Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d025475_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:10:120015217:120017158:-1 gene:Zm00001d025475 gene_biotype:protein_coding transcript_biotype:protein_coding description:Endoglucanase 9
Sequence

ATGACGAGGCCAGCACCACCATCATCGCAGGCTCTAGTGCTTCTCGCCGCCGTCGCCGTC
TCGCTCCTTCTTTCCCGCTCCAGCCATGTCGCTGCCGGCGGACACCCTGATTACGCGGAC
GCGCTCGCCAAGGCGATACTCTTCTTCCAGGGACAGAGGTCAGGCCAGCTGCCGCCGGAC
CAGGCTGTCACGTGGAGGTCCAACTCCGGCCTCTCCGACGGCTCCGCCGCAAACGTCGAC
CTCACCGGCGGGTACTACGACGGCGGCGACAACGCCAAGTTCGGCTTCCCGATGGCCTTC
ACGACGACGATGCTGTCGTGGAGCGTGCTGGAGCACGGCGGGCGGATGAAGGCGCGCGTG
CGCGACGCGCGCGACGCCGTACGGTGGGGCGCGGACTACCTGCTCAAGGCCGCCACGCAG
ACCCCGGGCAGGCTGTACGTGGGCGTGGGCGACCCCGGCGCAGACCACCGCTGCTGGGAG
CGGCCCGAGGACATGGACACGCCGAGGGCCGTGTACTGGGTGTCCGCGTCGGCGCCCGGC
TCCGACGTCGCCGCCGAGACGGCGGCCGCGCTCGCCGCCGCCAGCATGGTGTTCAGGGCC
GCCGACCGGGCCTACTCCCGGAGGCTGCTCGCCGCGGCGCGGGGCGTGATGGAGCTCGCC
GTGCAGCACCAGGGGAAGTACAGCGACTTCGTTGGCGGCGACGTCGGCGCGTACTACCAG
TCGTACTCCGGCTACAAGGTCCCCAGATCAATGACCTCCGGGATCAGAGTGGACGAGCTC
CTGTGGGGGTCGGCGTGGCTGCTCTGGGCCACCAACAGCTCCTCGTACCTCGCCTACCTC
TACTCCTTGGGGGACAACGACGGCGTCGACATGTTCAGCTGGGACAACAAGCTCGCCGGA
GCGCGCGTGCTGCTGTCACGGAGAGCTCTGGTGAACGGCGACACGAGGCTGGAGCCGTTC
AGGCAGCAGGCCGAGGACTTCTTCTGCAGGATCCTGCGCGACTCCCCTTCCTCCACGACG
CAGTACACGCCGGGCGGCCTGATGCACAAGTCGGGGTACGCCAACCTGCAGTACGTCACC
TCGGCCAGCTTCCTGCTCACCACCTACGCCAAGTACATGGCCGCCACCAAGCACACCTTC
TCCTGCCAGAGCCTCCCCGTCACCGCCACCTCCCTCAGGGCTCTCGCCAAGCAGCAGGTG
GACTACATCTTGGGCGCCAACCCCCAGGGCATGTCCTACATGGTGAACTTCGGCGCGCGG
TGGCCGCAGAGGATCCACCACCGGGCGTCGTCGCTGCCGTCGGTGGCCAGCCACCCGGCG
CACATCGGGTGCCAGGAGGGCTTCCAGAGCTACTTCTATTCCAGCGGCGCCAACCCGAAC
GTGCACACGGGCGCCGTCGTCGGCGGGCCCGACGAGCACGACGAGTTCCCGGACGATCGC
GCCGACTACGCGCGGTCGGAGCCGACGACGTACACCAACGCGCCCCTCGTCGGCTGCCTC
GCCTACCTCGCGGGCACGTACAGGACCTAG

Peptide Sequence

PEP ID

Zm00001d025475_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:10:120015217:120017158:-1 gene:Zm00001d025475 transcript:Zm00001d025475_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Endoglucanase 9
Sequence

MTRPAPPSSQALVLLAAVAVSLLLSRSSHVAAGGHPDYADALAKAILFFQGQRSGQLPPD
QAVTWRSNSGLSDGSAANVDLTGGYYDGGDNAKFGFPMAFTTTMLSWSVLEHGGRMKARV
RDARDAVRWGADYLLKAATQTPGRLYVGVGDPGADHRCWERPEDMDTPRAVYWVSASAPG
SDVAAETAAALAAASMVFRAADRAYSRRLLAAARGVMELAVQHQGKYSDFVGGDVGAYYQ
SYSGYKVPRSMTSGIRVDELLWGSAWLLWATNSSSYLAYLYSLGDNDGVDMFSWDNKLAG
ARVLLSRRALVNGDTRLEPFRQQAEDFFCRILRDSPSSTTQYTPGGLMHKSGYANLQYVT
SASFLLTTYAKYMAATKHTFSCQSLPVTATSLRALAKQQVDYILGANPQGMSYMVNFGAR
WPQRIHHRASSLPSVASHPAHIGCQEGFQSYFYSSGANPNVHTGAVVGGPDEHDEFPDDR
ADYARSEPTTYTNAPLVGCLAYLAGTYRT

Transcript Sequence

Transcript ID

Zm00001d025475_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:120015217:120017158:-1 gene:Zm00001d025475 gene_biotype:protein_coding transcript_biotype:protein_coding description:Endoglucanase 9
Sequence

ATGACGAGGCCAGCACCACCATCATCGCAGGCTCTAGTGCTTCTCGCCGCCGTCGCCGTC
TCGCTCCTTCTTTCCCGCTCCAGCCATGTCGCTGCCGGCGGACACCCTGATTACGCGGAC
GCGCTCGCCAAGGCGATACTCTTCTTCCAGGGACAGAGGTCAGGCCAGCTGCCGCCGGAC
CAGGCTGTCACGTGGAGGTCCAACTCCGGCCTCTCCGACGGCTCCGCCGCAAACGTCGAC
CTCACCGGCGGGTACTACGACGGCGGCGACAACGCCAAGTTCGGCTTCCCGATGGCCTTC
ACGACGACGATGCTGTCGTGGAGCGTGCTGGAGCACGGCGGGCGGATGAAGGCGCGCGTG
CGCGACGCGCGCGACGCCGTACGGTGGGGCGCGGACTACCTGCTCAAGGCCGCCACGCAG
ACCCCGGGCAGGCTGTACGTGGGCGTGGGCGACCCCGGCGCAGACCACCGCTGCTGGGAG
CGGCCCGAGGACATGGACACGCCGAGGGCCGTGTACTGGGTGTCCGCGTCGGCGCCCGGC
TCCGACGTCGCCGCCGAGACGGCGGCCGCGCTCGCCGCCGCCAGCATGGTGTTCAGGGCC
GCCGACCGGGCCTACTCCCGGAGGCTGCTCGCCGCGGCGCGGGGCGTGATGGAGCTCGCC
GTGCAGCACCAGGGGAAGTACAGCGACTTCGTTGGCGGCGACGTCGGCGCGTACTACCAG
TCGTACTCCGGCTACAAGGTCCCCAGATCAATGACCTCCGGGATCAGAGTGGACGAGCTC
CTGTGGGGGTCGGCGTGGCTGCTCTGGGCCACCAACAGCTCCTCGTACCTCGCCTACCTC
TACTCCTTGGGGGACAACGACGGCGTCGACATGTTCAGCTGGGACAACAAGCTCGCCGGA
GCGCGCGTGCTGCTGTCACGGAGAGCTCTGGTGAACGGCGACACGAGGCTGGAGCCGTTC
AGGCAGCAGGCCGAGGACTTCTTCTGCAGGATCCTGCGCGACTCCCCTTCCTCCACGACG
CAGTACACGCCGGGCGGCCTGATGCACAAGTCGGGGTACGCCAACCTGCAGTACGTCACC
TCGGCCAGCTTCCTGCTCACCACCTACGCCAAGTACATGGCCGCCACCAAGCACACCTTC
TCCTGCCAGAGCCTCCCCGTCACCGCCACCTCCCTCAGGGCTCTCGCCAAGCAGCAGGTG
GACTACATCTTGGGCGCCAACCCCCAGGGCATGTCCTACATGGTGAACTTCGGCGCGCGG
TGGCCGCAGAGGATCCACCACCGGGCGTCGTCGCTGCCGTCGGTGGCCAGCCACCCGGCG
CACATCGGGTGCCAGGAGGGCTTCCAGAGCTACTTCTATTCCAGCGGCGCCAACCCGAAC
GTGCACACGGGCGCCGTCGTCGGCGGGCCCGACGAGCACGACGAGTTCCCGGACGATCGC
GCCGACTACGCGCGGTCGGAGCCGACGACGTACACCAACGCGCCCCTCGTCGGCTGCCTC
GCCTACCTCGCGGGCACGTACAGGACCTAG