Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d025234_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:10:110338608:110344763:1 gene:Zm00001d025234 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable DNA primase large subunit
Sequence

ATGGAGATCGTGCGCTCCCACCGGCAGGTTGCCGCCGCAGCCGCCGGTGGCGGCGCGGGG
GCCCTGCCGACCTACAAAGCGGCGCCGCAGCTCGAGGTGCGGCTGGAGGAGTTCGAGCTC
TTCGCCATCGACCGCCTCCGAGTTCTCAAGGGGATTTCGGATGGACTCTCACGGGGGAAG
AGGCCGGAGGAGGTGGAGAAACTGGTCAATGAATTGTGGAAGACACACATGGGGCACCAG
GATCCAGCAGAGACTTTGAATAAGGATATAATATCACACTTTGTGCTCCGTCTTGTCTAC
TGCAGAACGGAAGAATTGCGGAAGTGGTTTCTCTCCATGGAGACTACACTTTTTCGGTAT
CGCTTTCGGCTTGAGAACCCTGAATCACAGAGGATGCTTATGACTGAGTTTCAACTGCCA
TACAAAGCATTGCCACACTCAGAATTCGAGGCTGTGAAAGACAAGTTGAGCCAAGTTGCA
CGTTCCATCGGTCAATCTGCAAATGTTGATCATGTGTTCTTCAAGGTACCTTTTGAACAA
GTTCCTGATCTTGTTGCCAGCCGCCGGGTATTTCTTTCAAAAGGCTATGCTTATGTGGCG
ATGAATCAGGTGGTTTCGCTAGTGGTTACTCAATTCCGCTGCAATATTTCAAAGGCACTT
GCTTTAACAAACAGAAAATGGTCAGCAACCATTAAAGAACAAGAAAAGGACAGGTTGACT
CCTATTGTCGAAGCATTAAGCAATGCTTATTTTGGACCCGATTACTCCCAGCCAAAGGAT
GCCGTTGACATATCTCTAAAGGATATTGACCAACTGGCTAAAAGTTCTTTCCCTCTTTGT
ATGCGGCATATGCTTGATAAGTTGAGAGAAAACCATCATCTGAAGCATGGGGGTAGATTG
CAGTTTGGTCTTTTTCTTAAGGGTGCTGGACTAAAGTTGGAAGATGCTCTTGCATTTTGG
AGGGCGGAATTTTCTCAGAAGATTGGTTCTGAGCGGTTCGACAAGGAATATGCCTATAGC
ATCAGACATAATTATGGAAAAGAAGGAAAACGGACAGATTACACTCCATATTCATGCCAA
AATATCATATCTGCAACACCTGGTGTTGGAGATCACCATGGATGCCCGTTTCGACATTTT
GGCGAAGAAAATTTGCGGGCAGCACTCAACAAAATGGGCGTTGGTGGGCATGCATTGGAA
GAGATAATAGATAAAGTGAAGAACAGGCATTACCAGCTAGCTTGCACATTAACATTTGAG
ACCACACACGGTGTCTCCTGTGATTCTGGAATCAACCATCCAAACCAATATTTCAGTGAA
AGCCAGAAAGTTCTGCGGGCCAAAAACCAGAAAATGGAGAGCCAATCAGCAACCTAA

Peptide Sequence

PEP ID

Zm00001d025234_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:10:110338608:110344763:1 gene:Zm00001d025234 transcript:Zm00001d025234_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable DNA primase large subunit
Sequence

MEIVRSHRQVAAAAAGGGAGALPTYKAAPQLEVRLEEFELFAIDRLRVLKGISDGLSRGK
RPEEVEKLVNELWKTHMGHQDPAETLNKDIISHFVLRLVYCRTEELRKWFLSMETTLFRY
RFRLENPESQRMLMTEFQLPYKALPHSEFEAVKDKLSQVARSIGQSANVDHVFFKVPFEQ
VPDLVASRRVFLSKGYAYVAMNQVVSLVVTQFRCNISKALALTNRKWSATIKEQEKDRLT
PIVEALSNAYFGPDYSQPKDAVDISLKDIDQLAKSSFPLCMRHMLDKLRENHHLKHGGRL
QFGLFLKGAGLKLEDALAFWRAEFSQKIGSERFDKEYAYSIRHNYGKEGKRTDYTPYSCQ
NIISATPGVGDHHGCPFRHFGEENLRAALNKMGVGGHALEEIIDKVKNRHYQLACTLTFE
TTHGVSCDSGINHPNQYFSESQKVLRAKNQKMESQSAT

Transcript Sequence

Transcript ID

Zm00001d025234_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:110338608:110344763:1 gene:Zm00001d025234 gene_biotype:protein_coding transcript_biotype:protein_coding description:Probable DNA primase large subunit
Sequence

GTGGGCTGTGGTCTCCGACGACGCCCGCGCACCACCGTCAACAGGCGCCGACCGCTACCC
CCGGCCGGACGAGGATCCGCTTACTGCGCAGCCTCCGACGCCGCATGGAGATCGTGCGCT
CCCACCGGCAGGTTGCCGCCGCAGCCGCCGGTGGCGGCGCGGGGGCCCTGCCGACCTACA
AAGCGGCGCCGCAGCTCGAGGTGCGGCTGGAGGAGTTCGAGCTCTTCGCCATCGACCGCC
TCCGAGTTCTCAAGGGGATTTCGGATGGACTCTCACGGGGGAAGAGGCCGGAGGAGGTGG
AGAAACTGGTCAATGAATTGTGGAAGACACACATGGGGCACCAGGATCCAGCAGAGACTT
TGAATAAGGATATAATATCACACTTTGTGCTCCGTCTTGTCTACTGCAGAACGGAAGAAT
TGCGGAAGTGGTTTCTCTCCATGGAGACTACACTTTTTCGGTATCGCTTTCGGCTTGAGA
ACCCTGAATCACAGAGGATGCTTATGACTGAGTTTCAACTGCCATACAAAGCATTGCCAC
ACTCAGAATTCGAGGCTGTGAAAGACAAGTTGAGCCAAGTTGCACGTTCCATCGGTCAAT
CTGCAAATGTTGATCATGTGTTCTTCAAGGTACCTTTTGAACAAGTTCCTGATCTTGTTG
CCAGCCGCCGGGTATTTCTTTCAAAAGGCTATGCTTATGTGGCGATGAATCAGGTGGTTT
CGCTAGTGGTTACTCAATTCCGCTGCAATATTTCAAAGGCACTTGCTTTAACAAACAGAA
AATGGTCAGCAACCATTAAAGAACAAGAAAAGGACAGGTTGACTCCTATTGTCGAAGCAT
TAAGCAATGCTTATTTTGGACCCGATTACTCCCAGCCAAAGGATGCCGTTGACATATCTC
TAAAGGATATTGACCAACTGGCTAAAAGTTCTTTCCCTCTTTGTATGCGGCATATGCTTG
ATAAGTTGAGAGAAAACCATCATCTGAAGCATGGGGGTAGATTGCAGTTTGGTCTTTTTC
TTAAGGGTGCTGGACTAAAGTTGGAAGATGCTCTTGCATTTTGGAGGGCGGAATTTTCTC
AGAAGATTGGTTCTGAGCGGTTCGACAAGGAATATGCCTATAGCATCAGACATAATTATG
GAAAAGAAGGAAAACGGACAGATTACACTCCATATTCATGCCAAAATATCATATCTGCAA
CACCTGGTGTTGGAGATCACCATGGATGCCCGTTTCGACATTTTGGCGAAGAAAATTTGC
GGGCAGCACTCAACAAAATGGGCGTTGGTGGGCATGCATTGGAAGAGATAATAGATAAAG
TGAAGAACAGGCATTACCAGCTAGCTTGCACATTAACATTTGAGACCACACACGGTGTCT
CCTGTGATTCTGGAATCAACCATCCAAACCAATATTTCAGTGAAAGCCAGAAAGTTCTGC
GGGCCAAAAACCAGAAAATGGAGAGCCAATCAGCAACCTAAATTGTATTGCAGCTGGAGA
AACTATGCATCTTCAAAAATCTTACCAGCAGGTAAGCACTGAAGCAATATTCATCCTTGA
AGCCAATTATGTTATCATTACTGATTGTTGACCATTGGCGTCTACCTGGAATATTGTTGC
TTCCTGCTGTTACCAAATTCCAGCTGCTGGCTTGGCCTAAAAAGACCAGGCTCCAGCTGT
TAGCTGCCATGCCCTACCCAAGTGATGGCACCACACTGTACACTAGAAGTAGAAGTGTTA
TCTAGTGCTGCGAACAGCAGCAGGTCAAATGCGTGTGTACATGTAATTCTCCGAAGAACC
AAGAGTGAACATTCTGAATTTGATGGGATCAGCTGTGCTGTTATGTTATTGCCAAGATCT
TTGGGTAGAATAGAGTTCTTTACTTCTGATTATGCCCATGTATTCTTTTTAAGTGACT