Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d024544_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:10:77538421:77543821:1 gene:Zm00001d024544 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGCCCTCCTCCACCTCCGCCGGCGGCGGCGCCATTCCCGCCGGCCCACCGTCGACGCTC
TCTCCGAACGCGGCTCCCTACACCTTCCTCGCGCGTCAGTCCCGCGCCCCACCCGGACGC
CTCCAAGATGGTGATGCTCCAAGGTTGATTGATAATAACTTTGTGTTGTATGGAGAGGAC
AACAGTTCTTATTCGGTGCCACTGGCAGCACAATCAGGAATGAAGCAGAGTGACACTGTT
TACTCAAGCAGCTCGCATGGAACACACCAAGGTCAGCCAAGCTCCGCACGTGGAATTCCT
GTCGGTGTTTATCCATCTCCAACGTCCTCAATTGCGATAGTTTCAGAGCCATCAGTGACC
ATAGGTTCTGATTTCAACCAGCACCTTGTTCCATTGACCTCAGGTAAGGGAAGCAGACAG
CCAAGGGTGACGATCAGAAGCCCTCCAAATAAGACTTCAGAAACTAACAACACCATTTTT
GGTTCTGTTAGCAAATTGGCTATAAGGAAAAATGATGAGTCCAACAAAGAGACTGGGAAA
CATGTCTCCTTCAGCAGGAACTTACAACTCGGTAGTCCTGCTCATGGAAATGGCAATTCA
AATGGCGCCATGGCTCTTTCGAAAGAGCTAAATCCTGATTTTGGCGTGAAGCCTCTTGTC
TTGTCTGCATGCACTAGCCCATGTGTTACAATGGCTGATGATTTGAACCCTGATCCATCG
GAGTGTTCTGTGGATTCACCTTGCTGGCGAGGGACAGCTTCTCGCCTCTCTCCATTTGAT
GGCCTTCCAACATCAATTGTGCAATCAGTGAAACAGGAACTAGTGCCTATTGATGCAGGG
AAGGAACAAAGCTCTACCACTGATTGCGAGGCTCCAACTAAACTTCAGAATTTGGTCTGT
TCAAAGAGTACACAAAACCATTCCCAATCCCATGTTAAATTGGGTCTGTCCAAAGAACCT
GGAGACATTTGTGCAAATATCACACAATATTCCCATCGAAAGAAGCACTTTGCAGAACAT
AGTGCAGTGAATTGCAATGCAGACCAACACTGTTTAGCAGTGATAGATGATTGCATAAAG
CGATCTGGCCTAAACTCTGCTGCTCCTGATTTTGTTCCCTTAGCTGTTAGGAAATCAAAT
ACCAGCGATGGTTCCTGTTCTTCATCTGGAACGAACGTATCGGGAATTCTGAAAGAGATC
AATAGTTTGTCGGAGGTGTTATGCAATAATTATTCTGATGAAATTAAGCTAGAGGAGCAT
GACCACAGCCTCCTCCAATCAGTAATTGGGAATCTTCAGAGTTATCTTCACAAAGCAAGC
AAGGTTCCTGCTATGGTTGATTCTGACAAGTCAGGGGGACTAAAGGCTTGCTATGCTCAG
AATGCAGTTTCAAAACCTGTCGCAGGAGACTACAACGGTAGTTTCACTGCCGATAATGGA
AAAGGCATAAGTATCTCTAATCTTGGTGATTCTAGTCCTTTGGTCGGTGACTTAAGGAAA
AAGAGCGTGACAGGGTACCAGGTAACATTTCCTACACGTTTAAGAAAGTTTTGTTATTTT
GAACGTGGAGAGTATCTGCATTTTGTCTCCCAGTAA

Peptide Sequence

PEP ID

Zm00001d024544_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:10:77538421:77543821:1 gene:Zm00001d024544 transcript:Zm00001d024544_T003 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MPSSTSAGGGAIPAGPPSTLSPNAAPYTFLARQSRAPPGRLQDGDAPRLIDNNFVLYGED
NSSYSVPLAAQSGMKQSDTVYSSSSHGTHQGQPSSARGIPVGVYPSPTSSIAIVSEPSVT
IGSDFNQHLVPLTSGKGSRQPRVTIRSPPNKTSETNNTIFGSVSKLAIRKNDESNKETGK
HVSFSRNLQLGSPAHGNGNSNGAMALSKELNPDFGVKPLVLSACTSPCVTMADDLNPDPS
ECSVDSPCWRGTASRLSPFDGLPTSIVQSVKQELVPIDAGKEQSSTTDCEAPTKLQNLVC
SKSTQNHSQSHVKLGLSKEPGDICANITQYSHRKKHFAEHSAVNCNADQHCLAVIDDCIK
RSGLNSAAPDFVPLAVRKSNTSDGSCSSSGTNVSGILKEINSLSEVLCNNYSDEIKLEEH
DHSLLQSVIGNLQSYLHKASKVPAMVDSDKSGGLKACYAQNAVSKPVAGDYNGSFTADNG
KGISISNLGDSSPLVGDLRKKSVTGYQVTFPTRLRKFCYFERGEYLHFVSQ

Transcript Sequence

Transcript ID

Zm00001d024544_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:77538421:77543821:1 gene:Zm00001d024544 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ACCGGCCTCGCCGGCGATGCCCTCCTCCACCTCCGCCGGCGGCGGCGCCATTCCCGCCGG
CCCACCGTCGACGCTCTCTCCGAACGCGGCTCCCTACACCTTCCTCGCGCGTCAGTCCCG
CGCCCCACCCGGACGCCTCCAAGATGGTGATGCTCCAAGGTTGATTGATAATAACTTTGT
GTTGTATGGAGAGGACAACAGTTCTTATTCGGTGCCACTGGCAGCACAATCAGGAATGAA
GCAGAGTGACACTGTTTACTCAAGCAGCTCGCATGGAACACACCAAGGTCAGCCAAGCTC
CGCACGTGGAATTCCTGTCGGTGTTTATCCATCTCCAACGTCCTCAATTGCGATAGTTTC
AGAGCCATCAGTGACCATAGGTTCTGATTTCAACCAGCACCTTGTTCCATTGACCTCAGG
TAAGGGAAGCAGACAGCCAAGGGTGACGATCAGAAGCCCTCCAAATAAGACTTCAGAAAC
TAACAACACCATTTTTGGTTCTGTTAGCAAATTGGCTATAAGGAAAAATGATGAGTCCAA
CAAAGAGACTGGGAAACATGTCTCCTTCAGCAGGAACTTACAACTCGGTAGTCCTGCTCA
TGGAAATGGCAATTCAAATGGCGCCATGGCTCTTTCGAAAGAGCTAAATCCTGATTTTGG
CGTGAAGCCTCTTGTCTTGTCTGCATGCACTAGCCCATGTGTTACAATGGCTGATGATTT
GAACCCTGATCCATCGGAGTGTTCTGTGGATTCACCTTGCTGGCGAGGGACAGCTTCTCG
CCTCTCTCCATTTGATGGCCTTCCAACATCAATTGTGCAATCAGTGAAACAGGAACTAGT
GCCTATTGATGCAGGGAAGGAACAAAGCTCTACCACTGATTGCGAGGCTCCAACTAAACT
TCAGAATTTGGTCTGTTCAAAGAGTACACAAAACCATTCCCAATCCCATGTTAAATTGGG
TCTGTCCAAAGAACCTGGAGACATTTGTGCAAATATCACACAATATTCCCATCGAAAGAA
GCACTTTGCAGAACATAGTGCAGTGAATTGCAATGCAGACCAACACTGTTTAGCAGTGAT
AGATGATTGCATAAAGCGATCTGGCCTAAACTCTGCTGCTCCTGATTTTGTTCCCTTAGC
TGTTAGGAAATCAAATACCAGCGATGGTTCCTGTTCTTCATCTGGAACGAACGTATCGGG
AATTCTGAAAGAGATCAATAGTTTGTCGGAGGTGTTATGCAATAATTATTCTGATGAAAT
TAAGCTAGAGGAGCATGACCACAGCCTCCTCCAATCAGTAATTGGGAATCTTCAGAGTTA
TCTTCACAAAGCAAGCAAGGTTCCTGCTATGGTTGATTCTGACAAGTCAGGGGGACTAAA
GGCTTGCTATGCTCAGAATGCAGTTTCAAAACCTGTCGCAGGAGACTACAACGGTAGTTT
CACTGCCGATAATGGAAAAGGCATAAGTATCTCTAATCTTGGTGATTCTAGTCCTTTGGT
CGGTGACTTAAGGAAAAAGAGCGTGACAGGGTACCAGGTAACATTTCCTACACGTTTAAG
AAAGTTTTGTTATTTTGAACGTGGAGAGTATCTGCATTTTGTCTCCCAGTAAGTACAGAT
TACAAGATATGTGGTGAACCGTCTGTTCGGTAACTTTTCTAATAATCATGTAAAACAATT
TGCTGCTACCATTTTCTCAGAAAATATCTTATGATTTATTTCCTATTTCTTTCGTACCAT
TGTGTTAAAAAAACTTGACCGGAGGGGGTTAAGCCGCTCCCAGGACATTCATATAAGAAG
TCACGGAGCCACAAGTTCCGGTCGAGAAAACCCCCGAACCGAGTTTTCGTAGCCCGAGAG
TGGACGAGAAAACCCCCAAACCATTTTTTAACCCAGGTCTGAAAATTCGTTTCCGCGAGG
AATTGAATTCAGAACCTGAGAGTTGCTACTACACCACCTAACTAGTTAGACCAAGGGCTG
TTCGCATACCATTGTATTAAGATGCAACAGGAGCTGATTGATGAACTTGAATGGTATTAC
TTTATCTTACCCTTTCTAACAAGGTACTCTTAATGATTTCAGCAGCCTGCACTCAGCAAT
TTTCCAAAGGAGCTCTCATGGGAGGAGCGGTCACAGGCTCTTATCTATAAGAAACTGTGG
TTTGATGCAGAACGCACAAACTGTGCTTTGAAGTATCAACTTAAACAAACGCGTGTGGAA
ATCGACCTAGAGTCAAGCACAGCTCATATTGGCGGGGGTCCAAGAAACAGTTCTTTCCAT
CTATGTGATGTGGGTGTAGATCCAAGTAGTTCCTATGGATCTGCCATAACTTGCCCACCG
ATGATGCTCAAGGGCCATCCTGGAGAAAGAAAGAGTCATAACCTCCTTTCTGCTGCTGAC
CACATTCAGTCAGGAGACAGCAGTGCTCTGTCAAGACCAAAAGGTTACATAGCCGTGCCA
GAGAATATTGAGGATGGATATTTCTTGTCAGGGCCGGAAGAAACCGGTGTCCGCCGCCAT
GCACGTCCTGGTCTACAAAGTAGGCCCCTCGGAAGGTTGAACACAAGTACGTCAGATGGA
ATGTCATCCTCGTATGTCACTGGAAGGGATGACATTCTGCGTGGCAGCTGCGAGTTTGGA
TCTTCAGATTGGGAGCATGTGTTGAAGGAAGAAATCGGCTCAACCTAAAAAAAAATTTGA
AGGGATCTGGCAATAAGTATATAGTACTGTACATGTATGAGCTACCACGAAGCTAGGAAT
TCGGATCTTCTTGATTTTTTTTTTGCTTGACAAGGCTGATGAATGGGCACTGGTTGGAAT
GGTGCTGCTCTAGCCTACGGAAAACCCCTTATTTATCTTGTCTTGGGAACAATGCCTATA
AATCATAACTTGGATGG