Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d024546_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:10:77700138:77703390:-1 gene:Zm00001d024546 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:late hypocotyl elongation protein ortholog1 description: circadian clock associated2
Sequence	ATGCCGGCTAGGGGAGAGGGGAGGCCGGCGAAGGAGAGGGTAGACCAGTTGGAAAAGGAA GCTATTAACAATGGTACTTCTCCGGGGCAAGCCCATGACATTGACATACCGCCACCACGG CCTAAAAGAAAGGCTAACAGTCCATATCCTCGAAAAAGTGGTCTCAGCTCTGAGACACCA ACCAAAGAACTTCCAAGTGACAAGTCAACAAAACCAAATATGCCCTTGAGCAATGAGAAT GTACTAATGGCAGGTGATGCATCTCTTCAGAAATTTCAAAGGAAGGAGTTGTCTGGAAAA GAAAGTTGCTCGGAAGTTCTTAATCTCTTCCGTGATGCCCCATCTCCATCATTTTCTTCA GTTAACAAAAGCTCTTCAAATCATGGTGCACCGATTGAGGCAAGTAAAACAAAAATCCGA GATATGACCATTATGGAAAATAGTTCTCTTAACCCCAACATGCAAGAGGATGTAAAGGAA ATCAATGATCAGGAGATGGAAAGGCTTAATGGTACCCAAATCAGCTCTAAATGTGAACAC TCTCATGAGGGATATTTGGACATCTCAATGCAACAAATGAAGCTAAAGCCAGAGTCTGTG GAGACAACATATGTGGACAAACAAACCGCAAGAGCTTCACACTCCCTAGCGGAGAGAACT GGGACAACTAGCATTCCGGTCACTGCAACTGAAGAAACTCATTCTGTTCTAACAAGTGAT CAAGTGGGAATCAATGGAAGCATGAACCCATCCATCCATCCAATGTTTCCTGCAGATCCA AAATTTGATAGCAGTGCCACACCACAGCCTTTTCCTCATAATTATGCTGCCTTTGCTCCA ATGATGCAGTGCAACTGCAACCAAGATACCCACAGATCATTGGTCAACATGTCATCCACC TTCTCCAGCATGCTTGTTTCCACGTTGTTGTCAAACCCTGCCATCCATGCAGCTGCCAGG CTCGCAGCATCATACTGGCCAGCAGCTGAAGGTAACACTCCGATTGATCCGAATCAAGAA AATCTTGCAGATGGTGTTCAAGGAAGGAGCATAGGGTCTCCTCCAAGCATGGCTTCTATT GTAGCAGCTACAGTTGCTGCAGCATCTGCATGGTGGGCAACACAAGGTCTTCTCCCTTTC TTCGCCCCACCCATGGCTTTTTCATTTGTGCCAGCTCCCAGTGCTGCCTTCCCCACAGTT GATGTTCCACGACCTTCAGAGAAAGATAGAGATTGCCCAGCTGAAAATGCACAGAAGGAA TGCCAAGAAGCTCGAAAACAGGGACAGTTTGAAGGTTTCAGAGTTGCCGCTTCTTCAGAG TATGATGGGAGTGGAAAAGGCGAGGTGTCTGTCCACACAGAGTTAAAGATATCTCCTGTC CAGAATGCTGATGCCACGTCTGCCGCAGGAGCTGACACGACTGATGCATTCATGAATAAG AAAAAGCAGGACCGCTCTTCATGCGGTTCTAACACACCTTCAAGTAGTGATGTAGATGTG GACAATGTCCCTGAGAAAGAGGGCAATGGTAATGAGAAGGCGAAGCAAGCCTCCTGCAGC AACTCTTCAGCTGGTGACACTAACCACCGCAGATTTAGAAGCAGTGGAAGCACGAGTGAT TCATGGAAGGAAGTTTCCGAAGAGGGTCGTCTGGCTTTCCATGCGCTGTTCAGTAGAGAA AAGCTTCCGCAAAGCTTTTCTCCCCCACAAGCAGAAGGCTCGAAGGAAGTTGGCAAGGAG GAGGAAGATGAAGTCACCACAGTGGCAGTTGACCTCAACAAGAGTACCACAAGCATTGAT CATGACCTCGACACAATTGGTGAGCCAAGGGCTTCCTTTCCCAATGAACTGTCGCCCCTG AAGCTGAAATTGCGCCGAACAGGCTTCAAACCATACAAGAGATGTTCTGTGGAAGCGAAG GAGAATAGGGTGCCGGCTAGCGACGAGGTTGGTACCAAGAGGATTCGTCTTGATAGTGAA GCATCAACATGA

Peptide Sequence

PEP ID	Zm00001d024546_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:10:77700138:77703390:-1 gene:Zm00001d024546 transcript:Zm00001d024546_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:late hypocotyl elongation protein ortholog1 description: circadian clock associated2
Sequence	MPARGEGRPAKERVDQLEKEAINNGTSPGQAHDIDIPPPRPKRKANSPYPRKSGLSSETP TKELPSDKSTKPNMPLSNENVLMAGDASLQKFQRKELSGKESCSEVLNLFRDAPSPSFSS VNKSSSNHGAPIEASKTKIRDMTIMENSSLNPNMQEDVKEINDQEMERLNGTQISSKCEH SHEGYLDISMQQMKLKPESVETTYVDKQTARASHSLAERTGTTSIPVTATEETHSVLTSD QVGINGSMNPSIHPMFPADPKFDSSATPQPFPHNYAAFAPMMQCNCNQDTHRSLVNMSST FSSMLVSTLLSNPAIHAAARLAASYWPAAEGNTPIDPNQENLADGVQGRSIGSPPSMASI VAATVAAASAWWATQGLLPFFAPPMAFSFVPAPSAAFPTVDVPRPSEKDRDCPAENAQKE CQEARKQGQFEGFRVAASSEYDGSGKGEVSVHTELKISPVQNADATSAAGADTTDAFMNK KKQDRSSCGSNTPSSSDVDVDNVPEKEGNGNEKAKQASCSNSSAGDTNHRRFRSSGSTSD SWKEVSEEGRLAFHALFSREKLPQSFSPPQAEGSKEVGKEEEDEVTTVAVDLNKSTTSID HDLDTIGEPRASFPNELSPLKLKLRRTGFKPYKRCSVEAKENRVPASDEVGTKRIRLDSE AST

Transcript Sequence

Transcript ID	Zm00001d024546_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:10:77700138:77703390:-1 gene:Zm00001d024546 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:late hypocotyl elongation protein ortholog1 description: circadian clock associated2
Sequence	ATGCCGGCTAGGGGAGAGGGGAGGCCGGCGAAGGAGAGGGTAGACCAGTTGGAAAAGGAA GCTATTAACAATGGTACTTCTCCGGGGCAAGCCCATGACATTGACATACCGCCACCACGG CCTAAAAGAAAGGCTAACAGTCCATATCCTCGAAAAAGTGGTCTCAGCTCTGAGACACCA ACCAAAGAACTTCCAAGTGACAAGTCAACAAAACCAAATATGCCCTTGAGCAATGAGAAT GTACTAATGGCAGGTGATGCATCTCTTCAGAAATTTCAAAGGAAGGAGTTGTCTGGAAAA GAAAGTTGCTCGGAAGTTCTTAATCTCTTCCGTGATGCCCCATCTCCATCATTTTCTTCA GTTAACAAAAGCTCTTCAAATCATGGTGCACCGATTGAGGCAAGTAAAACAAAAATCCGA GATATGACCATTATGGAAAATAGTTCTCTTAACCCCAACATGCAAGAGGATGTAAAGGAA ATCAATGATCAGGAGATGGAAAGGCTTAATGGTACCCAAATCAGCTCTAAATGTGAACAC TCTCATGAGGGATATTTGGACATCTCAATGCAACAAATGAAGCTAAAGCCAGAGTCTGTG GAGACAACATATGTGGACAAACAAACCGCAAGAGCTTCACACTCCCTAGCGGAGAGAACT GGGACAACTAGCATTCCGGTCACTGCAACTGAAGAAACTCATTCTGTTCTAACAAGTGAT CAAGTGGGAATCAATGGAAGCATGAACCCATCCATCCATCCAATGTTTCCTGCAGATCCA AAATTTGATAGCAGTGCCACACCACAGCCTTTTCCTCATAATTATGCTGCCTTTGCTCCA ATGATGCAGTGCAACTGCAACCAAGATACCCACAGATCATTGGTCAACATGTCATCCACC TTCTCCAGCATGCTTGTTTCCACGTTGTTGTCAAACCCTGCCATCCATGCAGCTGCCAGG CTCGCAGCATCATACTGGCCAGCAGCTGAAGGTAACACTCCGATTGATCCGAATCAAGAA AATCTTGCAGATGGTGTTCAAGGAAGGAGCATAGGGTCTCCTCCAAGCATGGCTTCTATT GTAGCAGCTACAGTTGCTGCAGCATCTGCATGGTGGGCAACACAAGGTCTTCTCCCTTTC TTCGCCCCACCCATGGCTTTTTCATTTGTGCCAGCTCCCAGTGCTGCCTTCCCCACAGTT GATGTTCCACGACCTTCAGAGAAAGATAGAGATTGCCCAGCTGAAAATGCACAGAAGGAA TGCCAAGAAGCTCGAAAACAGGGACAGTTTGAAGGTTTCAGAGTTGCCGCTTCTTCAGAG TATGATGGGAGTGGAAAAGGCGAGGTGTCTGTCCACACAGAGTTAAAGATATCTCCTGTC CAGAATGCTGATGCCACGTCTGCCGCAGGAGCTGACACGACTGATGCATTCATGAATAAG AAAAAGCAGGACCGCTCTTCATGCGGTTCTAACACACCTTCAAGTAGTGATGTAGATGTG GACAATGTCCCTGAGAAAGAGGGCAATGGTAATGAGAAGGCGAAGCAAGCCTCCTGCAGC AACTCTTCAGCTGGTGACACTAACCACCGCAGATTTAGAAGCAGTGGAAGCACGAGTGAT TCATGGAAGGAAGTTTCCGAAGAGGGTCGTCTGGCTTTCCATGCGCTGTTCAGTAGAGAA AAGCTTCCGCAAAGCTTTTCTCCCCCACAAGCAGAAGGCTCGAAGGAAGTTGGCAAGGAG GAGGAAGATGAAGTCACCACAGTGGCAGTTGACCTCAACAAGAGTACCACAAGCATTGAT CATGACCTCGACACAATTGGTGAGCCAAGGGCTTCCTTTCCCAATGAACTGTCGCCCCTG AAGCTGAAATTGCGCCGAACAGGCTTCAAACCATACAAGAGATGTTCTGTGGAAGCGAAG GAGAATAGGGTGCCGGCTAGCGACGAGGTTGGTACCAAGAGGATTCGTCTTGATAGTGAA GCATCAACATGAGCGATTTCTACATGGTTACCGCTCGGACTTCCTCTGCCGCCATGAAGT TTATGACAAAGTTGTATTTACATCTAAACTAGTATAGGACTTAAAGACCTTGCAATGCAA TGCTTCATGAAACTGTTGTGTGCTGTATTTTAGTACTTGTGAAGCAGCCCGGTAGACTGC TTTTAAACCTTTATCTCGTAGACTCTGATTTAAGCATCAAGCAACTATTGAACTTTATAT TTTTGGCGGGAAGGAAAATAATTATTTTTTGATTT