Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d025398_T011
CDS Infomation

cds chromosome:B73_RefGen_v4:10:116998410:117004339:1 gene:Zm00001d025398 gene_biotype:protein_coding transcript_biotype:protein_coding description:Exocyst complex component SEC5A
Sequence

ATGGAAGTTTTGCAAAATAAAATTCGCGAAAAAGTGCTCTCTGATTCGAAGTGGAGGCAG
CTGCAACAAGATTCAAATAAATCTCTGGAAGTTGATTCTACCATTGGTGATTCTCCTCGA
GTTGATCAGTTGTCAACAAACTTTATGGCTGAGGAAGCTGATAGTTTAAGGGCCACCTAC
ATTCGTAGGCTAACTTCTGTACTGATCCAGCATGTTCCAGCTTTCTGGAGATTAGCTTTA
TCTGTTTTCAGTGGAAAATTTGCCAAGGCAGCTTCTGGTAACGTAGTTTCTGATTTTGAT
GTGAATGCAAAGCCGACTGCAAATAAGAATGATGAAAAAGGTGGAGAAGTAAAGTACACA
AACCACACTCTTGATGAAGTTGGTAGTATGGTTCAGGCTACTATATCGGCTTTTGACACT
AAGGTTCAGAGTACCTTCCGTGATTTTGAGGAATGCAACATTCTTTGTCCATACATGAGT
GACACTATAAAAGAAATAGCTAAGGCCTGTCAGACTCTTGAAGGGAAGGATTCGTCTCCA
ACTGCTGTAAAAATGTTGCGCACACTTCATTTTGAAATGACAAAGCTTTACATTCTACGG
CTTTGTTCATGGATGCGGGCAACAACAAAGGAGATATCAAAAGATGAGACTTGGGTTACT
TTATCCACCCTTGAGAGAAACAAGTCCCAGTATGCGATTTCATGCTTGCCCCTGGAGTTC
CGTGACATAACAGTTTCAGCTATGGACCGAATTGATACTATGATTCTTAATCTGATGAGC
GAGACTGCGAAGTCATATGACATTTCTCAACCACTTCAGGAAATCAATGAGTCTGTTAGA
CTTGCATTTTTGAATTCCTTTCTGGACTTTGCTGGTTATCTGGAGAGGTTTGGAGGTGAA
CTAACCGAGAACAGACCAAACAAAGAAAACAATTATGTCTCAAATGGATACATAAATGGT
ACTAGAGAAACATTTGTTAACACAGATGGAGATTTGCACAAAAAGCTGCTGGTTGTTTTG
AGTAACATTGGGTATTGTAAAGCTGAACTTTCAGAAGAACTTTACAGCAAATATAGACAC
ATTTGGTCTCCAGTCAGGAATAATGAGGAGCGAAGTTCTGACATGCGAGACCTGAGGACT
TCTTTCTCTGCACTTGAAGAGAAAGTCCTGGACCAATATACTTTTGCAAAGTCAAACTTG
ATCAGAAGTGCTGCACAAAGTTATCTTTTGGATTCTGGGATTTATTGGGGAGCAGCGCCA
ATGGTAAAGGGCATTCGAGATGCAACTCTTGACTTACTGCACATCCTTGTAGCAGTACAT
GCAGAGGTATACTCTGGCGCTCGGCCTCTGTTGGAGAAGACAATGAAAATTTTGGTTGAG
GGTTTGGTCGACATCTTTCTTAGTGTTTTTCATGAGAATAAGACCAAAGATATTAGATTG
TTGGATGCGAATGGTTTTTGTCAACTGATGCTTGAGCTTGAGTATTTTGAGACTGTACTG
CACACGTACTTCTCACCTGAGGCGCAACAGGCTATGAAATCTTTACAAGAGAATTTGTTG
GAAAAGGCCTGTGAAAGTGTTGCAGAAGCCATGGAAAATCCTGGACACCAACGTCGACCA
ACCCGTGGCAGTGAAGATACAGCATCGGATGACAGACAGCCATCAGTATCACCTGATGAT
TTGCTTGTGCTTGCTCAGCAGTGCAGTAGTGATCTGCTGCAAGGGGAGTTGGAGAGGACT
CGATTGAACATAGCCTGTTTCATGGAGTCGACCCTTCAACCAACAGCTGCGCCAGCAGGC
CCAAAGCCTGCCGCACATTCTTCTTACCAAGCACAGCATGCTCCCGTCCAAACGTCCTCG
CCTAGTTTTAGAAGGCAGCAGACTGGTACAAGTTCCCCTGTAGTCTCCAGGCGGCGCCGG
TGA

Peptide Sequence

PEP ID

Zm00001d025398_P011
PEP Infomation

pep chromosome:B73_RefGen_v4:10:116998410:117004339:1 gene:Zm00001d025398 transcript:Zm00001d025398_T011 gene_biotype:protein_coding transcript_biotype:protein_coding description:Exocyst complex component SEC5A
Sequence

MEVLQNKIREKVLSDSKWRQLQQDSNKSLEVDSTIGDSPRVDQLSTNFMAEEADSLRATY
IRRLTSVLIQHVPAFWRLALSVFSGKFAKAASGNVVSDFDVNAKPTANKNDEKGGEVKYT
NHTLDEVGSMVQATISAFDTKVQSTFRDFEECNILCPYMSDTIKEIAKACQTLEGKDSSP
TAVKMLRTLHFEMTKLYILRLCSWMRATTKEISKDETWVTLSTLERNKSQYAISCLPLEF
RDITVSAMDRIDTMILNLMSETAKSYDISQPLQEINESVRLAFLNSFLDFAGYLERFGGE
LTENRPNKENNYVSNGYINGTRETFVNTDGDLHKKLLVVLSNIGYCKAELSEELYSKYRH
IWSPVRNNEERSSDMRDLRTSFSALEEKVLDQYTFAKSNLIRSAAQSYLLDSGIYWGAAP
MVKGIRDATLDLLHILVAVHAEVYSGARPLLEKTMKILVEGLVDIFLSVFHENKTKDIRL
LDANGFCQLMLELEYFETVLHTYFSPEAQQAMKSLQENLLEKACESVAEAMENPGHQRRP
TRGSEDTASDDRQPSVSPDDLLVLAQQCSSDLLQGELERTRLNIACFMESTLQPTAAPAG
PKPAAHSSYQAQHAPVQTSSPSFRRQQTGTSSPVVSRRRR

Transcript Sequence

Transcript ID

Zm00001d025398_T011
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:116998410:117004339:1 gene:Zm00001d025398 gene_biotype:protein_coding transcript_biotype:protein_coding description:Exocyst complex component SEC5A
Sequence

ATATTTCCTATCAGAATAGCAGGATTCATGGATTGTTTGAAAAGTGTACTCAAGATCATG
ACTCGAGAATGGAAGTTTTGCAAAATAAAATTCGCGAAAAAGTGCTCTCTGATTCGAAGT
GGAGGCAGCTGCAACAAGATTCAAATAAATCTCTGGAAGTTGATTCTACCATTGGTGATT
CTCCTCGAGTTGATCAGTTGTCAACAAACTTTATGGCTGAGGAAGCTGATAGTTTAAGGG
CCACCTACATTCGTAGGCTAACTTCTGTACTGATCCAGCATGTTCCAGCTTTCTGGAGAT
TAGCTTTATCTGTTTTCAGTGGAAAATTTGCCAAGGCAGCTTCTGGTAACGTAGTTTCTG
ATTTTGATGTGAATGCAAAGCCGACTGCAAATAAGAATGATGAAAAAGGTGGAGAAGTAA
AGTACACAAACCACACTCTTGATGAAGTTGGTAGTATGGTTCAGGCTACTATATCGGCTT
TTGACACTAAGGTTCAGAGTACCTTCCGTGATTTTGAGGAATGCAACATTCTTTGTCCAT
ACATGAGTGACACTATAAAAGAAATAGCTAAGGCCTGTCAGACTCTTGAAGGGAAGGATT
CGTCTCCAACTGCTGTAAAAATGTTGCGCACACTTCATTTTGAAATGACAAAGCTTTACA
TTCTACGGCTTTGTTCATGGATGCGGGCAACAACAAAGGAGATATCAAAAGATGAGACTT
GGGTTACTTTATCCACCCTTGAGAGAAACAAGTCCCAGTATGCGATTTCATGCTTGCCCC
TGGAGTTCCGTGACATAACAGTTTCAGCTATGGACCGAATTGATACTATGATTCTTAATC
TGATGAGCGAGACTGCGAAGTCATATGACATTTCTCAACCACTTCAGGAAATCAATGAGT
CTGTTAGACTTGCATTTTTGAATTCCTTTCTGGACTTTGCTGGTTATCTGGAGAGGTTTG
GAGGTGAACTAACCGAGAACAGACCAAACAAAGAAAACAATTATGTCTCAAATGGATACA
TAAATGGTACTAGAGAAACATTTGTTAACACAGATGGAGATTTGCACAAAAAGCTGCTGG
TTGTTTTGAGTAACATTGGGTATTGTAAAGCTGAACTTTCAGAAGAACTTTACAGCAAAT
ATAGACACATTTGGTCTCCAGTCAGGAATAATGAGGAGCGAAGTTCTGACATGCGAGACC
TGAGGACTTCTTTCTCTGCACTTGAAGAGAAAGTCCTGGACCAATATACTTTTGCAAAGT
CAAACTTGATCAGAAGTGCTGCACAAAGTTATCTTTTGGATTCTGGGATTTATTGGGGAG
CAGCGCCAATGGTAAAGGGCATTCGAGATGCAACTCTTGACTTACTGCACATCCTTGTAG
CAGTACATGCAGAGGTATACTCTGGCGCTCGGCCTCTGTTGGAGAAGACAATGAAAATTT
TGGTTGAGGGTTTGGTCGACATCTTTCTTAGTGTTTTTCATGAGAATAAGACCAAAGATA
TTAGATTGTTGGATGCGAATGGTTTTTGTCAACTGATGCTTGAGCTTGAGTATTTTGAGA
CTGTACTGCACACGTACTTCTCACCTGAGGCGCAACAGGCTATGAAATCTTTACAAGAGA
ATTTGTTGGAAAAGGCCTGTGAAAGTGTTGCAGAAGCCATGGAAAATCCTGGACACCAAC
GTCGACCAACCCGTGGCAGTGAAGATACAGCATCGGATGACAGACAGCCATCAGTATCAC
CTGATGATTTGCTTGTGCTTGCTCAGCAGTGCAGTAGTGATCTGCTGCAAGGGGAGTTGG
AGAGGACTCGATTGAACATAGCCTGTTTCATGGAGTCGACCCTTCAACCAACAGCTGCGC
CAGCAGGCCCAAAGCCTGCCGCACATTCTTCTTACCAAGCACAGCATGCTCCCGTCCAAA
CGTCCTCGCCTAGTTTTAGAAGGCAGCAGACTGGTACAAGTTCCCCTGTAGTCTCCAGGC
GGCGCCGGTGAGCTTAGTGCATCTTTCCATCATTGGCGTAGCCTCTTCCCGGAGTTTCCT
TCCTTTTCCCCCCTCACATGTGTGCTTTTTTTAATCACTTGTAATTGTCATCCTGTTGTC
ATGTGTTACGAATTTCGATCCATTCTTTTGGTGTTGTATAAGATGAAAAGGAGGAGTACA
GTACTGGTGCTGCTGCACGGGATCATGGAATTGTATAATATCGACGAGTCAAATATTATT