCGTGAGATGCAGTTGAGAGATAAGTATGAA
TTTTGGTGTGTTGCCGACAGCTTGGTTTCTGCAATCTCTTCTTGCTCACGGCTAGCAGAA
CTAAGACTAGGTCGATCAGCACACTGTTATTCAATCAAGCACTTGCTTGATGAGGATTCA
TCAGTTGCAAATGTTTTAATTGGCATGTATGGGAGGTGCGGAAAATTTGATCATGCATGC
AAAATATTTGGCCTGGCCAAACTGAAGGGTGATGTTGTCACATGGAATACACTGATATCT
AGCTATGCCCATCTGGGACATTCAAATGCTGCGATGTCACTTTATGATCAAATGCTTATT
GAAGGCTTGACACCCAACTCAACAACCTTGATTACTGTCATTTCAGCCTGTGCAAACTTG
GTTGCATTGGAACGTGGAGAGAAGATACATTCTTACGTGAAAGAAATGGGGTGGGACTAT
GATGTATCAATCAACACAGCACTTATTGACATGTATGCTAAATGTGGGCAGCTTGGAATT
GCAAGAAGGATTTTTGATTCTATGCTTCAACATGATGTTGTTGCATGGAATGTTATGATA
TCAGGGTATGGGATGCATGGGGAAGCAAAACAAGCATTAGAATTATTTGGTAAGATGGAA
GGAGGAAGTATTAAGCCTAATGGTGTAACCTTTCTTGCTATTCTATCTGCTTTATGCCAT
TCAGGGCTTCTTGAGGAGGGCAGGAAGGTGTTCACAAGAATGGGAAAATACTCACTTGAG
CCTAACCTGAAGCATTATGCTTGCATGGTGGATCTCCTAGGGAAATCTGGGCATCTCCAA
GAAGCAGAAGATATGGTTTTAGCCATGCCAATAGAACCTGATGGCGGGATATGGGGAACT
TTGCTTAGTGCCTGCAAATTGCATGACAACTTTGAGATGGGTTTAAGGATTGCAAAAAAG
GCATTTGCTTCTGACCCAGAAAATGAGGGATATTACATTTTAATATCTAATTCTTATGGT
GGTGCTAAAAAATGGGATGAGATAGAGAAACTAAGAGAAACGATGAAGAATCTTGGAGTT
CAAAAAGGTGTAGGCTGGAGTGCAGTTGATTATGGCGTGTGA