Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d025461_T011
CDS Infomation	cds chromosome:B73_RefGen_v4:10:119220958:119232133:-1 gene:Zm00001d025461 gene_biotype:protein_coding transcript_biotype:protein_coding description:Regulator of nonsense transcripts UPF3
Sequence	ATGTTGTACGAGACAACACTAAGGAGAAACCAACCTATATCATGGTGCCAAAGAGAGAGG AGCATACACAAAGGGAAAAAGATGTTGCTGGAAATTCAGGCGAGGGATAAAATTGTCATA TTGAAAGGAAGAGGAAGGATTGATTCTAATACACCTAATGGAGCAACTCAGCACTCATCA ACCCCTATCAAGAATGTGCCACCATCGCGTTCTAGACAAGACCAGCGACTTGAAGCCAGT GGAAAAATTATTAAGACTATACTATCAAACAAGGAAGCCCGCAGTTCAAATCCTTCTGAA CATGAGCAGGAAGGTCACATGTTTAATACTGAGAAGGATAAGCGGCCACCACGGGCTTTC AACCCTCGTACCATTGTGAAAGATCAGGTAGTTGAAAATGCTGAGAGGAGCCATTTTGAT GAGAAGGCTAATCATCTCCATGGCTCCGTTCCCATTGGTGAGAAGGTTGAAAGGCATGCT AGAAACAGAGATAGACCCGATCGTGGTGTATGGGCAGCTCGCCGCTATGACAAATCTACA TCTGCAGGTAGTTCACATCCTTCGTCGTCAGAGTTCCCTCAAATGCAGTCACATTCTGGA GATAATATTTTGCAACTAGCAGATGGTCATGGAGACAGAAAGACAGACACAAGGGGTCAA GGTGGTAGCCGTGGTGTTCCTGTTGAAAATGGACATAGGCACGCCAACCGTCGTGGCCTT CCACGTGGACCAAAGGAAACTGAAATATCTGCAAGTGTGCCTGATGCGAAGAATTCAAAG AGGGGCTCTGCTAGCTATGGTGCTCATGAGAGACAAGTATGGGTTCAGAAGTCAAGTTCA GGCTCGTGA

Peptide Sequence

PEP ID	Zm00001d025461_P011
PEP Infomation	pep chromosome:B73_RefGen_v4:10:119220958:119232133:-1 gene:Zm00001d025461 transcript:Zm00001d025461_T011 gene_biotype:protein_coding transcript_biotype:protein_coding description:Regulator of nonsense transcripts UPF3
Sequence	MLYETTLRRNQPISWCQRERSIHKGKKMLLEIQARDKIVILKGRGRIDSNTPNGATQHSS TPIKNVPPSRSRQDQRLEASGKIIKTILSNKEARSSNPSEHEQEGHMFNTEKDKRPPRAF NPRTIVKDQVVENAERSHFDEKANHLHGSVPIGEKVERHARNRDRPDRGVWAARRYDKST SAGSSHPSSSEFPQMQSHSGDNILQLADGHGDRKTDTRGQGGSRGVPVENGHRHANRRGL PRGPKETEISASVPDAKNSKRGSASYGAHERQVWVQKSSSGS

Transcript Sequence

Transcript ID	Zm00001d025461_T011
Transcript Infomation	cdna chromosome:B73_RefGen_v4:10:119220958:119232133:-1 gene:Zm00001d025461 gene_biotype:protein_coding transcript_biotype:protein_coding description:Regulator of nonsense transcripts UPF3
Sequence	GGGAAGGGAAGCAGGAGCGAGACAAATCCCCACCCGGCTCCAAACCCTAGCCACCTCCCC CGTCCTGTCCCCAGATCTCGCTGCCGTCTGACCCGCCTCGCTTCGATGTGACCCGGCCCT AGGGTTTGAGACGTGTTGCGGTAGGGGTGTTCTCAAGGATTCACGACACGAGAGAGATTC GGGGAGGCGTCGACGGTGCGAGCACACATGAAGGACCCGGCGCACCGCACGAAGGTGGTG CTCCGGCGGCTGCCGCCGGCGATCGCGCAGCAGGCCGTTGTGGACCAGGTCGACTTGCGC TTCGCTGGGCGGTACGACTGGGCGTGCTTCCGCCCCGGGAATGCCAGCCAAAAGAACCAT AGACATTCTCGACTTTACCTTAATTTCAAGCGCCCCGAGGATGTTGTTGAGTTCGCTGAG GTCTTCAATGGGCACGTATTTGTGAATGAAAAGGGTGCTCAGTTTAAAGCTTTCGTGGAA TATGCACCATCACAACAGGTTCCCAAGTCAACTATCAAGAAGGATGGCCGTGAAGGAACT ATTATGAAAGATCCGGAGTACTTGGAGTTTCTTGAGTTTATTTCAAAGCCTACTGAGCAT CTGCCTAGTGCTGAAATTCAGCTCGAAAGGAAAGAAGCTGAAAGGGCAGCTGCTGGAAAG GAGGCACCTGTTGTGACACCTCTTATGATGTATGTCCGCCAGCAAAGGGCAGCTAAGAGT ATGGTTCATAGACCTGGAAGTAGACTTAGCAGAAAACTTGCAAGTGTCGTAAGCAGTTCC AGTCCTAAAAGGTCTTCTGAGAAGCGCAGATCCTCCACGTATGTTGTACGAGACAACACT AAGGAGAAACCAACCTATATCATGGTGCCAAAGAGAGAGGAGCATACACAAAGGGAAAAA GATGTTGCTGGAAATTCAGGCGAGGGATAAAATTGTCATATTGAAAGGAAGAGGAAGGAT TGATTCTAATACACCTAATGGAGCAACTCAGCACTCATCAACCCCTATCAAGAATGTGCC ACCATCGCGTTCTAGACAAGACCAGCGACTTGAAGCCAGTGGAAAAATTATTAAGACTAT ACTATCAAACAAGGAAGCCCGCAGTTCAAATCCTTCTGAACATGAGCAGGAAGGTCACAT GTTTAATACTGAGAAGGATAAGCGGCCACCACGGGCTTTCAACCCTCGTACCATTGTGAA AGATCAGGTAGTTGAAAATGCTGAGAGGAGCCATTTTGATGAGAAGGCTAATCATCTCCA TGGCTCCGTTCCCATTGGTGAGAAGGTTGAAAGGCATGCTAGAAACAGAGATAGACCCGA TCGTGGTGTATGGGCAGCTCGCCGCTATGACAAATCTACATCTGCAGGTAGTTCACATCC TTCGTCGTCAGAGTTCCCTCAAATGCAGTCACATTCTGGAGATAATATTTTGCAACTAGC AGATGGTCATGGAGACAGAAAGACAGACACAAGGGGTCAAGGTGGTAGCCGTGGTGTTCC TGTTGAAAATGGACATAGGCACGCCAACCGTCGTGGCCTTCCACGTGGACCAAAGGAAAC TGAAATATCTGCAAGTGTGCCTGATGCGAAGAATTCAAAGAGGGGCTCTGCTAGCTATGG TGCTCATGAGAGACAAGTATGGGTTCAGAAGTCAAGTTCAGGCTCGTGAGTTTGTTCATT GATGATACTCCCATCGAAACAGGTATTGCCAGTCGTGGTGAAGTCTTGGATTCTGCAGTG CATTCTTCTTTGTTAGCTGTTGATCCTGTGAAGTATGTTAACAAAATGTCCAACGGTCAA ATGCTGCTATGAAGTGCAACCTCAGATTTGTCAATCGAGGTCTTGCTGCTATAGCTGAAA AGAGAGCTTGCTGATTTGATTCACAGAAATAGTGAAGTAACATAACCCGGCATGTAGGTA GCTCTCGACCACTTTTGGGCAAGATTTGATTCGGTCCCAAGGTTGATATTTCTGGAGCAA TGGGTGGAGATTAGTTTGGCACCAGTACCTCACTACCTCGTGACAGTGGTCACATATTTC CAAGACCCCTGGAGGCTACACGCACCCTCGTCAGAGATGGATGTAAATATCTCTAGAGAA AGAAGAGGTCTGGTTCTGATTGCTGTTTACAGGTTAGAGGTGCAGCGTATTTACAAAGAG ATATAAGAGTTATCACTTATCATCAGACTGCTTGGTTTGCTAAATAAAGGTGAATTTAGT TACTAGATTATGAGACCCCGTGTTTTGACTGCCGCAATCGTGGTTCGCGGCAGCAGAAAG GTTACCTAGAGTCTAAAAGTGGCATCTCATTTTGGTATTATGGTTCTGACCAAATGGGAT ATGA