Gene sequences

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SNP Detection
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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d024625_T003
CDS Infomation	cds chromosome:B73_RefGen_v4:10:80856478:80879001:1 gene:Zm00001d024625 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein MICRORCHIDIA 1
Sequence	ATGGATGGTAGCGGACGAGCTCTCGATTGTCGCAGCTTCTGGAAGGCCGGCGCGTACGAG GCCCCCACTGCTCCGACCAGGGAGTTCCAAGATGCTCTTGAGACGGGGGACTTCGACCGC GCGCGCGTGCACCCCAAGTTCCTCCACACCAACGCCACCTCCCACAAGTGGGCTTTCGGA GCTATAGCTGAACTTCTTGACAATGCAGTGGATGAGATAAGCAATGGTGCCACGTTCATA AAAGTTGATAAAAGCATCAATTTGAAAGACAATAGCTCAATGCTAGTTTTCCAAGATGAT GGAGGCGGCATGGATCCTGAAGGTGTCCGTCGATGCATGAGTTTAGGATTCTCAACCAAG AAATCTAAGACCACTATTGGCCAGTATGGAAATGGCTTTAAGACAAGCACAATGAGACTT GGTGCAGATGCAATTGTTTTTACTCGTGCTATCCGAGGAGGTAATGTTACATTGAGTATA GGTTTGCTCTCCTACACTTTTTTGAGAAAGACATTGAAGGATGACATAGTTGTTCCAATG CTTGATTTTAAGATCCAAGATGGGGACATTGTACCGTTGGTGTATGGTTCACAGGGTGAT TGGGATAGTAGTCTGAAGATAGTACTTGATTGGTCCCCTTTTTCTTCGAAGGAAGAACTT CTGCAGCAGTTTCAGGATGTTGGTAGTCATGGAACTAAAGTGGTAGTGTACAATTTATGG ATGAATGATGATGGCCTTTTGGAACTTGACTTTGAGGATGATGATGAGGACATATTACTT AGAGATCAAGGTAGCGCAAGTGGGGGGTTCTCAAAGAGTCAGAAAGAAATTGTTAAGCAA CACATATCCCACAGGCTCAGATTTTCATTGCGAGCTTATACCTCCATCCTTTACCTCAGG AAGTTTGATAATTTCCAAATTATATTAAGAGGAAAACCTGTTGAGCAGATATTTATCACT GATGAACTAAAATTTAAGAAAGTCGTTACTTACAGACCTCAAGCAGCACATGATTCCCAA GTGGCCTCGGTAAAAATTGATATTGGTTTTGCAAAGGAGGCCCCTATTTTGGGCATTTTT GGGATGAATGTCTACCACAAAGATCGACTTATAATGCCTTTCTGGAAGGTCCTTCAAGAA GGATCTAGCAGAGGGAGAAGTGTGGTTGGTGTACTTGAAGCAAATTTTATTGAACCAGCA CATGACAAACAAGATTTTGAGAGGACACCATTGTTTATTCGGCTAGAAACAAGACTTAGA CAAATTATTATTGATTTCTGGAAAGAAAGGTGCCATTTGATTGGTTACCAGCCAATGGAT CCACATTTAAGATCCCAGTATAAGGCCACCCTCAAAGAATCGGTTGGTCCTGCTCCAGTT CACCATAAAGCTTCCAGTGTCCGAAGAACTGGAGGGCTTTCGTCAAATTTACTACCAGAG ACATATGACGACATAACAACTGTTGGGTTAGCAAATAATGGTTCTCATTTGCAATCGTCT GATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGAGGATCTGGTGGAGATT GGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAGAAGCTGAGTGAAGAAAACATCGCT CTGTTTTCAAGGCGTGAAGAGCTTCGACAACGAGATACACAACTGAAGCAGACGGTATGG ATATCATGCTGA

Peptide Sequence

PEP ID	Zm00001d024625_P003
PEP Infomation	pep chromosome:B73_RefGen_v4:10:80856478:80879001:1 gene:Zm00001d024625 transcript:Zm00001d024625_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein MICRORCHIDIA 1
Sequence	MDGSGRALDCRSFWKAGAYEAPTAPTREFQDALETGDFDRARVHPKFLHTNATSHKWAFG AIAELLDNAVDEISNGATFIKVDKSINLKDNSSMLVFQDDGGGMDPEGVRRCMSLGFSTK KSKTTIGQYGNGFKTSTMRLGADAIVFTRAIRGGNVTLSIGLLSYTFLRKTLKDDIVVPM LDFKIQDGDIVPLVYGSQGDWDSSLKIVLDWSPFSSKEELLQQFQDVGSHGTKVVVYNLW MNDDGLLELDFEDDDEDILLRDQGSASGGFSKSQKEIVKQHISHRLRFSLRAYTSILYLR KFDNFQIILRGKPVEQIFITDELKFKKVVTYRPQAAHDSQVASVKIDIGFAKEAPILGIF GMNVYHKDRLIMPFWKVLQEGSSRGRSVVGVLEANFIEPAHDKQDFERTPLFIRLETRLR QIIIDFWKERCHLIGYQPMDPHLRSQYKATLKESVGPAPVHHKASSVRRTGGLSSNLLPE TYDDITTVGLANNGSHLQSSDQAQENNMDSEVLDEDLVEIGSSGVLDPSFIEKLSEENIA LFSRREELRQRDTQLKQTVWISC

Transcript Sequence

Transcript ID	Zm00001d024625_T003
Transcript Infomation	cdna chromosome:B73_RefGen_v4:10:80856478:80879001:1 gene:Zm00001d024625 gene_biotype:protein_coding transcript_biotype:protein_coding description:Protein MICRORCHIDIA 1
Sequence	GCGACGGCGAGCAGCGGTGTCGATTTTTAGGGCATTGTGACTTGTTGAGAAATTCGTAGG GGTATACGAAAACCTCTCCGCCGAACTCCTGCAGATCCTAATTAACCTCCCCCTGCTGCA CCAATTGCCGCTGGCGATGGATGGTAGCGGACGAGCTCTCGATTGTCGCAGCTTCTGGAA GGCCGGCGCGTACGAGGCCCCCACTGCTCCGACCAGGGAGTTCCAAGATGCTCTTGAGAC GGGGGACTTCGACCGCGCGCGCGTGCACCCCAAGTTCCTCCACACCAACGCCACCTCCCA CAAGTGGGCTTTCGGAGCTATAGCTGAACTTCTTGACAATGCAGTGGATGAGATAAGCAA TGGTGCCACGTTCATAAAAGTTGATAAAAGCATCAATTTGAAAGACAATAGCTCAATGCT AGTTTTCCAAGATGATGGAGGCGGCATGGATCCTGAAGGTGTCCGTCGATGCATGAGTTT AGGATTCTCAACCAAGAAATCTAAGACCACTATTGGCCAGTATGGAAATGGCTTTAAGAC AAGCACAATGAGACTTGGTGCAGATGCAATTGTTTTTACTCGTGCTATCCGAGGAGGTAA TGTTACATTGAGTATAGGTTTGCTCTCCTACACTTTTTTGAGAAAGACATTGAAGGATGA CATAGTTGTTCCAATGCTTGATTTTAAGATCCAAGATGGGGACATTGTACCGTTGGTGTA TGGTTCACAGGGTGATTGGGATAGTAGTCTGAAGATAGTACTTGATTGGTCCCCTTTTTC TTCGAAGGAAGAACTTCTGCAGCAGTTTCAGGATGTTGGTAGTCATGGAACTAAAGTGGT AGTGTACAATTTATGGATGAATGATGATGGCCTTTTGGAACTTGACTTTGAGGATGATGA TGAGGACATATTACTTAGAGATCAAGGTAGCGCAAGTGGGGGGTTCTCAAAGAGTCAGAA AGAAATTGTTAAGCAACACATATCCCACAGGCTCAGATTTTCATTGCGAGCTTATACCTC CATCCTTTACCTCAGGAAGTTTGATAATTTCCAAATTATATTAAGAGGAAAACCTGTTGA GCAGATATTTATCACTGATGAACTAAAATTTAAGAAAGTCGTTACTTACAGACCTCAAGC AGCACATGATTCCCAAGTGGCCTCGGTAAAAATTGATATTGGTTTTGCAAAGGAGGCCCC TATTTTGGGCATTTTTGGGATGAATGTCTACCACAAAGATCGACTTATAATGCCTTTCTG GAAGGTCCTTCAAGAAGGATCTAGCAGAGGGAGAAGTGTGGTTGGTGTACTTGAAGCAAA TTTTATTGAACCAGCACATGACAAACAAGATTTTGAGAGGACACCATTGTTTATTCGGCT AGAAACAAGACTTAGACAAATTATTATTGATTTCTGGAAAGAAAGGTGCCATTTGATTGG TTACCAGCCAATGGATCCACATTTAAGATCCCAGTATAAGGCCACCCTCAAAGAATCGGT TGGTCCTGCTCCAGTTCACCATAAAGCTTCCAGTGTCCGAAGAACTGGAGGGCTTTCGTC AAATTTACTACCAGAGACATATGACGACATAACAACTGTTGGGTTAGCAAATAATGGTTC TCATTTGCAATCGTCTGATCAAGCACAAGAGAACAATATGGACTCAGAAGTTTTGGATGA GGATCTGGTGGAGATTGGCTCCTCTGGTGTCCTAGATCCTAGTTTTATTGAGAAGCTGAG TGAAGAAAACATCGCTCTGTTTTCAAGGCGTGAAGAGCTTCGACAACGAGATACACAACT GAAGCAGACGGTATGGATATCATGCTGAGCCATTAAAAAGCGAAGTAAAAAAAATATCAT CTTTCTGTTCAGAGCTGAATGCGGCTTCTTTGTAGATTGGAGACCTGGAGCTTGAGCTGG AGGAAACAAAAAAGAAGTGCGGTCAGCTTGCTGCTCAGCTCAAGGCATGGAAGAACCAGC AGCATCTACCCTAAATGTGAAGGGCATCATTAAGACCGAGGACACGGAGGTACACGACAA CGACCAATACTGACAGAAAACCGAAGGTTACAAGGAAGCACGGATGCATATAATGTCTGT CTAGTGGGCTGGCTAACTCATGGTTGAGTTGTTAAAAAGAAGTTTAGCATGTAAATCTTA GGCGTGTGTGCTACTTAGCTACTAGACAGAATGGTTGTCATGTGCAAGCAAGGAAGATGA CTTGGGTGATTCCTGCTGTTAATTTGCTATGCAAAATGTCACGTAAGGCCCTTATGATCC AGCCTTGAGCATCAAATAAAACTGTAGAACTC