Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d025111_T063
CDS Infomation

cds chromosome:B73_RefGen_v4:10:104831195:104838689:-1 gene:Zm00001d025111 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein RAE1
Sequence

ATGGAGCCGAGGGTTCCTTGCGGCGACGGCGGCCCCGAACCTAGGGCCGCGAGAACGCAT
CGACGGGAGGGCGAGCGAAACCACGTCCTCGATGCGCGAATCCTGGAGCCTCAGCGACAG
AGATCGAATCCAATCAGGAACATCTTTCATCTATTAACTCAACGAGAGGTCTCACCTCGA
TTGAAACACCATGCTAAAAGAATGTGGAATGAGTCCCCAAAATATGATCCTGATTCAATT
GAGTTAAGGTCTGCAGATGCTAAACTTGATATTTTTTCATGGGCAGAATCACAGTCCCTG
CATAGCTGGTCTGCCAAGTATTGCCCTCTTTTGCCACCTCCTAGGTCAACTATTGCAGCT
GCTTTCAGTCCAGATGGAAAAACACTTGCGTCCACACATGGTGACCATACCGTGAAAATA
ATTGACTGCCAAACAGGGAAATGTTTGAAGGTTTTGACTGGACATCGACGCACTCCTTGG
GTGGTCAGGTATCATCCATTACATTCTGACATCCTGGCTAGCGGAAGTTTGGATCATGAA
GTTCGTCTATGGGATGCTAATACTTCAGACTGTATTGGGTCACAAGACTTCCATCGGCCA
ATTGCTTCCATTGCATTTCATGGAAGTGGGGAGATTTTGGCAGTTGCATCAGGTCACAAA
TTGTACATATGGAACTACAATAAGAGAGATGGCACTTCTGTACCAGCCATCATACTAAAA
ACCCGCCGCTCGCTGAGAGCTGTTCATTTTCATCCGCGTGGGGCTCCATATCTTCTAACA
GCAGAGGTTAATAATATAGAATCTGCAGACTCACCGCTGACTCTGGCAAGATCCTCTGGA
TATCTAAATTACCCATCGGCCCTGCTGGTGACAAACACTAATTCTAGATTCTGTACACTT
CCTGAGTCCAATGTGGTGTCACCTTGCTTACTGTGGCCTGCATACCTCAGAGATGGTGGA
ATTTTACATGTGCTCGGCAATGACAGTAGTTCAACCATTGTGCAGCAGAGATCATCATTA
GTTCAACCTTCCACATCAGATACTGCAAATGTACAGCTTGAACAGTTTGCTACCCCTATG
GATGTATGTCCGGGAGAGCCAACTTCATCTAATGACATACCCGATGCAGTAACTGTTCCT
ACTTCAAATGGAAATGAAATGCATGGTGCTGGAGGCCAGTCTAACTCAAGACTGCAGGGC
AGCAGCTCTACTAGTAATCTTGAGAGGTTCAGTGCTAGAGATGATTTGCAAGTGTCTTCC
CTGAGCAGGACTGACCCAATCCCATTAACAGCAGGGCCTTCAGGATCCGATTTACACCGT
GCTATGCCACTAAATATGCTCCTCACTGGCGGATTAGATGTTCAAATGTTCCTAAGAAAT
GTAGGAAGTGGACAGCAGGATCATTCTCTCTTCGGCGACTCACGTAACTGGGAGGTACCA
TTTTTGCAGGGTTTCTTGATGGCCCCAAACCATGCAGGTTTGCACCCTGCACTTGTGAAC
AATAGTGTCCTTGAAGACATGTCTATTGCTGGTACTGCAGGGACTAATAACTTGAAATCA
CCACACATGCGCAACTTTGGATGTCCAGGTGCTTCATCTTCGATTCCCCTTACCACTGGC
AGTTCTAGGGGACCAAATCGACGCTATGCTTCACGCTCTGTACCTGGGGTTGGGAATTTG
CTCCTAGGTCCTCAAATTGACGAAGCTGAAGCTCATGCTGTTTCACTAGGTGCTGGTTCT
GAAATCACTGCGTCCATGCTTGCTCCTGGTACTGAATTGCCTTGTACAGTGAAGCTCAGA
ATATGGCGGCACGGTACCAATGAACCATGTGTTCCTTTAGAACCTGAGGCATGCTGTCTG
ACGATTTCTCATGCCGTTCTCTGCAGTGAAATGGGTGCCCATTTTTCCCCATGTGGACGA
TTTCTGGTAGCATGTGTTGCGTGTTTGTTGCCACAAACAGAAGACGACCGTGGTAGCCAA
TTGCCTGTGTCTTACGAAGGGGCTGGATCATCACCAACTCGTCACCCGCTTCCCTCTCAT
CGAGTTATTTATGAGCTCCGGGTTTATTCCCTTGAGGCTGAGACATTTGGGGATATTCTT
GCTTCCAGAGCAATACGGGCAGCACATTGCTTAACATCCATTCAGTTCTCACCTACATCC
GAACACATACTTTTGGCATATGGTCGTCGTCATAGCTCGCTCCTTAGGAGCATAGTTGTG
GAAGGCGAAAATGGGGTTCCCGTATATACTATTTTGGAGGTATATAGAGTTTCAGATATG
GAGCTTGTGAGAGTGCTTCCTAGCGCTGAAGATGAAGTTAATGTTGCATGCTTTCATCCT
TCACCAGGAGGTGGCCTTGTTTATGGCACTAAGGAAGGGAAGCTCAGGATCCTTCAGCAC
AATGGCGCAGACATGACAAACATGGGGGTGGGTTGCTTCATTGAGGAAAATATGGTTGAG

Peptide Sequence

PEP ID

Zm00001d025111_P063
PEP Infomation

pep chromosome:B73_RefGen_v4:10:104831195:104838689:-1 gene:Zm00001d025111 transcript:Zm00001d025111_T063 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein RAE1
Sequence

MEPRVPCGDGGPEPRAARTHRREGERNHVLDARILEPQRQRSNPIRNIFHLLTQREVSPR
LKHHAKRMWNESPKYDPDSIELRSADAKLDIFSWAESQSLHSWSAKYCPLLPPPRSTIAA
AFSPDGKTLASTHGDHTVKIIDCQTGKCLKVLTGHRRTPWVVRYHPLHSDILASGSLDHE
VRLWDANTSDCIGSQDFHRPIASIAFHGSGEILAVASGHKLYIWNYNKRDGTSVPAIILK
TRRSLRAVHFHPRGAPYLLTAEVNNIESADSPLTLARSSGYLNYPSALLVTNTNSRFCTL
PESNVVSPCLLWPAYLRDGGILHVLGNDSSSTIVQQRSSLVQPSTSDTANVQLEQFATPM
DVCPGEPTSSNDIPDAVTVPTSNGNEMHGAGGQSNSRLQGSSSTSNLERFSARDDLQVSS
LSRTDPIPLTAGPSGSDLHRAMPLNMLLTGGLDVQMFLRNVGSGQQDHSLFGDSRNWEVP
FLQGFLMAPNHAGLHPALVNNSVLEDMSIAGTAGTNNLKSPHMRNFGCPGASSSIPLTTG
SSRGPNRRYASRSVPGVGNLLLGPQIDEAEAHAVSLGAGSEITASMLAPGTELPCTVKLR
IWRHGTNEPCVPLEPEACCLTISHAVLCSEMGAHFSPCGRFLVACVACLLPQTEDDRGSQ
LPVSYEGAGSSPTRHPLPSHRVIYELRVYSLEAETFGDILASRAIRAAHCLTSIQFSPTS
EHILLAYGRRHSSLLRSIVVEGENGVPVYTILEVYRVSDMELVRVLPSAEDEVNVACFHP
SPGGGLVYGTKEGKLRILQHNGADMTNMGVGCFIEENMVE

Transcript Sequence

Transcript ID

Zm00001d025111_T063
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:104831195:104838689:-1 gene:Zm00001d025111 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein RAE1
Sequence

CGACCTATCGGGGACAGCTCGATCTCCCTCCCTTGGCTGGAGCCTGGAGCCGACGGAGCA
GAACGACGGTTCCTTGCGGCGGCAGCGACCTCGAGCTGAGGGCGGCGAGAAGGCGGGAAC
AACTCGATCTCCCTTTGCTAGCTAGCTAGTCCCGATGGAGCCGAGGGTTCCTTGCGGCGA
CGGCGGCCCCGAACCTAGGGCCGCGAGAACGCATCGACGGGAGGGCGAGCGAAACCACGT
CCTCGATGCGCGAATCCTGGAGCCTCAGCGACAGAGATCGAATCCAATCAGGAACATCTT
TCATCTATTAACTCAACGAGAGGTCTCACCTCGATTGAAACACCATGCTAAAAGAATGTG
GAATGAGTCCCCAAAATATGATCCTGATTCAATTGAGTTAAGGTCTGCAGATGCTAAACT
TGATATTTTTTCATGGGCAGAATCACAGTCCCTGCATAGCTGGTCTGCCAAGTATTGCCC
TCTTTTGCCACCTCCTAGGTCAACTATTGCAGCTGCTTTCAGTCCAGATGGAAAAACACT
TGCGTCCACACATGGTGACCATACCGTGAAAATAATTGACTGCCAAACAGGGAAATGTTT
GAAGGTTTTGACTGGACATCGACGCACTCCTTGGGTGGTCAGGTATCATCCATTACATTC
TGACATCCTGGCTAGCGGAAGTTTGGATCATGAAGTTCGTCTATGGGATGCTAATACTTC
AGACTGTATTGGGTCACAAGACTTCCATCGGCCAATTGCTTCCATTGCATTTCATGGAAG
TGGGGAGATTTTGGCAGTTGCATCAGGTCACAAATTGTACATATGGAACTACAATAAGAG
AGATGGCACTTCTGTACCAGCCATCATACTAAAAACCCGCCGCTCGCTGAGAGCTGTTCA
TTTTCATCCGCGTGGGGCTCCATATCTTCTAACAGCAGAGGTTAATAATATAGAATCTGC
AGACTCACCGCTGACTCTGGCAAGATCCTCTGGATATCTAAATTACCCATCGGCCCTGCT
GGTGACAAACACTAATTCTAGATTCTGTACACTTCCTGAGTCCAATGTGGTGTCACCTTG
CTTACTGTGGCCTGCATACCTCAGAGATGGTGGAATTTTACATGTGCTCGGCAATGACAG
TAGTTCAACCATTGTGCAGCAGAGATCATCATTAGTTCAACCTTCCACATCAGATACTGC
AAATGTACAGCTTGAACAGTTTGCTACCCCTATGGATGTATGTCCGGGAGAGCCAACTTC
ATCTAATGACATACCCGATGCAGTAACTGTTCCTACTTCAAATGGAAATGAAATGCATGG
TGCTGGAGGCCAGTCTAACTCAAGACTGCAGGGCAGCAGCTCTACTAGTAATCTTGAGAG
GTTCAGTGCTAGAGATGATTTGCAAGTGTCTTCCCTGAGCAGGACTGACCCAATCCCATT
AACAGCAGGGCCTTCAGGATCCGATTTACACCGTGCTATGCCACTAAATATGCTCCTCAC
TGGCGGATTAGATGTTCAAATGTTCCTAAGAAATGTAGGAAGTGGACAGCAGGATCATTC
TCTCTTCGGCGACTCACGTAACTGGGAGGTACCATTTTTGCAGGGTTTCTTGATGGCCCC
AAACCATGCAGGTTTGCACCCTGCACTTGTGAACAATAGTGTCCTTGAAGACATGTCTAT
TGCTGGTACTGCAGGGACTAATAACTTGAAATCACCACACATGCGCAACTTTGGATGTCC
AGGTGCTTCATCTTCGATTCCCCTTACCACTGGCAGTTCTAGGGGACCAAATCGACGCTA
TGCTTCACGCTCTGTACCTGGGGTTGGGAATTTGCTCCTAGGTCCTCAAATTGACGAAGC
TGAAGCTCATGCTGTTTCACTAGGTGCTGGTTCTGAAATCACTGCGTCCATGCTTGCTCC
TGGTACTGAATTGCCTTGTACAGTGAAGCTCAGAATATGGCGGCACGGTACCAATGAACC
ATGTGTTCCTTTAGAACCTGAGGCATGCTGTCTGACGATTTCTCATGCCGTTCTCTGCAG
TGAAATGGGTGCCCATTTTTCCCCATGTGGACGATTTCTGGTAGCATGTGTTGCGTGTTT
GTTGCCACAAACAGAAGACGACCGTGGTAGCCAATTGCCTGTGTCTTACGAAGGGGCTGG
ATCATCACCAACTCGTCACCCGCTTCCCTCTCATCGAGTTATTTATGAGCTCCGGGTTTA
TTCCCTTGAGGCTGAGACATTTGGGGATATTCTTGCTTCCAGAGCAATACGGGCAGCACA
TTGCTTAACATCCATTCAGTTCTCACCTACATCCGAACACATACTTTTGGCATATGGTCG
TCGTCATAGCTCGCTCCTTAGGAGCATAGTTGTGGAAGGCGAAAATGGGGTTCCCGTATA
TACTATTTTGGAGGTATATAGAGTTTCAGATATGGAGCTTGTGAGAGTGCTTCCTAGCGC
TGAAGATGAAGTTAATGTTGCATGCTTTCATCCTTCACCAGGAGGTGGCCTTGTTTATGG
CACTAAGGAAGGGAAGCTCAGGATCCTTCAGCACAATGGCGCAGACATGACAAACATGGG
GGTGGGTTGCTTCATTGAGGAAAATATGGTTGAGGT