Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d025305_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:10:113480669:113484076:-1 gene:Zm00001d025305 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:calnexin homolog2 description: calnexin homolog2
Sequence

ATGATGGGAGGGCGCGCTCTGCTGCTGCTCCTGGTCTCGGCGCTGCTCGTTCAGATCCGC
GCCTCTGACCCGCTGCTGTACGAGCCGTTCGATGAGGACTTCGAGGGAAGATGGATCGTC
TCCAAGAAGGATGAATACCAAGGTGTATGGAAGCATGCCAAGAGTGATGGGCATGAGGAC
TATGGTCTCCTTGTTAGTGACAAAGCAAGGAAATACGCCATAATCAAGGAGCTTGATGAG
CCAGTTACCTTAAATGATGGGACAGTGGTCCTGCAGTTTGAAGTGAGACTTCAGAATGGC
CTTGAATGTGGAGGTGCCTACATTAAGTACATCCGCCCTCAGGATGCTGGATGGGATGCC
AAGGAGTTTGATAATGAGACTCCATACACTATTATGTTTGGTCCAGATAAATGTGGGTCA
ACCAACAAGGTTCATTTCATCCTTAAGCACAAGAATCCTAAGACTGGAAAGTATGTTGAG
CATCACCTCAAATTCCCACCTTCTGTCCCATACGACAAGCTCTCTCATGTCTACACAGCT
ATCTTGAAGCCAGACAATGAGGTCAGAATTTTGATCGATGGGGAAGAAAAGAAGAAGGCA
AACTTCCTTTCTGCTGATGACTTTGAGCCAGCACTTATCCCATCCAAGACCATTCCTGAC
CCTGATGACAAGAAGCCGGAGGACTGGGATGAGAGAGCTAAAATCCCTGATCCAGATGCA
GTGAAGCCTGATGATTGGGATGAGGATGCCCCCATGGAAATTGTGGATGAGGAAGCCACC
AAGCCTGAGGGATGGTTGGATGATGAACCCGAGGAGATTGATGATCCTGAGGCAGCCAAG
CCCGAGGACTGGGACGATGAAGAGGATGGTGAATGGGAGGCACCAAAGATTGACAACCCC
AAGTGTGAAGAGGCACCTGGATGTGGCGAGTGGAAGAGGCCGATGAAGCAGAATCCTGCT
TACAAAGGCAAGTGGCATGCACCTATGATTGACAACCCCAACTACAAGGGAATCTGGAAG
CCTCAGGAGATACCCAACCCTGAGTACTTTGAGCTTGACAGGCCTGATTTTGATCCAATT
GCTGCTATTGGGATTGAGATCTGGACAATGCAGGATGGCATCCTGTTCGACAATATCTTG
ATTGCTGATGATGAGAAAGTTGCCACCTCCATTCTGGAGAAGACATGGAAGCCCAAGTAT
GATGTTGAGAAGGAAAAGGAGAAGGCTGAGGAGGCTGCTGCTGGTGCAGATGGTCTTTCT
GACTTCCAGAAGAAGATTTTTGACGTCCTGTACAAGATTGCTGATATTCCGTTCTTGGCA
CCCTACAAGACCAAGATTATTGATGTTATCGAGAAGGGAGAGAAGCAGCCCAACATCACT
ATTGGCATTTTGGTCTCCGTTGTCATCGTGTTCGTTACCGTTCTCTTCAAGATCCTTTTT
GGTGGCAAGAAGCCGGTGGCACCTGTGAAACCTGCAGCTGAGGCGAAGAAGCCCAAGGCC
GCGGAGACGGACGGTGCTGGAAGCAGTGGTGACAAGGATGAGAAAGAGGATGAAAAGGAC
GAGACAGGCCCACGTCGGAGGACCCGAAGGGAGACATAG

Peptide Sequence

PEP ID

Zm00001d025305_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:10:113480669:113484076:-1 gene:Zm00001d025305 transcript:Zm00001d025305_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:calnexin homolog2 description: calnexin homolog2
Sequence

MMGGRALLLLLVSALLVQIRASDPLLYEPFDEDFEGRWIVSKKDEYQGVWKHAKSDGHED
YGLLVSDKARKYAIIKELDEPVTLNDGTVVLQFEVRLQNGLECGGAYIKYIRPQDAGWDA
KEFDNETPYTIMFGPDKCGSTNKVHFILKHKNPKTGKYVEHHLKFPPSVPYDKLSHVYTA
ILKPDNEVRILIDGEEKKKANFLSADDFEPALIPSKTIPDPDDKKPEDWDERAKIPDPDA
VKPDDWDEDAPMEIVDEEATKPEGWLDDEPEEIDDPEAAKPEDWDDEEDGEWEAPKIDNP
KCEEAPGCGEWKRPMKQNPAYKGKWHAPMIDNPNYKGIWKPQEIPNPEYFELDRPDFDPI
AAIGIEIWTMQDGILFDNILIADDEKVATSILEKTWKPKYDVEKEKEKAEEAAAGADGLS
DFQKKIFDVLYKIADIPFLAPYKTKIIDVIEKGEKQPNITIGILVSVVIVFVTVLFKILF
GGKKPVAPVKPAAEAKKPKAAETDGAGSSGDKDEKEDEKDETGPRRRTRRET

Transcript Sequence

Transcript ID

Zm00001d025305_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:113480669:113484076:-1 gene:Zm00001d025305 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:calnexin homolog2 description: calnexin homolog2
Sequence

CTCCACTGCGCCCACTTCTTATACTCCCACCTTCTGCTCCCTCTCACGGACGCTTCGCTC
TAGTCGGAAGGTTTCGAGGAACTCCCGGGCTCGAGGAGATCGGGACGATGATGGGAGGGC
GCGCTCTGCTGCTGCTCCTGGTCTCGGCGCTGCTCGTTCAGATCCGCGCCTCTGACCCGC
TGCTGTACGAGCCGTTCGATGAGGACTTCGAGGGAAGATGGATCGTCTCCAAGAAGGATG
AATACCAAGGTGTATGGAAGCATGCCAAGAGTGATGGGCATGAGGACTATGGTCTCCTTG
TTAGTGACAAAGCAAGGAAATACGCCATAATCAAGGAGCTTGATGAGCCAGTTACCTTAA
ATGATGGGACAGTGGTCCTGCAGTTTGAAGTGAGACTTCAGAATGGCCTTGAATGTGGAG
GTGCCTACATTAAGTACATCCGCCCTCAGGATGCTGGATGGGATGCCAAGGAGTTTGATA
ATGAGACTCCATACACTATTATGTTTGGTCCAGATAAATGTGGGTCAACCAACAAGGTTC
ATTTCATCCTTAAGCACAAGAATCCTAAGACTGGAAAGTATGTTGAGCATCACCTCAAAT
TCCCACCTTCTGTCCCATACGACAAGCTCTCTCATGTCTACACAGCTATCTTGAAGCCAG
ACAATGAGGTCAGAATTTTGATCGATGGGGAAGAAAAGAAGAAGGCAAACTTCCTTTCTG
CTGATGACTTTGAGCCAGCACTTATCCCATCCAAGACCATTCCTGACCCTGATGACAAGA
AGCCGGAGGACTGGGATGAGAGAGCTAAAATCCCTGATCCAGATGCAGTGAAGCCTGATG
ATTGGGATGAGGATGCCCCCATGGAAATTGTGGATGAGGAAGCCACCAAGCCTGAGGGAT
GGTTGGATGATGAACCCGAGGAGATTGATGATCCTGAGGCAGCCAAGCCCGAGGACTGGG
ACGATGAAGAGGATGGTGAATGGGAGGCACCAAAGATTGACAACCCCAAGTGTGAAGAGG
CACCTGGATGTGGCGAGTGGAAGAGGCCGATGAAGCAGAATCCTGCTTACAAAGGCAAGT
GGCATGCACCTATGATTGACAACCCCAACTACAAGGGAATCTGGAAGCCTCAGGAGATAC
CCAACCCTGAGTACTTTGAGCTTGACAGGCCTGATTTTGATCCAATTGCTGCTATTGGGA
TTGAGATCTGGACAATGCAGGATGGCATCCTGTTCGACAATATCTTGATTGCTGATGATG
AGAAAGTTGCCACCTCCATTCTGGAGAAGACATGGAAGCCCAAGTATGATGTTGAGAAGG
AAAAGGAGAAGGCTGAGGAGGCTGCTGCTGGTGCAGATGGTCTTTCTGACTTCCAGAAGA
AGATTTTTGACGTCCTGTACAAGATTGCTGATATTCCGTTCTTGGCACCCTACAAGACCA
AGATTATTGATGTTATCGAGAAGGGAGAGAAGCAGCCCAACATCACTATTGGCATTTTGG
TCTCCGTTGTCATCGTGTTCGTTACCGTTCTCTTCAAGATCCTTTTTGGTGGCAAGAAGC
CGGTGGCACCTGTGAAACCTGCAGCTGAGGCGAAGAAGCCCAAGGCCGCGGAGACGGACG
GTGCTGGAAGCAGTGGTGACAAGGATGAGAAAGAGGATGAAAAGGACGAGACAGGCCCAC
GTCGGAGGACCCGAAGGGAGACATAGACCTGTTTTTGACGTGTTTTAGCTCTTCTGGCGT
CTGCTTATTTTGAGAACTCTTAATATTTGTGAGTGTATAATAGGAGCTTATGTCACCTCT
GCGGCTTCCCCCGCTGCTGATTTGTTTTTAATGGTTAGACCAGGACCCTTCACGAGCGTA
GAATTTAGTTCTTGTTGGTCATTTATGTGCTGTGCCTGACGGTGTTCAATCAGATAGAGG
TGATGGTTTTTTTGGTAGATCAAATCAAGGAATATTTCATATGCCTTTTTGGCAACTGTT
TCAGTTGGGTGAATGCCTGGTTAAGCTTTCGCTTGTGTTT