Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d025240_T041
CDS Infomation

cds chromosome:B73_RefGen_v4:10:110660361:110663406:1 gene:Zm00001d025240 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:alpha keto dehydrogenase candidate1 description:2-oxoglutarate dehydrogenase E1 component
Sequence

ATGACTACTCTGCCAGAAAATTTCAAGCCTCACAGGGCTGTGAAGAAGATTTTTGATCTA
CGGCGTCAGATGATCGAGACTGGAGAAGGCATTGATTGGGCAGTTGGTGAAGCACTTGCT
TTTGCTACTCTTATAATTGAGGGGAACCATGTCAGGTTAAGTGGTCAGGATGTTGAGAGG
GGTACATTTAGCCATCGACACTCTGTCATCCATGACCAAGAAACTGGAGAGCAGTACTGC
CCGCTGGATCATCTTGTTATGAACCAAGATGCGGAGCTTTTTACTGTGAGCAACAGTTCC
CTGTCAGAATTTGCTGTTTTGGGCTTTGAATTGGGTTACTCCATGGAGAACCCAAACTCA
TTGGTCTTATGGGAAGCTCAGTTTGGTGATTTTTCAAATGGAGCTCAAGTGATATTTGAT
CAGTTCCTGAGTAGTGGGGAGTCAAAATGGCTCCGCCAGACTGGCCTTGTCGTTTGCCTT
CCTCATGGATATGATGGTCAGGGGCCTGAACATTCTAGTGCAAGATTGGAACGCTTTCTT
CAGATGAGTGATGACAACCCTTATGTTATACCCGAGATGGATCCAACACTGCGGAAGCAA
ATCCAGCAGTGCAATTGGCAGGTCGTTAATGTAACAACTCCTGCAAATTATTTCCATGTT
CTGCGTCGCCAGATACACCGGGACTTCAGGAAGCCTTTGATTGTGATGTCCCCAAAGAAC
CTCCTTCGCCACAAGGACTGCAAGTCGAACCTATCTGAATTTGATGATCTTGCGGGCCAC
CCTGGATTCGACAAACAGGGGACACGCTTCAAGCGTCTCATTAAGGACCAGAATAATCAC
AAGGACCTCGAGGAGGGAATCAACCGCCTAGTTCTTTGCTCTGGAAAGGTGTACTATGAA
CTGGATGAAGAAAGAAGGAAGTCGGAGCGCACTGATGTTGCTATATGTAGAGTTGAGCAG
CTCTGCCCGTTCCCCTATGACCTCATCCAGCGCGAGTTGAAGAGATATCCAAATGCCGAG
ATCGTGTGGTGCCAAGAGGAGCCGATGAACATGGGAGCATACAGCTACATCAACCCGCGG
TTGCTGACGGCGATGAAGGTTCTGGGCCGGGGTGGCATCGAGGACATCAAGTACGTCGGC
AGGGCCCCGTCGGCTGCTACCGCGACGGGCTTCTACTCGGTGCACGTGCAGGAGCAGACG
GAGCTGGTGCAGAAGGCGCTGCAGCGCGACCCCCTCAACTACCCTTTCTGA

Peptide Sequence

PEP ID

Zm00001d025240_P041
PEP Infomation

pep chromosome:B73_RefGen_v4:10:110660361:110663406:1 gene:Zm00001d025240 transcript:Zm00001d025240_T041 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:alpha keto dehydrogenase candidate1 description:2-oxoglutarate dehydrogenase E1 component
Sequence

MTTLPENFKPHRAVKKIFDLRRQMIETGEGIDWAVGEALAFATLIIEGNHVRLSGQDVER
GTFSHRHSVIHDQETGEQYCPLDHLVMNQDAELFTVSNSSLSEFAVLGFELGYSMENPNS
LVLWEAQFGDFSNGAQVIFDQFLSSGESKWLRQTGLVVCLPHGYDGQGPEHSSARLERFL
QMSDDNPYVIPEMDPTLRKQIQQCNWQVVNVTTPANYFHVLRRQIHRDFRKPLIVMSPKN
LLRHKDCKSNLSEFDDLAGHPGFDKQGTRFKRLIKDQNNHKDLEEGINRLVLCSGKVYYE
LDEERRKSERTDVAICRVEQLCPFPYDLIQRELKRYPNAEIVWCQEEPMNMGAYSYINPR
LLTAMKVLGRGGIEDIKYVGRAPSAATATGFYSVHVQEQTELVQKALQRDPLNYPF

Transcript Sequence

Transcript ID

Zm00001d025240_T041
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:110660361:110663406:1 gene:Zm00001d025240 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:alpha keto dehydrogenase candidate1 description:2-oxoglutarate dehydrogenase E1 component
Sequence

GTGTCAAGCCAGAGATTCTAAAACGTGTTGGAGAAGCCATGACTACTCTGCCAGAAAATT
TCAAGCCTCACAGGGCTGTGAAGAAGATTTTTGATCTACGGCGTCAGATGATCGAGACTG
GAGAAGGCATTGATTGGGCAGTTGGTGAAGCACTTGCTTTTGCTACTCTTATAATTGAGG
GGAACCATGTCAGGTTAAGTGGTCAGGATGTTGAGAGGGGTACATTTAGCCATCGACACT
CTGTCATCCATGACCAAGAAACTGGAGAGCAGTACTGCCCGCTGGATCATCTTGTTATGA
ACCAAGATGCGGAGCTTTTTACTGTGAGCAACAGTTCCCTGTCAGAATTTGCTGTTTTGG
GCTTTGAATTGGGTTACTCCATGGAGAACCCAAACTCATTGGTCTTATGGGAAGCTCAGT
TTGGTGATTTTTCAAATGGAGCTCAAGTGATATTTGATCAGTTCCTGAGTAGTGGGGAGT
CAAAATGGCTCCGCCAGACTGGCCTTGTCGTTTGCCTTCCTCATGGATATGATGGTCAGG
GGCCTGAACATTCTAGTGCAAGATTGGAACGCTTTCTTCAGATGAGTGATGACAACCCTT
ATGTTATACCCGAGATGGATCCAACACTGCGGAAGCAAATCCAGCAGTGCAATTGGCAGG
TCGTTAATGTAACAACTCCTGCAAATTATTTCCATGTTCTGCGTCGCCAGATACACCGGG
ACTTCAGGAAGCCTTTGATTGTGATGTCCCCAAAGAACCTCCTTCGCCACAAGGACTGCA
AGTCGAACCTATCTGAATTTGATGATCTTGCGGGCCACCCTGGATTCGACAAACAGGGGA
CACGCTTCAAGCGTCTCATTAAGGACCAGAATAATCACAAGGACCTCGAGGAGGGAATCA
ACCGCCTAGTTCTTTGCTCTGGAAAGGTGTACTATGAACTGGATGAAGAAAGAAGGAAGT
CGGAGCGCACTGATGTTGCTATATGTAGAGTTGAGCAGCTCTGCCCGTTCCCCTATGACC
TCATCCAGCGCGAGTTGAAGAGATATCCAAATGCCGAGATCGTGTGGTGCCAAGAGGAGC
CGATGAACATGGGAGCATACAGCTACATCAACCCGCGGTTGCTGACGGCGATGAAGGTTC
TGGGCCGGGGTGGCATCGAGGACATCAAGTACGTCGGCAGGGCCCCGTCGGCTGCTACCG
CGACGGGCTTCTACTCGGTGCACGTGCAGGAGCAGACGGAGCTGGTGCAGAAGGCGCTGC
AGCGCGACCCCCTCAACTACCCTTTCTGAAAGAAACGAGGCCCCTGTAGATTCTTGGAAT
TGGGGACCTTTTGAATTTGATATAATACCAATATAGAGAGAACATGCCTTAAATTTTATC
TGTGCAGCCATTTGGTGAAATAATTGTTTCGACTCTGCAGTACCGCATGAAACAAACCGT
TGTAAGTTT