Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d025469_T002
CDS Infomation

cds chromosome:B73_RefGen_v4:10:119875894:119878635:1 gene:Zm00001d025469 gene_biotype:protein_coding transcript_biotype:protein_coding description:smr (Small MutS Related) domain-containing protein
Sequence

ATGCATAGACAGAAGAACCCAAACTCTGGGTGGGCTGCGTTTGATCGCAAGCAGCGCAGT
GCAGATGGCAGTGGGTATGAAGGTGATGCTGATCCATTTCCGTCTCTCTCAAATTCTGGA
GCCTCTAATATTGCTAGTAGCTCCATTACAGAAAAGAATGGGCTAAAACGAAAGCCCTTT
GCTTCAGTGGTTCGCCCTTCTGTTGATTCTGGAGCTGTTAGTACTGGATGCGGAAATAAG
AATTCTGCTAATCACGTGGACAGCGGGAATCACGGTGCAATCTCTGCACCTCTTAATAAA
GTTAAGATCTTGAAAGATGCACACAGTTGGGCCGACATTCACTTAATTGAGGATGTACTA
GCTGCTGTGAATAATGATGTCGGACAAGCATCTGATTTGTTGAAAGTTATGGACTCTCCT
GCCTTGCAGACTGGAGAGGGCAGAACATCTGGCCAACTGGCTGATGTGATGAATAAAACA
CACGGATCACCATCAGAAAGTGCTGCAGCAGGCAAAGCAAATCCAGATAGCTCACAGTTG
TTGCTGCCCCTGATGAACTTTCCCTCTATACCCTTGCAGCCTGAATTCGAAGATATTGAT
GATGAATACTTCAGCTACCGGAAAGATGCATTGAAAATGATGAGGGCTGCCACAAAGCAT
TCCCAGTCTGCCAGTAATGCATTTTTGAGAGATGACCATGCTGCTGCCAAGGAACTTTCT
CTCAGAGCTCAGGAAGAGCGGGCAGCTGCTGAAAAGCTAAATAACAAGGCAGCGGAAGAA
ATTTTTCGCCTTAGGAATAGCAATAATGACATCTGGAAGATAGACATGCATGGTCTTCAT
GCATCAGAGGCTGTGGCAGTATTGGAGAGGCATCTCCACATGATAGAGTTCCAGCAACCT
GGGAATAAGTCAGCCTCATCTGAGGACTTAGCTAAGTTGGAATCTGCATATTCTGAATCA
ACCACTGGTTCAAACATTGAGCTTGCTGCTGAGAAGGTGGTCTTACGCCGGCCTAAGCAG
TCTATCTTACATGTGATCACAGGGATGGGTAACCATAGCAAAGGGCAGGCTTCACTACCT
GTTGCCGTTAGGGGTTTCCTTATTGAGAACGGGTAA

Peptide Sequence

PEP ID

Zm00001d025469_P002
PEP Infomation

pep chromosome:B73_RefGen_v4:10:119875894:119878635:1 gene:Zm00001d025469 transcript:Zm00001d025469_T002 gene_biotype:protein_coding transcript_biotype:protein_coding description:smr (Small MutS Related) domain-containing protein
Sequence

MHRQKNPNSGWAAFDRKQRSADGSGYEGDADPFPSLSNSGASNIASSSITEKNGLKRKPF
ASVVRPSVDSGAVSTGCGNKNSANHVDSGNHGAISAPLNKVKILKDAHSWADIHLIEDVL
AAVNNDVGQASDLLKVMDSPALQTGEGRTSGQLADVMNKTHGSPSESAAAGKANPDSSQL
LLPLMNFPSIPLQPEFEDIDDEYFSYRKDALKMMRAATKHSQSASNAFLRDDHAAAKELS
LRAQEERAAAEKLNNKAAEEIFRLRNSNNDIWKIDMHGLHASEAVAVLERHLHMIEFQQP
GNKSASSEDLAKLESAYSESTTGSNIELAAEKVVLRRPKQSILHVITGMGNHSKGQASLP
VAVRGFLIENG

Transcript Sequence

Transcript ID

Zm00001d025469_T002
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:119875894:119878635:1 gene:Zm00001d025469 gene_biotype:protein_coding transcript_biotype:protein_coding description:smr (Small MutS Related) domain-containing protein
Sequence

CCACTTCACCGCGCGGAAAAAACAAAGAGATTCCCCTTTGCTCTACAGGAAGCGCCGACG
CCGTTGATGGAATTCGGAAGGACCAAAGCTGCTGCCGTAGCCCTGATCCCCGAAGCGACC
TTCCGCCGGTCCAGTCTGTCCTTCTCGGCCTCCGCGACGCCGTGGTCCCGGGAGGTGTGG
GTCAACGCATCCAAATAACGGCTCTTCCAGAGGTGCGCTCACCAACTCGATTTGGTTGTA
CACGTGCAATTGGAATTCTGGGGTGGATGCATGCTCTTTTATGTTAACTGTAAGCCCAAC
CAATAGATTGTTCATTCGAACTACTACTTCAGTAATCCCAACACTCAGAATAATGTTGGA
TTCAGACATATATTAGATAGAAGAAGTGGAGCATGCTTGTGAAAACAAGCAGCGCCAGTA
ATTAGTCATTTTCAGCCTGTATTGGGTGAACTGATCTGAGTATCTGACCTTCTTGCCCTT
GTGTTATAGGAAAACACTGCTGAATTTCTCAGCTGGTGCCTAGTGGTGGGAAATAAAGCT
AGGGACCCAGCATCCTTGTGATAGCAATCACATCATTGGTGTTGTTTTTTCAGCTTACGC
TGAAACTAGACTGATCAAGAAGGCGACCAGCTGTCAAAATGCATAGACAGAAGAACCCAA
ACTCTGGGTGGGCTGCGTTTGATCGCAAGCAGCGCAGTGCAGATGGCAGTGGGTATGAAG
GTGATGCTGATCCATTTCCGTCTCTCTCAAATTCTGGAGCCTCTAATATTGCTAGTAGCT
CCATTACAGAAAAGAATGGGCTAAAACGAAAGCCCTTTGCTTCAGTGGTTCGCCCTTCTG
TTGATTCTGGAGCTGTTAGTACTGGATGCGGAAATAAGAATTCTGCTAATCACGTGGACA
GCGGGAATCACGGTGCAATCTCTGCACCTCTTAATAAAGTTAAGATCTTGAAAGATGCAC
ACAGTTGGGCCGACATTCACTTAATTGAGGATGTACTAGCTGCTGTGAATAATGATGTCG
GACAAGCATCTGATTTGTTGAAAGTTATGGACTCTCCTGCCTTGCAGACTGGAGAGGGCA
GAACATCTGGCCAACTGGCTGATGTGATGAATAAAACACACGGATCACCATCAGAAAGTG
CTGCAGCAGGCAAAGCAAATCCAGATAGCTCACAGTTGTTGCTGCCCCTGATGAACTTTC
CCTCTATACCCTTGCAGCCTGAATTCGAAGATATTGATGATGAATACTTCAGCTACCGGA
AAGATGCATTGAAAATGATGAGGGCTGCCACAAAGCATTCCCAGTCTGCCAGTAATGCAT
TTTTGAGAGATGACCATGCTGCTGCCAAGGAACTTTCTCTCAGAGCTCAGGAAGAGCGGG
CAGCTGCTGAAAAGCTAAATAACAAGGCAGCGGAAGAAATTTTTCGCCTTAGGAATAGCA
ATAATGACATCTGGAAGATAGACATGCATGGTCTTCATGCATCAGAGGCTGTGGCAGTAT
TGGAGAGGCATCTCCACATGATAGAGTTCCAGCAACCTGGGAATAAGTCAGCCTCATCTG
AGGACTTAGCTAAGTTGGAATCTGCATATTCTGAATCAACCACTGGTTCAAACATTGAGC
TTGCTGCTGAGAAGGTGGTCTTACGCCGGCCTAAGCAGTCTATCTTACATGTGATCACAG
GGATGGGTAACCATAGCAAAGGGCAGGCTTCACTACCTGTTGCCGTTAGGGGTTTCCTTA
TTGAGAACGGGTAACATTCGATGCAATCAATACAACTCTACGCCTAAGTGTACACAAAAG
TACGATTGACAGCCTTCTGCTTGCAGGTATCGATTTGATGAGCTGAGGCCTGGTGTTTTT
GCGGTTCGTCCAAAATTCCGCCGCAGGTGAACCTGTGGAAGTTTGTACAATTGTAACATG
GTGGTGGCTTGGGGTGATTATGTGCTCTAAATTTTACACTAAAATTTAAGGATCAAATCG
GATTAGGATCAGACTCTATTTTTATTATGAAGTAGATCCTTCGGT