Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d025149_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:10:106629010:106638259:-1 gene:Zm00001d025149 gene_biotype:protein_coding transcript_biotype:protein_coding description:Kinesin-like protein KIN-12A
Sequence

ATGTCCCTCTTGTCGCGGCACGCGCGTCACCCCACTACGCCGCCGCCCGCCTCTTTCTCC
GGCGGCGTTGAGACCCCACCTCGTCGCCGCGTCCCCAAAGAGAACGTTGACCCCTCCTCC
CCGGCGCGCAACCACCACTCTGCCCTCGACCACGGCGCCTCCCCCTTCCGCTCCCCGTCC
TCCGCGGCCAAGCCGCTCTCCGCCCGCAACCGCTTGCCACCGCGTCCGCCGTCCTCTAAT
CCACTAAAGAGGAAGCTCGAAGTCTCCCCTGCAGCGGCCGCGGTGGGCTCCGCGCACGAT
GCCGCACCCGGGCTCGACTCCGGCGTCCAGGTGGTGGTGAGGATACGGCCGTCGTGCTGG
GTCGATGAAGAGGAGGCAGGCGAGGATGGGAGGGGACCGGAGGCCTGCGTGCGCAAGACG
GCGGCCAACTCGGTTGCGATCCAGGGGCAGGACTTCACGTTTGATGCTGTCGCTGACTCG
GTCTCCACGCAGGAGGATATCTTCACCCTTGTTGGGCTGCCACTTGTTGAAAATTGCTTA
TCAGGTTTCAACAGCTCCATATTTGCCTATGGACAGACTGGCAGTGGGAAAACCTACACT
ATGTGGGGGCCTCTATCTGCATTGTCAGAAGATTCATTGAGCAGCGAGAGGGGCTTAACA
CCTCGTGTATTTGAGCAGTTGTTCTCCCGCATTAACGAAGTAATGAACAAGTTAAACATG
CTGACAAAGAGCTTACTTACAATTGTATCTGCTCGTTTCTCGAGGCAATTTCTCTTCTTA
ATCTACAATGAACAGATAACTGATTTGCTAGATCCCTCGCAGAAGAATCTTCAGGTTAGA
GAGGATGTCAGAACTGCCTGTGTTTATGTTGAATCATTGACAAAGGAGTTGGTTTTCACC
TTGAAGGATGTAACTCAGTTGTTGGTTAAGGGCCTGGCAAACCGGAGGACTGGGGCAACG
AGCGCAAATGCTGATAGCTCACGCTCGCATTGTGTTTTTACGTGTGTCATTAAGATGGAT
TCTAAGAATCCAGAGGATGGCTCAAGCATCACAAGATCAAGTAGGATAAACTTGGTAGAC
CTTGCTGGATCAGAGCGACAAAAACTAACACATGCAGCTGGGGATCGACTGAAAGAAGCT
GGAAACATAAACCGTTCACTTTCACAGCTCGGAAACTTGATTAATATACTTGCAGAAATA
TCGCAGTCTGGAAAACAAAGGCACCATGTTCCATATCGTGATTCCAAGCTTACATTTCTA
TTACAAGAATCCCTTGGAGGCAATGCCAAACTGGCAATGATTTGTGCTGTTTCACCGTCC
CAAAGCTGTAAGAGTGAAACGTTAAGCACACTTAGGTTTGCTCAACGTGCGAAAGCTATA
AAAAACAATGCCGTAGTTAATGAAGAGAAAATTGAAGATGTAAATGCGTTGCGTGAGCAA
ATCAGGCAATTGAAGGATGAACTTCACCGAATGAAATCTAATGGAGGCATAGAAGGGAAC
AGCGGCAGCTTTGCCACTGGATGGAACCCTAGGCGCAGTTTGCATCTGTTGAAAATGAGT
TTGGGTCATCCTACAACATTCCAATGTATAAAAGAAGATAGTGACGAGGAAATGGAAATT
GATGAGAATGATGTTGAGAAGCCCTACAATCATGAAAATATGGCAATGTCTTCTATTAAT
GTTAAAGAATCCAAACGTTTCCAAGCTTCAATGAATGTAAGTGCTGGAACTTCACAGGTT
GAAGATCTTGACAGGGATAAGATTTTGATATCCATAAAAAGGTCCTGCTGTAGTGCTAAT
AAATTTAATACTGGTACTGATGTTGGAGATGGAAAATGCAAATTAAACATTGCCGCCAGT
ATACAGAGGGGACTTCAAGTCATTGAAAGTCACCAAAATAATAGTGCATGGAAGAGAGCA
TCGGTTGGATTAAATGCTAGAATCATGGATATTCAACCTTGCAAGGTTGATGTTGCAATT
CAGACTGATCCTGAAGAATACGAAACTAGAGATAACCCTCTAGCTCTGGTTCCTAGTTGT
CTGCTTGAAGCTTCTGCAAATGAGAGTAGGGATCCCAGTACTTGCAGGGACCTACAACTA
GTACCAGTTGATGTGACAGTACCATCTGATGACCAAAAGCAGCGACATTTTCTGAAAGCT
GTGGAGAAGGTCTTGGCTGGAGCTATCAGGCGAGAGATGGCTCGTGATGAACAGTGTGCA
AAGCAAGCTGCAGAAATTCAACAACTGAATCGTCTGGTGCAACAGTACAAGCATGAACGC
GAATGTAATGCTGTAATTGCACAAACACTTGAAGGAAAAATTGCTAGGCTTGAGAGCCTC
ATGGATGGAACTTTACCAGCTGAAGAATTCATGAATGAAGAGTTTTTATCACTTATGAAT
GAGCATAAGATCCTCCAAAAGAAATATGAAAACCATCCTGATGTTTTGCATGCTGAAATT
GAGGTAAAGAGACTCCAGGAGGAATTGGACATGTTCAGGAACTCTGTGGACGAGAAAGAA
GTTCTACAGGAGGAGATACAAGATCTGAAAAATCAGTTGCATTATATGCTTTCATCATCG
TCATCAATCCGTAGGCTCTGGCCTCCAGTGCCGTTGTCTCAGGGAAGTAATTCTGAACGT
GGAACAAAAGATATAGATGGAGATACTAATTTTGTGGACACTCCCAATTGGACTGAGGCT
GAGAGTAAATGGATTACACTCACTGAAGAGCTTAGAGTTGAACTTGAAGCAACAAAATCC
CTTGTTGGAAAGTTGCAGTCAGAACTGGATTCTGAGAAGAAATGTTCAGAAGAACTAAAG
GAGGCACTACAAACAGCTATCCAAGGAGCTGCAAGACACCTGGAACAATATGCTGATCTT
CAAGAGAATCATTTTCGTTTGCTTGCTCTGCATAGGAGGATGCGCGAGGGTGTTGAGGAT
GTGAAGATGAGGGCAGAAAAAGCTGGTATCAAAGGTGCTGAGTTGCGGTTAATTAACTCC
CTTGCAGCTGAAATCTCAGTTATAAAAGCTCAAAATGAAGGCCTTCAGGGCCAGCTAAGG
GATACTGCTGAAGCTGTTCAGGCAGCTGGCTTTTGCACTCCTTTGTTGCAGAAGCAAGCT
TTAGTGGCAGAGCAAGAGACGGAGAAAGCTTATCAGGAGATTGATAACTTGAAAAAGAAC
TACGACCAGGAAATCCTCGCTCTAAAGCAGCGTCTCGCTGAGCCCTCTCCGTGCAAGGAC
GATATGGTACAGCCACAAGAACCGAACAATCTTGAGCCTCCTATGTATGACACAGCTGGT
AGCCACAGTAGGCAGAATTGGAAGGAGTTCAATACCTTGCAACAAGGAGGATCATTTGAG
GTCTCCAAGAGCACAGACCTCAACTCGTGGTTTTACGGATACGACAAATGTAACATTTGA

Peptide Sequence

PEP ID

Zm00001d025149_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:10:106629010:106638259:-1 gene:Zm00001d025149 transcript:Zm00001d025149_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Kinesin-like protein KIN-12A
Sequence

MSLLSRHARHPTTPPPASFSGGVETPPRRRVPKENVDPSSPARNHHSALDHGASPFRSPS
SAAKPLSARNRLPPRPPSSNPLKRKLEVSPAAAAVGSAHDAAPGLDSGVQVVVRIRPSCW
VDEEEAGEDGRGPEACVRKTAANSVAIQGQDFTFDAVADSVSTQEDIFTLVGLPLVENCL
SGFNSSIFAYGQTGSGKTYTMWGPLSALSEDSLSSERGLTPRVFEQLFSRINEVMNKLNM
LTKSLLTIVSARFSRQFLFLIYNEQITDLLDPSQKNLQVREDVRTACVYVESLTKELVFT
LKDVTQLLVKGLANRRTGATSANADSSRSHCVFTCVIKMDSKNPEDGSSITRSSRINLVD
LAGSERQKLTHAAGDRLKEAGNINRSLSQLGNLINILAEISQSGKQRHHVPYRDSKLTFL
LQESLGGNAKLAMICAVSPSQSCKSETLSTLRFAQRAKAIKNNAVVNEEKIEDVNALREQ
IRQLKDELHRMKSNGGIEGNSGSFATGWNPRRSLHLLKMSLGHPTTFQCIKEDSDEEMEI
DENDVEKPYNHENMAMSSINVKESKRFQASMNVSAGTSQVEDLDRDKILISIKRSCCSAN
KFNTGTDVGDGKCKLNIAASIQRGLQVIESHQNNSAWKRASVGLNARIMDIQPCKVDVAI
QTDPEEYETRDNPLALVPSCLLEASANESRDPSTCRDLQLVPVDVTVPSDDQKQRHFLKA
VEKVLAGAIRREMARDEQCAKQAAEIQQLNRLVQQYKHERECNAVIAQTLEGKIARLESL
MDGTLPAEEFMNEEFLSLMNEHKILQKKYENHPDVLHAEIEVKRLQEELDMFRNSVDEKE
VLQEEIQDLKNQLHYMLSSSSSIRRLWPPVPLSQGSNSERGTKDIDGDTNFVDTPNWTEA
ESKWITLTEELRVELEATKSLVGKLQSELDSEKKCSEELKEALQTAIQGAARHLEQYADL
QENHFRLLALHRRMREGVEDVKMRAEKAGIKGAELRLINSLAAEISVIKAQNEGLQGQLR
DTAEAVQAAGFCTPLLQKQALVAEQETEKAYQEIDNLKKNYDQEILALKQRLAEPSPCKD
DMVQPQEPNNLEPPMYDTAGSHSRQNWKEFNTLQQGGSFEVSKSTDLNSWFYGYDKCNI

Transcript Sequence

Transcript ID

Zm00001d025149_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:106629010:106638259:-1 gene:Zm00001d025149 gene_biotype:protein_coding transcript_biotype:protein_coding description:Kinesin-like protein KIN-12A
Sequence

CCCACCCCCGACTCGAGTCTAGTTCCGTTCGAAAAAATTCAAATCCCCCTCCCCCCCTGC
CAACGTCTCGTTCTCCCCAAGCGGCCTCCGCAGCCAGCCATTGAGCCATGTCCCTCTTGT
CGCGGCACGCGCGTCACCCCACTACGCCGCCGCCCGCCTCTTTCTCCGGCGGCGTTGAGA
CCCCACCTCGTCGCCGCGTCCCCAAAGAGAACGTTGACCCCTCCTCCCCGGCGCGCAACC
ACCACTCTGCCCTCGACCACGGCGCCTCCCCCTTCCGCTCCCCGTCCTCCGCGGCCAAGC
CGCTCTCCGCCCGCAACCGCTTGCCACCGCGTCCGCCGTCCTCTAATCCACTAAAGAGGA
AGCTCGAAGTCTCCCCTGCAGCGGCCGCGGTGGGCTCCGCGCACGATGCCGCACCCGGGC
TCGACTCCGGCGTCCAGGTGGTGGTGAGGATACGGCCGTCGTGCTGGGTCGATGAAGAGG
AGGCAGGCGAGGATGGGAGGGGACCGGAGGCCTGCGTGCGCAAGACGGCGGCCAACTCGG
TTGCGATCCAGGGGCAGGACTTCACGTTTGATGCTGTCGCTGACTCGGTCTCCACGCAGG
AGGATATCTTCACCCTTGTTGGGCTGCCACTTGTTGAAAATTGCTTATCAGGTTTCAACA
GCTCCATATTTGCCTATGGACAGACTGGCAGTGGGAAAACCTACACTATGTGGGGGCCTC
TATCTGCATTGTCAGAAGATTCATTGAGCAGCGAGAGGGGCTTAACACCTCGTGTATTTG
AGCAGTTGTTCTCCCGCATTAACGAAGTAATGAACAAGTTAAACATGCTGACAAAGAGCT
TACTTACAATTGTATCTGCTCGTTTCTCGAGGCAATTTCTCTTCTTAATCTACAATGAAC
AGATAACTGATTTGCTAGATCCCTCGCAGAAGAATCTTCAGGTTAGAGAGGATGTCAGAA
CTGCCTGTGTTTATGTTGAATCATTGACAAAGGAGTTGGTTTTCACCTTGAAGGATGTAA
CTCAGTTGTTGGTTAAGGGCCTGGCAAACCGGAGGACTGGGGCAACGAGCGCAAATGCTG
ATAGCTCACGCTCGCATTGTGTTTTTACGTGTGTCATTAAGATGGATTCTAAGAATCCAG
AGGATGGCTCAAGCATCACAAGATCAAGTAGGATAAACTTGGTAGACCTTGCTGGATCAG
AGCGACAAAAACTAACACATGCAGCTGGGGATCGACTGAAAGAAGCTGGAAACATAAACC
GTTCACTTTCACAGCTCGGAAACTTGATTAATATACTTGCAGAAATATCGCAGTCTGGAA
AACAAAGGCACCATGTTCCATATCGTGATTCCAAGCTTACATTTCTATTACAAGAATCCC
TTGGAGGCAATGCCAAACTGGCAATGATTTGTGCTGTTTCACCGTCCCAAAGCTGTAAGA
GTGAAACGTTAAGCACACTTAGGTTTGCTCAACGTGCGAAAGCTATAAAAAACAATGCCG
TAGTTAATGAAGAGAAAATTGAAGATGTAAATGCGTTGCGTGAGCAAATCAGGCAATTGA
AGGATGAACTTCACCGAATGAAATCTAATGGAGGCATAGAAGGGAACAGCGGCAGCTTTG
CCACTGGATGGAACCCTAGGCGCAGTTTGCATCTGTTGAAAATGAGTTTGGGTCATCCTA
CAACATTCCAATGTATAAAAGAAGATAGTGACGAGGAAATGGAAATTGATGAGAATGATG
TTGAGAAGCCCTACAATCATGAAAATATGGCAATGTCTTCTATTAATGTTAAAGAATCCA
AACGTTTCCAAGCTTCAATGAATGTAAGTGCTGGAACTTCACAGGTTGAAGATCTTGACA
GGGATAAGATTTTGATATCCATAAAAAGGTCCTGCTGTAGTGCTAATAAATTTAATACTG
GTACTGATGTTGGAGATGGAAAATGCAAATTAAACATTGCCGCCAGTATACAGAGGGGAC
TTCAAGTCATTGAAAGTCACCAAAATAATAGTGCATGGAAGAGAGCATCGGTTGGATTAA
ATGCTAGAATCATGGATATTCAACCTTGCAAGGTTGATGTTGCAATTCAGACTGATCCTG
AAGAATACGAAACTAGAGATAACCCTCTAGCTCTGGTTCCTAGTTGTCTGCTTGAAGCTT
CTGCAAATGAGAGTAGGGATCCCAGTACTTGCAGGGACCTACAACTAGTACCAGTTGATG
TGACAGTACCATCTGATGACCAAAAGCAGCGACATTTTCTGAAAGCTGTGGAGAAGGTCT
TGGCTGGAGCTATCAGGCGAGAGATGGCTCGTGATGAACAGTGTGCAAAGCAAGCTGCAG
AAATTCAACAACTGAATCGTCTGGTGCAACAGTACAAGCATGAACGCGAATGTAATGCTG
TAATTGCACAAACACTTGAAGGAAAAATTGCTAGGCTTGAGAGCCTCATGGATGGAACTT
TACCAGCTGAAGAATTCATGAATGAAGAGTTTTTATCACTTATGAATGAGCATAAGATCC
TCCAAAAGAAATATGAAAACCATCCTGATGTTTTGCATGCTGAAATTGAGGTAAAGAGAC
TCCAGGAGGAATTGGACATGTTCAGGAACTCTGTGGACGAGAAAGAAGTTCTACAGGAGG
AGATACAAGATCTGAAAAATCAGTTGCATTATATGCTTTCATCATCGTCATCAATCCGTA
GGCTCTGGCCTCCAGTGCCGTTGTCTCAGGGAAGTAATTCTGAACGTGGAACAAAAGATA
TAGATGGAGATACTAATTTTGTGGACACTCCCAATTGGACTGAGGCTGAGAGTAAATGGA
TTACACTCACTGAAGAGCTTAGAGTTGAACTTGAAGCAACAAAATCCCTTGTTGGAAAGT
TGCAGTCAGAACTGGATTCTGAGAAGAAATGTTCAGAAGAACTAAAGGAGGCACTACAAA
CAGCTATCCAAGGAGCTGCAAGACACCTGGAACAATATGCTGATCTTCAAGAGAATCATT
TTCGTTTGCTTGCTCTGCATAGGAGGATGCGCGAGGGTGTTGAGGATGTGAAGATGAGGG
CAGAAAAAGCTGGTATCAAAGGTGCTGAGTTGCGGTTAATTAACTCCCTTGCAGCTGAAA
TCTCAGTTATAAAAGCTCAAAATGAAGGCCTTCAGGGCCAGCTAAGGGATACTGCTGAAG
CTGTTCAGGCAGCTGGCTTTTGCACTCCTTTGTTGCAGAAGCAAGCTTTAGTGGCAGAGC
AAGAGACGGAGAAAGCTTATCAGGAGATTGATAACTTGAAAAAGAACTACGACCAGGAAA
TCCTCGCTCTAAAGCAGCGTCTCGCTGAGCCCTCTCCGTGCAAGGACGATATGGTACAGC
CACAAGAACCGAACAATCTTGAGCCTCCTATGTATGACACAGCTGGTAGCCACAGTAGGC
AGAATTGGAAGGAGTTCAATACCTTGCAACAAGGAGGATCATTTGAGGTCTCCAAGAGCA
CAGACCTCAACTCGTGGTTTTACGGATACGACAAATGTAACATTTGA