Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d025134_T008
CDS Infomation

cds chromosome:B73_RefGen_v4:10:105954452:105977304:1 gene:Zm00001d025134 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGTCTTCTGGTATTCCTGATCTTGAAAGGTTCATCACTGAAAATATCTTGCGAGTTCTG
GTATTTCGATTCTTACTCCCGTCACTGCAGAGGCAGAGCACAGATTTGGACTTAAGTGTC
ACTACATCCATGTATCTACTTTGTTGTATACTACACATTTTTAAGAATAAGGATATGGCA
AGTACTGTAGCTGCTGCCCTTTTTCATCAACCTGATGGCCCTGATGATAGGAAGCAAAGG
ACACCTAATGGATATACATCTGAGCATGATAGTTGCAAATCTGAGAATCATTGCACCACT
GCCTCTGGTATCGAGCAATCAAGTGAGGAGCCAAATTCTTTGTCTTCTGTTAGTTGGAAA
CACTTGCCCAACAATTCATCGCGAAGTGATTGCTGCCAAGGAAACACACCAAGGGAACAC
TTGCTGTCCTATATCACAGAAGGAGATGATTCACAAGCTTTGGGTTCATTGTGCTTATTC
GCTACATTATTGCAGACGAAAGAACTTGATGAATCAATGCTGGATGCCCTTGGAATCCTC
CCTCAAAGAAAGCAGCATAAGAAACTTCTATTACAAGCTTTAGTAGGTGAAGACCTTGCT
GAAACACAATTATTTTCGTCAAGCAGCAGTCTAACTGATGACAGCATTTGTAGTGATTTT
GATATTTATGTAAGGAAGCTTCAGGATAAATATGGGCTACAATGTCACCATCCACGGCAA
ATGACTTCCAAAGCTCACAGATATCAGGTGCTCGATGCTTTAGTCGACCTTTTCTGCAGG
TCAAAGGTTTCTGCAGATGTTCGTTTGGTTGGTGGCTGGCTTTTCCGGCAACTGCTGCCC
CATGGAGAGGAAGAGTTCACTGCTTTTCATCTAAGACGACTAAAGGATTCACACAAGGAT
TGTAGCTCAAAGCTTTCTGAGGAATCTGGAGGATGCTGGTGTGACATGCTTCTTCCTATT
GTTAAAGAAGCTTGGAGGAACTGCAAGAAAGCAATTGAGGCATCTTCGCCACCAAAAGGA
TCCAAATCTATTATTGTACCCATGGATTTGTGTTCATTTGAAGGTGATTCTTCTGTTGCC
ATCGCAGAGGCACTCTATGAGATGGTTAAGGGTTTTGTGCTGCAGCATCAAGTTATACTC
TTCTGTCTTGGAGAAACTTTCACAGAGCTACCTCCTATTTACCCTCTGGTTGATTTGCCT
ATAAATACTAGGGCAAGCGCTGCAGATTTTGGTGGTTCAGTTCCTAAACCTGGGCTTGAA
GTCAACTTAGTCGACGCTGTTCCTTGTCGAATAGCATTTGAGAGGGGCAAAGAACGGCAC
TTCTGCTTTTTAGCCATAGCTCATGGAACTTCTGGTTGGATTCTTCTTCTAGAAGAATTA
CCTCTAAAACGGGAACGAGGAATTGTCCGTGTCATGGCACCTTTGGCAGGATCTGATCCA
AGAATAGATACAAAGCATGGGAAGTGGTTACATCTACGCATTCGCCCTTCTTCGGTCCCT
TTTTTGGACACTGAGAAGCATAAAGCGAAGACAAAGAAGTATCTTGTTGATGGGAGATGG
ACCCTTGCTTTTAGGGACGAGCAGTCCTGTAAGGTTGCAGAGAGTATGGTTATTGAAGAG
ATGAAACTCCAACGAGGTGCTGTTGCAGAGCAATTGAAGCCATTGGTTGAATTTGACATG
CCTGAGGATGGAATGCAGCACCCCCAGACTTCACATGAAACCCCTTCTGATGATGGATCA
TGA

Peptide Sequence

PEP ID

Zm00001d025134_P008
PEP Infomation

pep chromosome:B73_RefGen_v4:10:105954452:105977304:1 gene:Zm00001d025134 transcript:Zm00001d025134_T008 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MSSGIPDLERFITENILRVLVFRFLLPSLQRQSTDLDLSVTTSMYLLCCILHIFKNKDMA
STVAAALFHQPDGPDDRKQRTPNGYTSEHDSCKSENHCTTASGIEQSSEEPNSLSSVSWK
HLPNNSSRSDCCQGNTPREHLLSYITEGDDSQALGSLCLFATLLQTKELDESMLDALGIL
PQRKQHKKLLLQALVGEDLAETQLFSSSSSLTDDSICSDFDIYVRKLQDKYGLQCHHPRQ
MTSKAHRYQVLDALVDLFCRSKVSADVRLVGGWLFRQLLPHGEEEFTAFHLRRLKDSHKD
CSSKLSEESGGCWCDMLLPIVKEAWRNCKKAIEASSPPKGSKSIIVPMDLCSFEGDSSVA
IAEALYEMVKGFVLQHQVILFCLGETFTELPPIYPLVDLPINTRASAADFGGSVPKPGLE
VNLVDAVPCRIAFERGKERHFCFLAIAHGTSGWILLLEELPLKRERGIVRVMAPLAGSDP
RIDTKHGKWLHLRIRPSSVPFLDTEKHKAKTKKYLVDGRWTLAFRDEQSCKVAESMVIEE
MKLQRGAVAEQLKPLVEFDMPEDGMQHPQTSHETPSDDGS

Transcript Sequence

Transcript ID

Zm00001d025134_T008
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:105954452:105977304:1 gene:Zm00001d025134 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

GAAAGGGAAATTCTTCTGTGCCAATATCTTCTATTGAAGATGCAATTGTGCAAATTGAAG
ACACACTGTATTATTTCAGTGATGTTATGTCTTCTGGTATTCCTGATCTTGAAAGGTTCA
TCACTGAAAATATCTTGCGAGTTCTGGTATTTCGATTCTTACTCCCGTCACTGCAGAGGC
AGAGCACAGATTTGGACTTAAGTGTCACTACATCCATGTATCTACTTTGTTGTATACTAC
ACATTTTTAAGAATAAGGATATGGCAAGTACTGTAGCTGCTGCCCTTTTTCATCAACCTG
ATGGCCCTGATGATAGGAAGCAAAGGACACCTAATGGATATACATCTGAGCATGATAGTT
GCAAATCTGAGAATCATTGCACCACTGCCTCTGGTATCGAGCAATCAAGTGAGGAGCCAA
ATTCTTTGTCTTCTGTTAGTTGGAAACACTTGCCCAACAATTCATCGCGAAGTGATTGCT
GCCAAGGAAACACACCAAGGGAACACTTGCTGTCCTATATCACAGAAGGAGATGATTCAC
AAGCTTTGGGTTCATTGTGCTTATTCGCTACATTATTGCAGACGAAAGAACTTGATGAAT
CAATGCTGGATGCCCTTGGAATCCTCCCTCAAAGAAAGCAGCATAAGAAACTTCTATTAC
AAGCTTTAGTAGGTGAAGACCTTGCTGAAACACAATTATTTTCGTCAAGCAGCAGTCTAA
CTGATGACAGCATTTGTAGTGATTTTGATATTTATGTAAGGAAGCTTCAGGATAAATATG
GGCTACAATGTCACCATCCACGGCAAATGACTTCCAAAGCTCACAGATATCAGGTGCTCG
ATGCTTTAGTCGACCTTTTCTGCAGGTCAAAGGTTTCTGCAGATGTTCGTTTGGTTGGTG
GCTGGCTTTTCCGGCAACTGCTGCCCCATGGAGAGGAAGAGTTCACTGCTTTTCATCTAA
GACGACTAAAGGATTCACACAAGGATTGTAGCTCAAAGCTTTCTGAGGAATCTGGAGGAT
GCTGGTGTGACATGCTTCTTCCTATTGTTAAAGAAGCTTGGAGGAACTGCAAGAAAGCAA
TTGAGGCATCTTCGCCACCAAAAGGATCCAAATCTATTATTGTACCCATGGATTTGTGTT
CATTTGAAGGTGATTCTTCTGTTGCCATCGCAGAGGCACTCTATGAGATGGTTAAGGGTT
TTGTGCTGCAGCATCAAGTTATACTCTTCTGTCTTGGAGAAACTTTCACAGAGCTACCTC
CTATTTACCCTCTGGTTGATTTGCCTATAAATACTAGGGCAAGCGCTGCAGATTTTGGTG
GTTCAGTTCCTAAACCTGGGCTTGAAGTCAACTTAGTCGACGCTGTTCCTTGTCGAATAG
CATTTGAGAGGGGCAAAGAACGGCACTTCTGCTTTTTAGCCATAGCTCATGGAACTTCTG
GTTGGATTCTTCTTCTAGAAGAATTACCTCTAAAACGGGAACGAGGAATTGTCCGTGTCA
TGGCACCTTTGGCAGGATCTGATCCAAGAATAGATACAAAGCATGGGAAGTGGTTACATC
TACGCATTCGCCCTTCTTCGGTCCCTTTTTTGGACACTGAGAAGCATAAAGCGAAGACAA
AGAAGTATCTTGTTGATGGGAGATGGACCCTTGCTTTTAGGGACGAGCAGTCCTGTAAGG
TTGCAGAGAGTATGGTTATTGAAGAGATGAAACTCCAACGAGGTGCTGTTGCAGAGCAAT
TGAAGCCATTGGTTGAATTTGACATGCCTGAGGATGGAATGCAGCACCCCCAGACTTCAC
ATGAAACCCCTTCTGATGATGGATCATGACTAAATTTTCATCAAGTGCAGTGTTGAGCTT
CTCAATTAAGGAGACATGGCAACAGATGGCCGCAAAAGTGCCGCATTGAACATTTCAAGC
ATGCTGGCAGGAAAACCCACCATGGCAAGTCATCGACAATTCTGTACATTACATTGGGAG
ATTAGAGATGTCTCCTTGTTAACACACAACTGTAGAGTTTCGGGCCGTCCTGAGTTGAAC
TAGCTGGATAGGATTCTTTGTACAATAGTTTGTTTCTCTCCTTGCCCGTTGTAACCTTAT
ATATCACATCAAAACCCATTCTTTGTTAAGTTTCAGGGCACAGTTGTGTTGTGCACACGA
AATGTTTAAAGAAATTTGCAGTTAG