Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d024756_T006
CDS Infomation

cds chromosome:B73_RefGen_v4:10:86469245:86473929:-1 gene:Zm00001d024756 gene_biotype:protein_coding transcript_biotype:protein_coding description:Encodes alpha-helical IF (intermediate filament)-like protein.
Sequence

ATGTCTGTCTCGGAGAAGGTGGTGCTATCATCATCAGTTTCTTCGTCGTCAGATTTAGAT
CCGTTGCTGAAGGGTCTTACGGAGAAGAAGTTGAGCTTTAGGAGGAACGTGGTGTCATTG
GCAGCCGAGCTCAAGGATGTGAGGAGCAAGCTTGCTTCCCAGGAGCAGCTGTTTGTAAGG
GAATCTCAAACTAGAAAGCTTGTGGATACAAAAGCAAGGAGCATGGAAGAGGAAGTAAGC
AAGTTGCAGAAATGCTTACAGGACAAGGATGAGCAACTGCGTTCATCCACAAGTAGCACG
GAACAGTACCTCCATGAGTTGGATGATCTTAGAACACAACTGTCATTTACTCAAGCTACA
GCAGAAGCAAGTGCTGCATCAGCTAAGTCAGCCCAGATGCAGTGCTTATCATTGCTGAAA
GAGCTGAATGAGAAGGACATCTCGCTCAAAGAGCACGGGCTTCGAGTGAACAAGCTAGGT
GAGCAGCTTGATCTTCTCCAGAGGGAACTACAAGCAAGGGAGCTCTCGCAAATGCAACTT
AAAGATGAAGTTATAAGAATCGAGACCGACATCATGGATGCAGTTGCCAAAGCTGGGTCT
AGGTCTGACAAAGATAATGAGCTTTTAAAGATCTTATCTGATGTTTCACCAAGGAATGTC
CAGAACCTCAACAACCTTTTGAATGCTAAGGATACAGAAATTGCGAGGTTGAGAGAGGAA
ATCAGAATATTGTCTGCTCACTGGACGAACAAAACCAAGGAACTTGAGTCACATTTAGAA
AAGCACCGGAGAACTGATCAGGAGCTGAAGAAGAGGGTTCTAAAGCTTGAATTTTGCCTT
CAAGAATCCCAGTCTCAGATGCGAAAATTAAAGAGGATGGGCGAGAGAAGAGACAAGGCT
CTCAAGGAGCTCATGGACCAGGTGGCCACGAAGCAGCCAAACAGCATGTGCCATGGCAAC
AAGGAGAATTTCTGGGAGGGCCAGGGCTTCAAGTTCATCGTGTCTATGTCGATGCTGGCA
CTAGTGATCCTCGCAAAGCGATGA

Peptide Sequence

PEP ID

Zm00001d024756_P006
PEP Infomation

pep chromosome:B73_RefGen_v4:10:86469245:86473929:-1 gene:Zm00001d024756 transcript:Zm00001d024756_T006 gene_biotype:protein_coding transcript_biotype:protein_coding description:Encodes alpha-helical IF (intermediate filament)-like protein.
Sequence

MSVSEKVVLSSSVSSSSDLDPLLKGLTEKKLSFRRNVVSLAAELKDVRSKLASQEQLFVR
ESQTRKLVDTKARSMEEEVSKLQKCLQDKDEQLRSSTSSTEQYLHELDDLRTQLSFTQAT
AEASAASAKSAQMQCLSLLKELNEKDISLKEHGLRVNKLGEQLDLLQRELQARELSQMQL
KDEVIRIETDIMDAVAKAGSRSDKDNELLKILSDVSPRNVQNLNNLLNAKDTEIARLREE
IRILSAHWTNKTKELESHLEKHRRTDQELKKRVLKLEFCLQESQSQMRKLKRMGERRDKA
LKELMDQVATKQPNSMCHGNKENFWEGQGFKFIVSMSMLALVILAKR

Transcript Sequence

Transcript ID

Zm00001d024756_T006
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:86469245:86473929:-1 gene:Zm00001d024756 gene_biotype:protein_coding transcript_biotype:protein_coding description:Encodes alpha-helical IF (intermediate filament)-like protein.
Sequence

AGGCCATTAATTTCCGGGATCCTCGACTCGTTTCCCTTCCCACTACTCTGATCCTCTCTA
TCAGCGCCGCCTGCCTCCAAGTCCCTGAATCCACGGGCGACTCGCTTGCTCCCCCTGTTT
TCCTCGGCCGCCGGAGCGCGTCGCCTCCGAGCAGCAGCAGCACTCCGGCAGTCCCTGGTT
GTTCCTGGTGGTTCTTGCCTCCTCGTCTGGGTGGGTGGGTGGTGGAATAGCGTCGTCTTC
GCTGGAACCCACCTGCCTGCTCTTGCTCCGCTCGCGCAGTCGCGCTGGAGCTAAAGCTAC
TGATTGGTTCGTACTGACCAGCCAAGCCAAAGAGGGATTCTTTGGAGGCAACCAGAGCAT
CTTGTGGTCTTGTCCTCTCTGATTGGAAGAGAAAACGTGCTGTCTTGTGGCTTGCTATGT
CTGTCTCGGAGAAGGTGGTGCTATCATCATCAGTTTCTTCGTCGTCAGATTTAGATCCGT
TGCTGAAGGGTCTTACGGAGAAGAAGTTGAGCTTTAGGAGGAACGTGGTGTCATTGGCAG
CCGAGCTCAAGGATGTGAGGAGCAAGCTTGCTTCCCAGGAGCAGCTGTTTGTAAGGGAAT
CTCAAACTAGAAAGCTTGTGGATACAAAAGCAAGGAGCATGGAAGAGGAAGTAAGCAAGT
TGCAGAAATGCTTACAGGACAAGGATGAGCAACTGCGTTCATCCACAAGTAGCACGGAAC
AGTACCTCCATGAGTTGGATGATCTTAGAACACAACTGTCATTTACTCAAGCTACAGCAG
AAGCAAGTGCTGCATCAGCTAAGTCAGCCCAGATGCAGTGCTTATCATTGCTGAAAGAGC
TGAATGAGAAGGACATCTCGCTCAAAGAGCACGGGCTTCGAGTGAACAAGCTAGGTGAGC
AGCTTGATCTTCTCCAGAGGGAACTACAAGCAAGGGAGCTCTCGCAAATGCAACTTAAAG
ATGAAGTTATAAGAATCGAGACCGACATCATGGATGCAGTTGCCAAAGCTGGGTCTAGGT
CTGACAAAGATAATGAGCTTTTAAAGATCTTATCTGATGTTTCACCAAGGAATGTCCAGA
ACCTCAACAACCTTTTGAATGCTAAGGATACAGAAATTGCGAGGTTGAGAGAGGAAATCA
GAATATTGTCTGCTCACTGGACGAACAAAACCAAGGAACTTGAGTCACATTTAGAAAAGC
ACCGGAGAACTGATCAGGAGCTGAAGAAGAGGGTTCTAAAGCTTGAATTTTGCCTTCAAG
AATCCCAGTCTCAGATGCGAAAATTAAAGAGGATGGGCGAGAGAAGAGACAAGGCTCTCA
AGGAGCTCATGGACCAGGTGGCCACGAAGCAGCCAAACAGCATGTGCCATGGCAACAAGG
AGAATTTCTGGGAGGGCCAGGGCTTCAAGTTCATCGTGTCTATGTCGATGCTGGCACTAG
TGATCCTCGCAAAGCGATGAAGCAGCATCGCATACCCAATCTTGTGTAAAGAAGGTAGAG
ATTCCATCTATCGTTAGGTGAGCAACTAGCTCATAGCTTAAGCAGATGTCGATGTAGCGT
TTACATTAGTTTGTTGTTTGTATTCTTGGGCAGCTGTGCATAATGCATGGTCAGAAGTTG
CAGTCTGTAATCCGTAGTCTCTGCTAGGGCATGTGAACTCAGAAGGTGTCTTGTACTCAC
ATCTAGTTCATGTCAGCTCTTGAGCAGTCATGAATCTACATCTTGTAATTTCAGAGTAGC
TTC