Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d025449_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:10:118888473:118897515:-1 gene:Zm00001d025449 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative MAPKKK family protein kinase

Sequence

ATGCCCGCGTGGTGGCCCCGCAGCAAGCTGAGGTCTAGGTCGAAGGCCAAGCCGGGCGCA
GGGTCCGTCTCCGCAGCTTCGTCCCCGCGCAAGTCCGCGGACCTCGAGTCGCCCTCCCCG
TCCCCGTCGCCGACGCCGACGCCGCGGGACAGGAAGGCGCACAGCCTCGACTTCCCCGGC
GCGGCCGCCGCGCGCGGCCGGCCAGCCGGCGCCGCGCCGGGGCATGGGTCGGTAGGGTAC
AAGCTCCCGACGCCGGTGGAGGCGGTGGAGCCTGTCGGGACTCTGTACGAGGTGGTGCTG
GCGGCGGCGGCGGCCGCCGCTGCCGGTGACGGCTGCTCGTCCGCGGAGGAGTCTAGCGTG
TGCTCGGCCGCGTCGTTGGACGAGCCGCACTACCAACATGGGTTTAGGCCCATGGATCCG
GCTGCTTTTGCGAGGGAAAGAAATATGCCTTCTGATTCAGATAGGATCTTAAATGAAGAC
AAGTGTTTCATGTCTTGTAGTATGCCACGGGAGCATCAGAAGTTCTTTGATGTTCCTGCG
GCTAGTGTTAGAGAACTTCATTTGCAAAGTGATGCACCTTCAACGAGTGAAGCCAATTGT
TCACGTGGAAGAATGATATCTGGAGATCTTTTTGCTCCAAGAACAAGGAGTCTCTCTCCT
ATCCCAAAAGGCCATGCATTCGCTGTGAGCAATGGAAATTCTAGAGAATTTGGTTTCAGC
CCGAGGTCACCAGTAAGAAAGATGGATGGTTTGAGGAGCCCACCACATCCCTTGCCTCTT
CCTCCAGCTTCTGGTGCATGCTCGCCTCTTCATCCAGCTTCTGGTGCATGCTCGCCTCTT
CATCCAGCTTCTGGTGCTTGCTCACCTCTTCTTCCAACCCACAGTTTTTGCTCGCCTCTT
CCTTCGTCTCCCAGTTCCTGCCCACCTCTTCCTGCATCTCCCACTAACTGCTCACAGTCC
CAGTCACAATGGAAGAAAGGGAAATTGCTAGGGAGTGGTACATTTGGTCAGGTTTACCTT
GGATTTAACAGTGAAAATGGGCAGTTTTGTGCGATTAAGGAGGTTCAAGTTATTATGGAT
GATCCACATTCGAAGGAACGACTCAAACAATTAAACCAGGAAATAGATATGCTTAGACAA
CTCTCCCACCCAAACATAGTGCAGTACCATGGAAGTGAGCTGAGTGATGAATCACTTTCC
ATTTGTCTTGAGTATGTTTCGGGGGGTTCAATCCACAAATTATTAAGAGAATATGGCTCT
TTTAAGGAACCTGTGATTCGTAATTACACTGGGCAAATTCTTGCTGGCCTTGCCTACTTA
CATGGGCGGAACACTGTCCACAGAGATATCAAAGGAGCAAACATACTCGTGGGTCCTAAT
GGTGAAGTCAAGCTGGCTGACTTTGGCATGGCTAAGCATATATCATCTTTTGCTGAAATA
CGTTCTTTCAAAGGAAGTCCTTACTGGATGGCTCCTGAGGTTATAATGAACTGTAAAGGC
TACAGTTTATCAGTGGACATATGGAGTCTGGGCTGTACCATTATTGAAATGGCGACGGCA
AGACCTCCTTGGCACCAATACGAGGGGGTAGCAGCAATATTTAAGATCGCAAACAGTAAA
GATATACCTGAAATCCCAGACAGTTTCTCAGAGGAAGGGAAAAGTTTCTTGCAGCTTTGC
TTGAAACGTAACCCTGCATCTCGTGCTTCTGCAGTCCAGCTGATGGATCATCCTTTTGTT
CAGGATCACCCTGCAGTGAGAGCTGCAAAATCCAGTGTATTGAGAAACACACCATCTTCT
CCAGCAGATGGCAGACACACAATGTCCAACAGGGAGTTGCCATCTCGGAAAATTATAACT
CCTCTGAAGGATATTGGACTGGGCATGAGAGATTTTACTGGATTTTCCACTACTGTTCCT
TCACCACACAGTCCTATTCCTGGAAGAGCAAACATGTCTACGCCAGTTTCACCATGCTCA
AGCCCGCTGCGGCAGTTTAAGCAATCCAATGTGAGGGGCATGCGTTCTCCACCTCATCCA
ATGCTCTCCCCTGGTCTTGGCAACACAGTAAGTTACACCCAAAATCAGACAAGACGCAAT
CCAGCTCCTGCCATTTCAGATCCTTGGATGGATGTTGGCCAGATGAAACTCCAAAGCCCC
AATATTTCCCCCAGAAGGTTCTGA

Peptide Sequence

PEP ID

Zm00001d025449_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:10:118888473:118897515:-1 gene:Zm00001d025449 transcript:Zm00001d025449_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative MAPKKK family protein kinase

Sequence

MPAWWPRSKLRSRSKAKPGAGSVSAASSPRKSADLESPSPSPSPTPTPRDRKAHSLDFPG
AAAARGRPAGAAPGHGSVGYKLPTPVEAVEPVGTLYEVVLAAAAAAAAGDGCSSAEESSV
CSAASLDEPHYQHGFRPMDPAAFARERNMPSDSDRILNEDKCFMSCSMPREHQKFFDVPA
ASVRELHLQSDAPSTSEANCSRGRMISGDLFAPRTRSLSPIPKGHAFAVSNGNSREFGFS
PRSPVRKMDGLRSPPHPLPLPPASGACSPLHPASGACSPLHPASGACSPLLPTHSFCSPL
PSSPSSCPPLPASPTNCSQSQSQWKKGKLLGSGTFGQVYLGFNSENGQFCAIKEVQVIMD
DPHSKERLKQLNQEIDMLRQLSHPNIVQYHGSELSDESLSICLEYVSGGSIHKLLREYGS
FKEPVIRNYTGQILAGLAYLHGRNTVHRDIKGANILVGPNGEVKLADFGMAKHISSFAEI
RSFKGSPYWMAPEVIMNCKGYSLSVDIWSLGCTIIEMATARPPWHQYEGVAAIFKIANSK
DIPEIPDSFSEEGKSFLQLCLKRNPASRASAVQLMDHPFVQDHPAVRAAKSSVLRNTPSS
PADGRHTMSNRELPSRKIITPLKDIGLGMRDFTGFSTTVPSPHSPIPGRANMSTPVSPCS
SPLRQFKQSNVRGMRSPPHPMLSPGLGNTVSYTQNQTRRNPAPAISDPWMDVGQMKLQSP
NISPRRF

Transcript Sequence

Transcript ID

Zm00001d025449_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:118888473:118897515:-1 gene:Zm00001d025449 gene_biotype:protein_coding transcript_biotype:protein_coding description:Putative MAPKKK family protein kinase

Sequence

GTATCTCTCTCTCCCTTCACCTAAAGCGAGGCGCCGTCGGCTTCTGCTCCTTACCTCGCG
CCTTCCTCGCGCGGCGCGCCTCGCCCTCGCCCTCTCCCTCTCCCTCTCTCCTCCCCCACC
CTTCCTCTCCCTCCATCTCTCCGCGGCAGTTCGAGCTTGGCGGGGGAACCGTACCCGGCA
AGCGCGCGGACGCCCCCCCGGGTGGGGGCGACAGCCAGCGGCGCGATGCCCGCGTGGTGG
CCCCGCAGCAAGCTGAGGTCTAGGTCGAAGGCCAAGCCGGGCGCAGGGTCCGTCTCCGCA
GCTTCGTCCCCGCGCAAGTCCGCGGACCTCGAGTCGCCCTCCCCGTCCCCGTCGCCGACG
CCGACGCCGCGGGACAGGAAGGCGCACAGCCTCGACTTCCCCGGCGCGGCCGCCGCGCGC
GGCCGGCCAGCCGGCGCCGCGCCGGGGCATGGGTCGGTAGGGTACAAGCTCCCGACGCCG
GTGGAGGCGGTGGAGCCTGTCGGGACTCTGTACGAGGTGGTGCTGGCGGCGGCGGCGGCC
GCCGCTGCCGGTGACGGCTGCTCGTCCGCGGAGGAGTCTAGCGTGTGCTCGGCCGCGTCG
TTGGACGAGCCGCACTACCAACATGGGTTTAGGCCCATGGATCCGGCTGCTTTTGCGAGG
GAAAGAAATATGCCTTCTGATTCAGATAGGATCTTAAATGAAGACAAGTGTTTCATGTCT
TGTAGTATGCCACGGGAGCATCAGAAGTTCTTTGATGTTCCTGCGGCTAGTGTTAGAGAA
CTTCATTTGCAAAGTGATGCACCTTCAACGAGTGAAGCCAATTGTTCACGTGGAAGAATG
ATATCTGGAGATCTTTTTGCTCCAAGAACAAGGAGTCTCTCTCCTATCCCAAAAGGCCAT
GCATTCGCTGTGAGCAATGGAAATTCTAGAGAATTTGGTTTCAGCCCGAGGTCACCAGTA
AGAAAGATGGATGGTTTGAGGAGCCCACCACATCCCTTGCCTCTTCCTCCAGCTTCTGGT
GCATGCTCGCCTCTTCATCCAGCTTCTGGTGCATGCTCGCCTCTTCATCCAGCTTCTGGT
GCTTGCTCACCTCTTCTTCCAACCCACAGTTTTTGCTCGCCTCTTCCTTCGTCTCCCAGT
TCCTGCCCACCTCTTCCTGCATCTCCCACTAACTGCTCACAGTCCCAGTCACAATGGAAG
AAAGGGAAATTGCTAGGGAGTGGTACATTTGGTCAGGTTTACCTTGGATTTAACAGTGAA
AATGGGCAGTTTTGTGCGATTAAGGAGGTTCAAGTTATTATGGATGATCCACATTCGAAG
GAACGACTCAAACAATTAAACCAGGAAATAGATATGCTTAGACAACTCTCCCACCCAAAC
ATAGTGCAGTACCATGGAAGTGAGCTGAGTGATGAATCACTTTCCATTTGTCTTGAGTAT
GTTTCGGGGGGTTCAATCCACAAATTATTAAGAGAATATGGCTCTTTTAAGGAACCTGTG
ATTCGTAATTACACTGGGCAAATTCTTGCTGGCCTTGCCTACTTACATGGGCGGAACACT
GTCCACAGAGATATCAAAGGAGCAAACATACTCGTGGGTCCTAATGGTGAAGTCAAGCTG
GCTGACTTTGGCATGGCTAAGCATATATCATCTTTTGCTGAAATACGTTCTTTCAAAGGA
AGTCCTTACTGGATGGCTCCTGAGGTTATAATGAACTGTAAAGGCTACAGTTTATCAGTG
GACATATGGAGTCTGGGCTGTACCATTATTGAAATGGCGACGGCAAGACCTCCTTGGCAC
CAATACGAGGGGGTAGCAGCAATATTTAAGATCGCAAACAGTAAAGATATACCTGAAATC
CCAGACAGTTTCTCAGAGGAAGGGAAAAGTTTCTTGCAGCTTTGCTTGAAACGTAACCCT
GCATCTCGTGCTTCTGCAGTCCAGCTGATGGATCATCCTTTTGTTCAGGATCACCCTGCA
GTGAGAGCTGCAAAATCCAGTGTATTGAGAAACACACCATCTTCTCCAGCAGATGGCAGA
CACACAATGTCCAACAGGGAGTTGCCATCTCGGAAAATTATAACTCCTCTGAAGGATATT
GGACTGGGCATGAGAGATTTTACTGGATTTTCCACTACTGTTCCTTCACCACACAGTCCT
ATTCCTGGAAGAGCAAACATGTCTACGCCAGTTTCACCATGCTCAAGCCCGCTGCGGCAG
TTTAAGCAATCCAATGTGAGGGGCATGCGTTCTCCACCTCATCCAATGCTCTCCCCTGGT
CTTGGCAACACAGTAAGTTACACCCAAAATCAGACAAGACGCAATCCAGCTCCTGCCATT
TCAGATCCTTGGATGGATGTTGGCCAGATGAAACTCCAAAGCCCCAATATTTCCCCCAGA
AGGTTCTGAGAACGATTTAAATATAAAAAAAGAGAATCATGGGCGCAATATATCCATGAC
AAGTTAGTTATTAAGAGATGTTCAGTAAGGAACTTGTTTGTGTAGTTACTACAATACGAC
ACTCACCAGAGATTCAGTACAGCGAAATGGGGCTCTTGAGAATTTGTAACAGGAAGTTCT
GTATATCCTTAGGTTTTAAGGTTTGTTGTCGCCCTTGCTATATGTAGTTATACGTGTACA
CGTCCTGATGTAAAGGTTCACAAAAAATCTTACAGATGACCACGGGATGTAAATTCGAAA
GTTTGTGCAAACTGGTATTTCTGTGTAGTAGTTAGGACTTCCATGG