Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d025461_T017
CDS Infomation

cds chromosome:B73_RefGen_v4:10:119221074:119232193:-1 gene:Zm00001d025461 gene_biotype:protein_coding transcript_biotype:protein_coding description:Regulator of nonsense transcripts UPF3
Sequence

ATGTTAATAATCTTGTTTTGTTTCGTAGATGCCACAAGTGGGGGAACATCTGGATCTGGT
CAGGTTGCTGAGTTTAAAAGGGATAAAATTGTCATATTGAAAGGAAGAGGAAGGATTGAT
TCTAATACACCTAATGGAGCAACTCAGCACTCATCAACCCCTATCAAGAATGTGCCACCA
TCGCGTTCTAGACAAGACCAGCGACTTGAAGCCAGTGGAAAAATTATTAAGACTATACTA
TCAAACAAGGAAGCCCGCAGTTCAAATCCTTCTGAACATGAGCAGGAAGGTCACATGTTT
AATACTGAGAAGGATAAGCGGCCACCACGGGCTTTCAACCCTCGTACCATTGTGAAAGAT
CAGGTAGTTGAAAATGCTGAGAGGAGCCATTTTGATGAGAAGGCTAATCATCTCCATGGC
TCCGTTCCCATTGGTGAGAAGGTTGAAAGGCATGCTAGAAACAGAGATAGACCCGATCGT
GGTGTATGGGCAGCTCGCCGCTATGACAAATCTACATCTGCAGGTAGTTCACATCCTTCG
TCGTCAGAGTTCCCTCAAATGCAGTCACATTCTGGAGATAATATTTTGCAACTAGCAGAT
GGTCATGGAGACAGAAAGACAGACACAAGGGGTCAAGGTGGTAGCCGTGGTGTTCCTGTT
GAAAATGGACATAGGCACGCCAACCGTCGTGGCCTTCCACGTGGACCAAAGGAAACTGAA
ATATCTGCAAGTGTGCCTGATGCGAAGAATTCAAAGAGGGGCTCTGCTAGCTATGGTGCT
CATGAGAGACAAGTATGGGTTCAGAAGTCAAGTTCAGGCTCGTGA

Peptide Sequence

PEP ID

Zm00001d025461_P017
PEP Infomation

pep chromosome:B73_RefGen_v4:10:119221074:119232193:-1 gene:Zm00001d025461 transcript:Zm00001d025461_T017 gene_biotype:protein_coding transcript_biotype:protein_coding description:Regulator of nonsense transcripts UPF3
Sequence

MLIILFCFVDATSGGTSGSGQVAEFKRDKIVILKGRGRIDSNTPNGATQHSSTPIKNVPP
SRSRQDQRLEASGKIIKTILSNKEARSSNPSEHEQEGHMFNTEKDKRPPRAFNPRTIVKD
QVVENAERSHFDEKANHLHGSVPIGEKVERHARNRDRPDRGVWAARRYDKSTSAGSSHPS
SSEFPQMQSHSGDNILQLADGHGDRKTDTRGQGGSRGVPVENGHRHANRRGLPRGPKETE
ISASVPDAKNSKRGSASYGAHERQVWVQKSSSGS

Transcript Sequence

Transcript ID

Zm00001d025461_T017
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:119221074:119232193:-1 gene:Zm00001d025461 gene_biotype:protein_coding transcript_biotype:protein_coding description:Regulator of nonsense transcripts UPF3
Sequence

ACCAAACTACCGAAGCGGAAGGGGGGGAAAATCCACGCGACGACGACGCGGCGAAACGAA
GGGAAGGGAAGCAGGAGCGAGACAAATCCCCACCCGGCTCCAAACCCTAGCCACCTCCCC
CGTCCTGTCCCCAGATCTCGCTGCCGTCTGACCCGCCTCGCTTCGATGTGACCCGGCCCT
AGGGTTTGAGACGTGTTGCGGTAGGGGTGTTCTCAAGGATTCACGACACGAGAGAGATTC
GGGGAGGCGTCGACGGTGCGAGCACACATGAAGGACCCGGCGCACCGCACGAAGGTGGTG
CTCCGGCGGCTGCCGCCGGCGATCGCGCAGCAGGCCGTTGTGGACCAGGTCGACTTGCGC
TTCGCTGGGCGGTACGACTGGGCGTGCTTCCGCCCCGGGAATGCCAGCCAAAAGAACCAT
AGACATTCTCGACTTTACCTTAATTTCAAGCGCCCCGAGGATGTTGTTGAGTTCGCTGAG
GTCTTCAATGGGCACGTATTTGTGAATGAAAAGGGTGCTCAGTTTAAAGCTTTCGTGGAA
TATGCACCATCACAACAGGTTCCCAAGTCAACTATCAAGAAGGATGGCCGTGAAGGAACT
ATTATGAAAGATCCGGAGTACTTGGAGTTTCTTGAGTTTATTTCAAAGCCTACTGAGCAT
CTGCCTAGTGCTGAAATTCAGCTCGAAAGGAAAGAAGCTGAAAGGGCAGCTGCTGGAAAG
GAGGCACCTGTTGTGACACCTCTTATGATGTATGTCCGCCAGCAAAGGGCAGCTAAGAGT
ATGGTTCATAGACCTGGAAGTAGACTTAGCAGAAAACTTGCAAGTGTCGTAAGCAGTTCC
AGTCCTAAAAGGTCTTCTGAGAAGCGCAGATCCTCCACGTATGTTGTACGAGACAACACT
AAGGAGAAACCAACCTATATCATGGTGCCAAAGAGAGAGGAGCATACACAAAGGGAAAAA
GATGTTGCTGGAAATTCAGGCGGTATGCTTGTACCAAATCATGAAATTGCCAATAGTAAT
ACCTTGTTTTTAAATATCTTTGCCAGTATGTCTAATATTACCAGGTGTTACTGAGTTTTT
TTTTCTAGTACTTACGATTGCCTATAATACATCTAAATGTTGTATCTAGTGATGTATGGA
CTATTGCACGCTGTCTGTTGAGGGTGGACTACGAGCCACTTGCAGTTTTTTTTCAGCTTT
CTTTGAAATTATCATAATCTTATTTATCACGATGTCGTGAATTGTTAGAGACCCAACTTC
AAACTAAAAACTCGGCCGGGGAGGGAAAGACCGCCCTCCCGGTATTATATTAAGAAGAGA
CCGAAACATGGTCCCGGCCGAGAAAATCCCCGAACCCTGGCCCCCCATCACTAGCGGGCC
ATCACCGCCCACTCTGTAACGGCCCAACCGGAGGGTGGCGCGCAGGACGTAACCCGGGAG
CGGGCGGGGCACAGCGAGGGGATTTTTTTAACCAAGCCAGAAATTCGTCCCCGAGGGGGA
TCGAACCAGGACCTGGAGGTGCTACTCAGAAGCCTTAACCATTACGCTAGAGGCCCTTTC
GCGACCCAACTTCAAACTGAGCTGAGCCGAAGCTGAAAGTCACTCAAAATCAACCCATTT
TTATTTTAAAAGGAAAAAGACCAACAGGAGCATTTTTTACACGAACGACCTGGCCAGCTG
AACGAGCTTTTTGTCCAGCCGACTCTTTGTGATCCCTTGTAATTTCACCCAGGGCACATC
ATATGGGAATAGAACCTCAAATTTCGAGTTTAGCAGCGCTGACTACGGGCATTATTGATG
TTGCTTCCTGGTGCTAGCTGCATTGTGAAATTGTGTATATATGTGAGCCTTTACCATTTA
GAGAAAAATGCTTCAGTAGTTAACTTATTTCCAAAATTAGCAGAAATATGCCGTGTTTGT
TAAGAGCTAGTGCAAAATCATCCTTTAGCATGACACATTTTTTCGTTTTTTTATTGGGTT
GCTGGCATGTTGCAGTACACTATGTAAAAATCTCGGCACTTTTGGTACTACCGATTCAAT
CTAATTATGGGAATGGTAACTACCTTTTGTATTAGATGACGTCATGTACCTTTCCTAATG
TTATGCTACCTTTTCTAATTCTGGATAAGGATGTGTTCTCTTTCATACATTTTTTTTTCC
TGAATACGATCTGTTTCTTTTCGAGAAAGGGAAGCTAATTTGCTCTTGTCTCTGTCATTT
ATGGCTGCTCATCCAATTTGTCAGCTTATTACACGTGCTGAGTGGTGTGTTTTTCTATGT
TAATAATCTTGTTTTGTTTCGTAGATGCCACAAGTGGGGGAACATCTGGATCTGGTCAGG
TTGCTGAGTTTAAAAGGGATAAAATTGTCATATTGAAAGGAAGAGGAAGGATTGATTCTA
ATACACCTAATGGAGCAACTCAGCACTCATCAACCCCTATCAAGAATGTGCCACCATCGC
GTTCTAGACAAGACCAGCGACTTGAAGCCAGTGGAAAAATTATTAAGACTATACTATCAA
ACAAGGAAGCCCGCAGTTCAAATCCTTCTGAACATGAGCAGGAAGGTCACATGTTTAATA
CTGAGAAGGATAAGCGGCCACCACGGGCTTTCAACCCTCGTACCATTGTGAAAGATCAGG
TAGTTGAAAATGCTGAGAGGAGCCATTTTGATGAGAAGGCTAATCATCTCCATGGCTCCG
TTCCCATTGGTGAGAAGGTTGAAAGGCATGCTAGAAACAGAGATAGACCCGATCGTGGTG
TATGGGCAGCTCGCCGCTATGACAAATCTACATCTGCAGGTAGTTCACATCCTTCGTCGT
CAGAGTTCCCTCAAATGCAGTCACATTCTGGAGATAATATTTTGCAACTAGCAGATGGTC
ATGGAGACAGAAAGACAGACACAAGGGGTCAAGGTGGTAGCCGTGGTGTTCCTGTTGAAA
ATGGACATAGGCACGCCAACCGTCGTGGCCTTCCACGTGGACCAAAGGAAACTGAAATAT
CTGCAAGTGTGCCTGATGCGAAGAATTCAAAGAGGGGCTCTGCTAGCTATGGTGCTCATG
AGAGACAAGTATGGGTTCAGAAGTCAAGTTCAGGCTCGTGAGTTTGTTCATTGATGGTAT
GCTGTGCTACTCTACTTTATTCATTGTCTTCAAGCCCTTCTACGGATAGCTATGACACTA
CAATAATCATTGTCAGCGCCATCAGTTGTACATTCTGCTTCTAATAATTTTGTGGAACAT
TGCTGGTGGAATAGCCAAATCCATCCCTGAAGTTTCTTCTCGAAGGTCCATTTGCTGCAA
GTTTCACTGTTGGCTTAGGCCTTAGGATCTGTTCGGTTGGGTTGTGGTTGTGAAAAAAAG
CTATTGTGGGTTGTGAGCAGTGAAAAAAGACTCTTGTGGGTTGTGAGCTATAAAAAACCA
AAAACCGTTTCACCGTTTGGTGGAAGACACTAAAAGCCACTAAAAGTTCTTCCATTCGAA
AGCCTCTAAAAACAGGCCTTGAGGTGCTTTCAATTTTGACTGCGAGAAAGCCAGCATTTG
GAGAAGGCTGCTGGCTGAATTGGGCCATTTGGTTTGGCTTTTGGGGGGCAAATGCCACAA
CCAAAAGTCAAACCAAACACACCCTTAATATAGTCCCCAGACTGACATGGAATTGCACAT
GTGTGCACCCATTAACATGAAAAAACTCGGCCGTAAGAAGAGACCGAAACATGGTCTCGG
CCGAGAAAACCTCTAAACCCTGGCTTCCCATCACTGACGAGCCGATCAACTGCCCACTCT
GCAACGACCCAGCCGGAGAGTGGCGTGCAAGATATCGATCCCCGAGAGTGGGCGGGGCAT
AGCGAGGGGATTTTTTTTAACCAAGCCCGAAATTCGCCCCTGAAGGGGATCGAACCCGGG
ACCTGGAGGGGAGCCTTAACCATTACGCTAGAGGCACCCATTAACATGATGTTAGGATGG
TCTCTGCATACATGCTACGAGTCTTTTCTACCACATAGTAAAATGATTCCTCTTATAGAT
GATACAATTTACTAAGTTGCTCTTGTTCCATGCACAATTTACTAAGTTGCTCTTGTTCCA
TGCATTCTACCAGTTTGAATCTAATCTTTACTTTCCACTTTACCCTCTGATTTGTGGTAA
CTGGATGACATACCTACTTTGTACAGAACTACAGATTTTTGTTCTTGTTAGATGGTACAA
TTTGCTAAATTGATCTTGCACCTGACAGCATACCAGGCTGCTAGTTTAATATGTTCTTTT
AGTGAAATGGCCTTTAGCCGAGTTGGTTAGGTGGTCTGAGAGTAGCACTCCTCATGTCCT
GAGTTCGACTCCCCGTGGGAGCGAATTTCAGGATGTGGTTAAAAGAATCCCCTCGTCTGT
CCCACGTTAAAGCACAAGTCTAAGGCCTGCCCTGGTCACAGTCGTTCTCACATGGTCTAC
GGTGCCACTGTGTATGGGTGGGGCGGGGGTTCGGGAATTTTCTCGACCTGCGTGAGGTCT
TCTTAATATAATGCCGTGGGTGCGGTCCCCCCCCCCCCCCCGGCCGCAAGTAGTTTTTAA
AATCTGTTCTTTTAGACTTTGCATTATCCTCCGATATGGGGCGACTATGGGACATTTGTT
CTTAGATTCTATTTGGTGCCGCTCTGGATCCGCTGACAACTTTGGTGCTGGGGCCGAAGG
AGCTCTATGAAACGCGCGTGAGAGAAGTGCTTCTGAGTGCAAACCAGAGGAGCTGGAGCC
ATTTTGAGCGTACGGATGCGGAGCCAACAAAATTGGCCTACCTGAAGGCTCCAGCTCCGA
CCACAGAGCACGGAGGAGTGCAGGCAAATGTGCCGTTGCCTGTTCAGATGGCACAACGCT
TGTAGCTTATATAAATAGGGGTTAGATGAGAGATTTCACACATATTGGCACCTTAGGCTG
ACTAGGTGCACACTTGGTGCTCCACATTACCTTGGTGACCTGATTGAGCCAAAGACAACT
TCGTGGGACTTGATTGAACCATTTAGAACCTTAGGGAAGAAAATGAGCCTGTGGTGAAAC
TTCAGGGAAGAATTTGCCCATTCTTTCAACATTGTTAATGAATGCGTTTTTTTCCATAAG
GTCCCGTTTGTTTTCTTTCATTTCGAGGAATTAGAATCTTACTAATGGAATAAGCTATTT
TTTTAAATATGACATTCCACCACTTTTCAAAGTTATCATATAAGCCTATCTCAAATTCAT
GGGGTGAGAGATGGAAATTGATTCTATAGATTTACATGCTAATTTTTCGATGTACAAGTT
ATAACACACTCTTTTACTTGCGCCTCTATAACATAAATGTACTATATAACTATCTCTCTC
ATATGATTTAGGATAATATACAAATATATTACATATATAAATATATAAACTTAATTAGTT
TTATCTAAATTATAATTATTAAAATGAAATTCAATTCCAACGAAACAAACGGGCCCTAAG
TGTTCTTGAAATATCTGGAATCTGTCACCAGTTTCCTACTAATTCAGCCAACTCTTTTGC
AGATACTCCCATCGAAACAGGTATTGCCAGTCGTGGTGAAGTCTTGGATTCTGCAGTGCA
TTCTTCTTTGTTAGCTGTTGATCCTGTGAAGTATGTTAACAAAATGTCCAACGGTCAAAT
GCTGCTATGAAGTGCAACCTCAGATTTGTCAATCGAGGTCTTGCTGCTATAGCTGAAAAG
AGAGCTTGCTGATTTGATTCACAGAAATAGTGAAGTAACATAACCCGGCATGTAGGTAGC
TCTCGACCACTTTTGGGCAAGATTTGATTCGGTCCCAAGGTTGATATTTCTGGAGCAATG
GGTGGAGATTAGTTTGGCACCAGTACCTCACTACCTCGTGACAGTGGTCACATATTTCCA
AGACCCCTGGAGGCTACACGCACCCTCGTCAGAGATGGATGTAAATATCTCTAGAGAAAG
AAGAGGTCTGGTTCTGATTGCTGTTTACAGGTTAGAGGTGCAGCGTATTTACAAAGAGAT
ATAAGAGTTATCACTTATCATCAGACTGCTTGGTTTGCTAAATAAAGGTGAATTTAGTTA
CTAGAT