Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d025263_T005
CDS Infomation	cds chromosome:B73_RefGen_v4:10:111734240:111744549:1 gene:Zm00001d025263 gene_biotype:protein_coding transcript_biotype:protein_coding description:hydroxyproline-rich glycoprotein family protein
Sequence	ATGCAGGAAATGAAAGACCAATGTGATCAAAAAAGAGTGGAATATGAAGCCATGCGAGCA GCCTATGGGGAGAAAGGAGGGCGATTGAGGCACCTAAAAAATGAATCATTCTCATTGGGA CAACTGCAAACTTCATTTCTTGAGTACCAAGAGGAGGCGGCATTGTTTATTTTTCGCTTG AAATCACTAAAGCAAGGTCAATTTTTAAGTATTTTGACACAGGCTGCTCGTCATCATGCT TCTCAGTTGAGTTTTTTCAGGAAAGGGCTGAAGCATCTAGAGGCTTTGGAGCCTTGTGTC AAAGCAGTTGCTGAGAAGCAGCACATTGACTACCACTTCAGTGGACTGGATAATAACAGT GATATTGATGATTACAGCTCTTACCAGGATAATCATAGTGATGGCAGTGAGTTAAGTTTT AACTATGAGATAAATGACAGGGACAAGGACCTCCCCACTTTCAGAAGTCCAATGGATATG GATCAAGCTCATCCAGTGAGTTCCCCAAGACCTCTGAAGGAACAGGAGCAGGAAAATGCT GAAGAAATAAAGGCGACTTTAGGAGTTCCTCATATGAAGCCTGAGATTGGTACCCAATCA GCACCAATTTTTGCTGAGAATGTTCCTGATCCATCTATGAGATTCCGGAAAATGAACTTG TTAACCAGAACTGTTCACTCCTACAAACTCCCAACGCCAGCTGATGACAAGAACCCTGCT TCAGTAATTGCCAACAAATCGCCTCATTCAGATCAACCCGAGAGTAAATCTCACGTGGCA GTAAATTTGTGGCATTCCTCTCCACTGGCTAAAGATTTTATGCCGAATTCCATGCACAGT GGACCTGTTAAGATGCCATCAAGTAACGAAGGGGTATCACTAGCTTATTCCTACTCCACG ACAGATTTTAAGAAAGTGAAGAGGGAAGCTTTTTCTGGCCCAATCCCAAGCAAGGTAGGA TTGAGCACCCCCCTGATTTCTGCGACTGATCGCAAACCGTCAGGGAAGCGGCCTTCCTAT GTGTTGCCAACAAGGCCTCCTGGCCCAGGTTGGCAGTCATCTGTGCCTCCAAAAGCTACG CCCAGGGTGACCTCGCTCCCAACAACGACTCCCAGGATAAGCGAGCTGCATGAGCTGCCC CGGCCTCCAGCAAATGCTGGTTTGGTTGGATATTCTGGCCCTCTGGTTTCAAGGCGGCCG ATGCCTACTGCTGTATCCACCACCCGTGTCTCACCCCCATCACATACGGCGTCGCCACTC CCACGACCACCTGCTGCCATGACTCGTAGCTACTCCATACCTTCAAACAGTCAACGGACT CCTATTATTACCGTGAACAAATTGTTGGAGGCTAGGCATAGCAGGGAGAGTAGCGAAGTT TCCTCCCCCCCAGTAACACCTATATCACTGGCAGACGTTTCCCGCAGACCAACAACAGAA GCAGCTGTTTGA

Peptide Sequence

PEP ID	Zm00001d025263_P005
PEP Infomation	pep chromosome:B73_RefGen_v4:10:111734240:111744549:1 gene:Zm00001d025263 transcript:Zm00001d025263_T005 gene_biotype:protein_coding transcript_biotype:protein_coding description:hydroxyproline-rich glycoprotein family protein
Sequence	MQEMKDQCDQKRVEYEAMRAAYGEKGGRLRHLKNESFSLGQLQTSFLEYQEEAALFIFRL KSLKQGQFLSILTQAARHHASQLSFFRKGLKHLEALEPCVKAVAEKQHIDYHFSGLDNNS DIDDYSSYQDNHSDGSELSFNYEINDRDKDLPTFRSPMDMDQAHPVSSPRPLKEQEQENA EEIKATLGVPHMKPEIGTQSAPIFAENVPDPSMRFRKMNLLTRTVHSYKLPTPADDKNPA SVIANKSPHSDQPESKSHVAVNLWHSSPLAKDFMPNSMHSGPVKMPSSNEGVSLAYSYST TDFKKVKREAFSGPIPSKVGLSTPLISATDRKPSGKRPSYVLPTRPPGPGWQSSVPPKAT PRVTSLPTTTPRISELHELPRPPANAGLVGYSGPLVSRRPMPTAVSTTRVSPPSHTASPL PRPPAAMTRSYSIPSNSQRTPIITVNKLLEARHSRESSEVSSPPVTPISLADVSRRPTTE AAV

Transcript Sequence

Transcript ID	Zm00001d025263_T005
Transcript Infomation	cdna chromosome:B73_RefGen_v4:10:111734240:111744549:1 gene:Zm00001d025263 gene_biotype:protein_coding transcript_biotype:protein_coding description:hydroxyproline-rich glycoprotein family protein
Sequence	CTCCACATCAGTTTTGGTCCCAAATTCAGCCTGAGAGCTGCAGCAGCGAAGAGCCGAAGA AAGCCAGCCTCGCCTTCCCCCTCTCCCCATACTAATCATCATCAAGGGCCTGCGATTCCA AGTTGCGTTTCCTGTCTGGGGATTCAGGGTGGAAGGAGATGAAATCGCCATTGCGCAGGT TCCGGGGCTTCGCCCTTCATCACCACCACCACCACAGGGAGAGGAAGGACCACCGCCCGC CGTCCGCCAAGCTCGACGAGCTCGTCTACGCCGCCCAGGAAATGGAAGATATGAGGAACT GTTACGATAGCTTGCTTTCAGCTGCAGCCGCAACGACAAATAGTGTATATGAGTTTGCGG AAGCCATGGGTGAAATGGGAACTTGCTTGCTTGAAAAAGCTGCATTGAATTATGATGATG ATGAAAGTGGTAAAGTGCTGATGAAGCTAGGGAAGGCCCAATTTGAACTACAAAAGTTTG TGGATGACTATGTAAAGTCCTTTTACACTGTTGTAAAATTCTATCACAACATATTCTTCA ATCCATCATACTATTTAATGTATGATCTGTATGTTTACTAGTATTTTTTTCCTTTCTTTA TAGCGTACAAATATTATAAATACAATCACAAATCCATCAGAGTCCCTTCTGAAAGAGCTA CAAGTCGTAGAGGTTAGATCTCCCTGCTTATGCTTTTCTCAACTTCATGCATTTGTGAGC TCACCTTCAAATATTGTCACTTTGCTATTTTATTGTTCATATTGCATTTATCATCCAAAT AAAAGAAAAAAATAGAACTCCTTCCTGGGTCAGCAATACAAGCGCCGCCATAGGTCCAGG GGTCAGTTAGAGTCGTCGCCACAAGTCCAGGAGTTAGTTAGATCTAACCCCTTATTATTA GGATCAGATAATCTTATCAGTTAGTTGGAGGGTAAACAGCCGCACCTGTGCTATAAGGGC GCGGGTAGTTTGTATTAGGTTTTCCTTATAAAGAAAAGAGTTTTCGGTCGTGGGAACTCC TTGGTCACCGTGGCTGATCACGCAGATTATGAAGGTGCCGGTGGAGTTACAAATGAGTTC AGCTTTTCACCCCCAATACAACAGCAGTCCGAAGTGGTTAAAAGGGTCATCACAATGTAT TTGCGATGCTTAGCTGGCGATCGGCCAAAATCTTGGCTTCAGTGGCTACCTTGGACAGAG TTTTGTTATAATTCATCATACCAAACATCACTCAAGTGCTCACCATTCCAAGTTGTGTAT GGCCGACCACCACCGACCTTGCAATCTTATTACTCAGGATCCGCTAAAGTTGCTGCAGTT GACCAGCAGCTGATAGACAGGGATGTCTTCTTGAGTGAAATCAGAGAGCGACTTGTTCAG GCTCAGGTGACAATGAAGGCATACTAGGACCGAACTCGGCAGGATGTCCATTTCAGCGTG GGTGATTGGGTTTGGTTGAAATTACAGCAGCGTTAAGCTGTGGGTGTCACTACTGCAGCA CCATCCAAGCTTGGTCCTCGGTATTATGATCCATATCAGATTATTAGCAGGGTGGGAGAA GTGTCTTACAAGCTACAGCTACCTCCACAAACCCGGATCCATGACGTTTTCCATGTTTCC TTGCTCAAGAAGTTTGAAGGTGCTCTGCCAACGGAGGTGATGCCCTTGCCAGACCTGTTT CATGGGCGCGTGGTGCCATCACCAGAGAAGGTGCTGCGGGCAAGATTGATCAGAGGTGTT TCGGAAGTTCTTGTCAAATGGCTTGGAAGATCTGAACCTGACGCTATGTGGGAATAGTTG GAAGATTTTAAGACCAAGTATTCAAGTGTAGAACTCGAGGACGAGCTCTTTGTTGTGAAG GGAGGAAATGTTGTCGACTCCTTCTTGGGTAAGGAGTACAAGCGTCACCATAGGTCCAGG GCCCAGGGGTCAGTTGGAGGTGTCGCCATAAATCCAGGAGTTAGTTAGATCTAACTCATT ATTAGGGTCAGATAATCTTGTCAATTAGTTGGAGGGTAAACATCCGCACCGGTACTATAA GGGTGCGAGTAGTTTGTATTAGGTTTTCCTTATAAGAAAAGAGTTTCCGGTTGTGGGAAC TCCTTTGTCACCATAGCTGATCTTGCAGCTTATGACGGTGTCGATGGAGTTCCAGTGGCC AGCCAGAGTCCCTACCTCCTGAGATCTCTCCCCCAGTCCAGTTACCTCCTCCACTGTCCC CTACACAGCCCCAAGAGACCAAACCTTATTGTTGGAATATAATATAAGTGAATTGTCCGC CTCGTCCTATCAGCTTAAGCTTTTAGGTTAGACTAATTGGTGCATGCAACTTAATATGGT ACCAGAGCTAGATCACGAGTTAGAATACTGGTTAGTGCAGTTCAAATAAAATAATTGTTG TTCGCTCCTATTCCACGTCTGAGACCTAAGAGAGGCTCGACGTGAGTGAGAGTATTGGAA TATAATATAAGTGAATTGTCCGTCTCTTCTTATCAGCTTAAGCTTTTAGGTTAGACTGGT TGGTGCATGCAACTTAATACTTATCATCCTCACTTAGTTTAGTCCATCATTTGACATGTA TGCTATCCTTACATTTCTTTCCTACTGATGCAGGAAATGAAAGACCAATGTGATCAAAAA AGAGTGGAATATGAAGCCATGCGAGCAGCCTATGGGGAGAAAGGAGGGCGATTGAGGCAC CTAAAAAATGAATCATTCTCATTGGGACAACTGCAAACTTCATTTCTTGAGTACCAAGAG GAGGCGGCATTGTTTATTTTTCGCTTGAAATCACTAAAGCAAGGTCAATTTTTAAGTATT TTGACACAGGCTGCTCGTCATCATGCTTCTCAGTTGAGTTTTTTCAGGAAAGGGCTGAAG CATCTAGAGGCTTTGGAGCCTTGTGTCAAAGCAGTTGCTGAGAAGCAGCACATTGACTAC CACTTCAGTGGACTGGATAATAACAGTGATATTGATGATTACAGCTCTTACCAGGATAAT CATAGTGATGGCAGTGAGTTAAGTTTTAACTATGAGATAAATGACAGGGACAAGGACCTC CCCACTTTCAGAAGTCCAATGGATATGGATCAAGCTCATCCAGTGAGTTCCCCAAGACCT CTGAAGGAACAGGAGCAGGAAAATGCTGAAGAAATAAAGGCGACTTTAGGAGTTCCTCAT ATGAAGCCTGAGATTGGTACCCAATCAGCACCAATTTTTGCTGAGAATGTTCCTGATCCA TCTATGAGATTCCGGAAAATGAACTTGTTAACCAGAACTGTTCACTCCTACAAACTCCCA ACGCCAGCTGATGACAAGAACCCTGCTTCAGTAATTGCCAACAAATCGCCTCATTCAGAT CAACCCGAGAGTAAATCTCACGTGGCAGTAAATTTGTGGCATTCCTCTCCACTGGCTAAA GATTTTATGCCGAATTCCATGCACAGTGGACCTGTTAAGATGCCATCAAGTAACGAAGGG GTATCACTAGCTTATTCCTACTCCACGACAGATTTTAAGAAAGTGAAGAGGGAAGCTTTT TCTGGCCCAATCCCAAGCAAGGTAGGATTGAGCACCCCCCTGATTTCTGCGACTGATCGC AAACCGTCAGGGAAGCGGCCTTCCTATGTGTTGCCAACAAGGCCTCCTGGCCCAGGTTGG CAGTCATCTGTGCCTCCAAAAGCTACGCCCAGGGTGACCTCGCTCCCAACAACGACTCCC AGGATAAGCGAGCTGCATGAGCTGCCCCGGCCTCCAGCAAATGCTGGTTTGGTTGGATAT TCTGGCCCTCTGGTTTCAAGGCGGCCGATGCCTACTGCTGTATCCACCACCCGTGTCTCA CCCCCATCACATACGGCGTCGCCACTCCCACGACCACCTGCTGCCATGACTCGTAGCTAC TCCATACCTTCAAACAGTCAACGGACTCCTATTATTACCGTGAACAAATTGTTGGAGGCT AGGCATAGCAGGGAGAGTAGCGAAGTTTCCTCCCCCCCAGTAACACCTATATCACTGGCA GACGTTTCCCGCAGACCAACAACAGAAGCAGCTGTTTGACAAGAAAAGGATAAAGGAATC CTTGTGAGCAGTTGCGCAACTGAACATGTTGATAATCTTAGGAAATTTTGTATGTGGTTG ACTGTATTCTATGATTCCCTCCATAATCTCTCGTGTTCCCTGCGAAAGGAAAAAAATGTA AATAAGGTTCCATTATGTTATCGCCTTGATATGCTTGTCCGAACTACCTCTTGGATATAG TGTAATAGTCTACAAGAGAGAGTTTAGATATGGACGCTGTTGATTCAGTGGTCATCTGAG CTAATTTTTTGGACTCTGGTGTGTAGCTCTACCCATAATACTGCACTGCCCGAACTGATA TTTGTATTAGCGGATATCTACAAGTTTAAGTTAGAGGTTTGGG