Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d024424_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:10:70414238:70420011:-1 gene:Zm00001d024424 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HIP description:Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
Sequence	ATGGGGAAGCCCCCGGGGGCCAGGAATCCGGCGGAGGCGGAGGCCGATGGCGACGACGCG GTGTTCCTCGAGCTGTCGCGGGAGCTCAAGGAGGAGGGCACGCGGCTGTTCAACAGGCGG GACTTCGAGGGCGCGGCGTTCAAGTACGACAAGGCGGTCCAGCTGCTCCCCGCCGGGCGG CGCGTCGAGGCGGCGCACCTCCGGGCCAGCATCGCGCACTGCTACATGCGCATGAGCCCC GCGGAGTTCCACCACGCCATCCACGAGTGCAACCTCGCGCTGGAGGCGGTGCCCAGGTAC AGCAGGGCGTTGCTCCGCCGGGCCGCCTGCTTCGAGGCGCTGGGCAGGCCCGACCTGGCG TGGGGGGACATCCGGACGGTGCTGCGTTGGGAGCCCGGCAACCGCGCCGCGCGCCAGATC TCGGACAGGGTGCGTACGGCATTGGAGGATAAGGGTATCTCGGTTGCCTTGGATGTGCTG CCAGAGGATGAGAATGAGATTGCTAGCGCCAAAGGAGAGGAGAGGAAGAAATCTCGTAAT AAGCGTTTTGATTCGGTTGCGGGGGGGCGGGAGGGTGAAAATGGTATTGCGCTACTAGAA TCTGCTTCCACGGAGAAGCAGGCTGGCCCGAGACAAACAAATGGAACAGGGAATCATCAG GATCATACTGAAGATAGTGAATCCAATGGTCTCGAGAAGCTAGAACAAAGTACTGAGACG GGAGAGAAGGACATGGGCAAAAAGCGAGGTGCACACGCTGCTGGAAAGAAACCGAGGTGT GGTGAGAGCAAGCAGCAAAAGCATTCTGCAGTGAATCATTGTCAGGACAACATTGGTGCC AAGGAGGAAGTCATGAAGGATGTGAAGCTGGTCTTTGGAGAGGACATCAGGTGTGCTCAG ATGCCAGCTAACTGCTCTCTGCCACAATTGAGAGAAATAGTTCAGAACAAATTCCCGTCA CTGAAAGCGTTTCTGATCAAGTATAAAGACAAAGAAGAAGACTTGGTGACGATAACCTTG TCTGAGGAGCTAAGCTGGGCAAGCAATCTGGCAGTTTCGCAAGTGCCAATCCGATTCTAT GTTGTAGAGGTTAATCATGTTCAAGAGCTTGGTGTGGATGGGGTCAGGAGACGTCCTTCC TTTGCCACGTTAGAGAGAAATCGTGATATCATGTTGGATAATGGGACCATTGGGCATGAT GTTGAGCATAAGCATTACGCTGATGACTGGATGGTACAGTTTGCACAGATATTTAAGAAT CATGTTGGTTTTAGTTCTGATGCATATCTGGATCTCCATGACCTTGGCCTGAGACTGCAC TATGAGGCTATGGAAGACACAATACAAAGAGAAGAGGCACAGGAAATATTTGAGGTTGCA GAGTCCAAATTTAAGGAGATGGCAGCACTGGCATTGTTTAACTGCGGCAATGTCCACATG TCTCGTGCAAGAAGAAGGCCATGCTTGGCTGAAGATCCTTTACAGGAATTTATACTTGAG AAAGTCAATGTTTCATATGATTGGGCATGCACAGAATATGCCAAAGCTGGTGCAATGTTT GAAGAAGCTGTCAAAACTAAATCTGACTTTTTTGAAGGACTTATTGCTCTTGGCCAACAG AAATTCGAGCAGGCCAAACTCTCTTGGTATTACGCTCTTGCATGCAAGATAAATATGGAA ACTGAAGTTTTGGAGTTGTTCAACCACGCAGAGGATAATATGGAGAAGGGAATGGATATG TGGGAAAGAATGGAGACATTGCGCTTGAAGGGACTGTCTAAACCAAGTAAAGAGAAGGTT GTACTTGAGAAGATGGTCTTAGAAGGTTTTGTGAAGGATATATCAGCAGATGAAGCATTT GAACAGGCTTCAAGCATACGATCACATATAAATATCTTGTGGGGAACCATCCTCTATGAA CGTTCAGTAGTTGAATTCAATCTGGGACTTCCCAGCTGGGAGGAGTCACTGACTGTTGCC ATGGAAAAATTTAAGATCGGAGGTGCCTCTCAAGCTGACATCAATGTGATTGTAAAGAAC CATTGTGCTAATGAAACCACCCAAGAAGGACTCAGTTTCAAGGTTGAGGAGATAGTTCAG GCATGGAGTGAAATGCATGATGCTAAAAATTGGAGAAGTGGACCCCTGTATTTCCGGCTT CAACCAGTATTCCGACGTAGAGCTCCAAAGTTGCATCATATACTAGAGCATATGCACTAT GCATAA

Peptide Sequence

PEP ID	Zm00001d024424_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:10:70414238:70420011:-1 gene:Zm00001d024424 transcript:Zm00001d024424_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HIP description:Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
Sequence	MGKPPGARNPAEAEADGDDAVFLELSRELKEEGTRLFNRRDFEGAAFKYDKAVQLLPAGR RVEAAHLRASIAHCYMRMSPAEFHHAIHECNLALEAVPRYSRALLRRAACFEALGRPDLA WGDIRTVLRWEPGNRAARQISDRVRTALEDKGISVALDVLPEDENEIASAKGEERKKSRN KRFDSVAGGREGENGIALLESASTEKQAGPRQTNGTGNHQDHTEDSESNGLEKLEQSTET GEKDMGKKRGAHAAGKKPRCGESKQQKHSAVNHCQDNIGAKEEVMKDVKLVFGEDIRCAQ MPANCSLPQLREIVQNKFPSLKAFLIKYKDKEEDLVTITLSEELSWASNLAVSQVPIRFY VVEVNHVQELGVDGVRRRPSFATLERNRDIMLDNGTIGHDVEHKHYADDWMVQFAQIFKN HVGFSSDAYLDLHDLGLRLHYEAMEDTIQREEAQEIFEVAESKFKEMAALALFNCGNVHM SRARRRPCLAEDPLQEFILEKVNVSYDWACTEYAKAGAMFEEAVKTKSDFFEGLIALGQQ KFEQAKLSWYYALACKINMETEVLELFNHAEDNMEKGMDMWERMETLRLKGLSKPSKEKV VLEKMVLEGFVKDISADEAFEQASSIRSHINILWGTILYERSVVEFNLGLPSWEESLTVA MEKFKIGGASQADINVIVKNHCANETTQEGLSFKVEEIVQAWSEMHDAKNWRSGPLYFRL QPVFRRRAPKLHHILEHMHYA

Transcript Sequence

Transcript ID	Zm00001d024424_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:10:70414238:70420011:-1 gene:Zm00001d024424 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:HIP description:Octicosapeptide/Phox/Bem1p (PB1) domain-containing protein / tetratricopeptide repeat (TPR)-containing protein
Sequence	GTTTCCTCTTTGTCCCCAAGAAGCGAGAGGGGAAAGGCGTTTCATTTGGGGGAAGGACGA AGGAGGGCGGCCGCCGGCCAGCGCCAGGCCCCAACCATGGGGAAGCCCCCGGGGGCCAGG AATCCGGCGGAGGCGGAGGCCGATGGCGACGACGCGGTGTTCCTCGAGCTGTCGCGGGAG CTCAAGGAGGAGGGCACGCGGCTGTTCAACAGGCGGGACTTCGAGGGCGCGGCGTTCAAG TACGACAAGGCGGTCCAGCTGCTCCCCGCCGGGCGGCGCGTCGAGGCGGCGCACCTCCGG GCCAGCATCGCGCACTGCTACATGCGCATGAGCCCCGCGGAGTTCCACCACGCCATCCAC GAGTGCAACCTCGCGCTGGAGGCGGTGCCCAGGTACAGCAGGGCGTTGCTCCGCCGGGCC GCCTGCTTCGAGGCGCTGGGCAGGCCCGACCTGGCGTGGGGGGACATCCGGACGGTGCTG CGTTGGGAGCCCGGCAACCGCGCCGCGCGCCAGATCTCGGACAGGGTGCGTACGGCATTG GAGGATAAGGGTATCTCGGTTGCCTTGGATGTGCTGCCAGAGGATGAGAATGAGATTGCT AGCGCCAAAGGAGAGGAGAGGAAGAAATCTCGTAATAAGCGTTTTGATTCGGTTGCGGGG GGGCGGGAGGGTGAAAATGGTATTGCGCTACTAGAATCTGCTTCCACGGAGAAGCAGGCT GGCCCGAGACAAACAAATGGAACAGGGAATCATCAGGATCATACTGAAGATAGTGAATCC AATGGTCTCGAGAAGCTAGAACAAAGTACTGAGACGGGAGAGAAGGACATGGGCAAAAAG CGAGGTGCACACGCTGCTGGAAAGAAACCGAGGTGTGGTGAGAGCAAGCAGCAAAAGCAT TCTGCAGTGAATCATTGTCAGGACAACATTGGTGCCAAGGAGGAAGTCATGAAGGATGTG AAGCTGGTCTTTGGAGAGGACATCAGGTGTGCTCAGATGCCAGCTAACTGCTCTCTGCCA CAATTGAGAGAAATAGTTCAGAACAAATTCCCGTCACTGAAAGCGTTTCTGATCAAGTAT AAAGACAAAGAAGAAGACTTGGTGACGATAACCTTGTCTGAGGAGCTAAGCTGGGCAAGC AATCTGGCAGTTTCGCAAGTGCCAATCCGATTCTATGTTGTAGAGGTTAATCATGTTCAA GAGCTTGGTGTGGATGGGGTCAGGAGACGTCCTTCCTTTGCCACGTTAGAGAGAAATCGT GATATCATGTTGGATAATGGGACCATTGGGCATGATGTTGAGCATAAGCATTACGCTGAT GACTGGATGGTACAGTTTGCACAGATATTTAAGAATCATGTTGGTTTTAGTTCTGATGCA TATCTGGATCTCCATGACCTTGGCCTGAGACTGCACTATGAGGCTATGGAAGACACAATA CAAAGAGAAGAGGCACAGGAAATATTTGAGGTTGCAGAGTCCAAATTTAAGGAGATGGCA GCACTGGCATTGTTTAACTGCGGCAATGTCCACATGTCTCGTGCAAGAAGAAGGCCATGC TTGGCTGAAGATCCTTTACAGGAATTTATACTTGAGAAAGTCAATGTTTCATATGATTGG GCATGCACAGAATATGCCAAAGCTGGTGCAATGTTTGAAGAAGCTGTCAAAACTAAATCT GACTTTTTTGAAGGACTTATTGCTCTTGGCCAACAGAAATTCGAGCAGGCCAAACTCTCT TGGTATTACGCTCTTGCATGCAAGATAAATATGGAAACTGAAGTTTTGGAGTTGTTCAAC CACGCAGAGGATAATATGGAGAAGGGAATGGATATGTGGGAAAGAATGGAGACATTGCGC TTGAAGGGACTGTCTAAACCAAGTAAAGAGAAGGTTGTACTTGAGAAGATGGTCTTAGAA GGTTTTGTGAAGGATATATCAGCAGATGAAGCATTTGAACAGGCTTCAAGCATACGATCA CATATAAATATCTTGTGGGGAACCATCCTCTATGAACGTTCAGTAGTTGAATTCAATCTG GGACTTCCCAGCTGGGAGGAGTCACTGACTGTTGCCATGGAAAAATTTAAGATCGGAGGT GCCTCTCAAGCTGACATCAATGTGATTGTAAAGAACCATTGTGCTAATGAAACCACCCAA GAAGGACTCAGTTTCAAGGTTGAGGAGATAGTTCAGGCATGGAGTGAAATGCATGATGCT AAAAATTGGAGAAGTGGACCCCTGTATTTCCGGCTTCAACCAGTATTCCGACGTAGAGCT CCAAAGTTGCATCATATACTAGAGCATATGCACTATGCATAACTCCTAACTACTATTGTA TCAGGTAATTTTCTACATAGGTATTAGTTTCAAGAATGAATTCCATAGAGAAAATGAGTC ACAAACATATTTTTCAACGAAAGACCTGAGAATTAACTCTGTCAAACATATTAAGAACAT AACTATAAGTTCGGTTTTCAGATCAGAACATAAAAAGTTATGTCCAAATATCCTATAGAA TGGTTCGAACTTGTCTTGGTAATTGTTCCACTTCCATAAAAAATGAAATCCATATATATT TTCTTAGTTTGGTGGAAATTCATGGAACTTCTTGTCATTTGCATAGTACACGATTTTGTG ATATGTAATTTTAATTCATAGTAATAAACATAAATGTTCTTACTAATACAAATCACTTTT ATATCTTAATAAACTTTTGGTGTTTTAGTGTTAGGGCTTTAACACTTTGGCTGTAATCAA GTACTACAAAGATAGGATGTGGGGACTGTAAGGGACAACAAATACACATTTTTCTATAAT TTTGGTTAATGGTGATAAGAAATTCTTATCATACATTAACCTTGTGCTATCTGCTATGGT ACACGGGGACAACTACAAATAGAAATGGAGTGGGAGTTTTGATCGATAAAATTCTCAAGA ATAGGGTGGTGGATATGAGAAGGTGATAAAATTCTCAAGTTTGTCAGGGGTTATTTGGTC TTGAACGTAATTAGCATGTATGTGGTATGCCCCCAAAGCAGGTCACAATGAGAGTGCTAA AAGTCTTTTCTAGGAAGACTTAAATGGCATGGTTAGAGCTATATCTATTAGTGATAAGCT TTTCATAGGAGATCTCAATTTACATGTAGGTACAACAAGTGCAGGTTTAGAGGCGGTTTA TGAAGGTTTTGTGTATGGTAGTAGGAAACATGAGGGAGAGGAAGTCTTGGACTTTGCAAT AGCTTTTGGCATATTGATAGCCAACACTTTCTCTTTAGAAAGAGAATCCCATTTAGTGAC CTATTGTAGTAGCCAACACTCTAGTTAGATTGACTTTGTCCTTACAAGAAGAGAGGATAA ATAAGCATGTTTGGATTGCAAGGTGATACCCGAGGAGTGCGTTGTCTCTCAACATAAGCT TGTGGTGGCGGTCTTTCGTTTCCAGGTGCGTGTCCGTAGGGATAAACTAGCCAACATTGC GAGAACAAAGTGGTGGATACTAAAAGGGGATACTATAGAAGTCTTCAAGAAAAGGACCAT CAAAGATGGCACTTGGAAGGAAGAAGTTGACACAAACAATATGTGGGAGAAGATAGCAAC TTGCATTCGGAAGGTGGTATTAGAGTTAGAGTTGTGTGGAGCAACCAAAGGGAGTGGAGA CCAAGCTAAAGATACTTTGTGGTGGAACGAGAAAGTACAAAGAGCAATTAAGGAGAACAA AGAATGCTACGAACATTTATACCATGACAAGAATGTGGACAACATAGAAAAGTACAAGGT AGCAAAGAAGACAACAAAGTGAGTTGTAATTGTGGCAAAGGGTAGGACATACGAGAATCT CTACCAACGTTTGAGTACGAAGGAATGAGATAAAGACATAAATAGGATGGTTGGTCCGTG GGAGGAAGACAAGAGACTTTAACCAAGTTAAGTGCATTAAGACTGTCTCCGGCAGCTATC GTATCTCATCCCCTATTTCAAATTTCACTATGTAAACAGTGTAATCTACAGTGCAAATTC CCTATTTTACACGACCTGTTGCGGACAGCATAAGGATGAAACATAGCATCTCTTGGTGAA GGAGGATCAGATCAAACATAGATGCAATAATATCTTGACAAATTATTCAATGGGCAGAAC GAGAACACCACCTTTCGGTTAGATGACTGTTTTCATGACACAATAGACACTTTATGTGTA GGATCCAAGAATCTAAAGTTAGAGATGTTAGAGTGGACGCACTGACCAAATCAATCCAAA AGCTTATACACGCTTAACACTAATGACCAGCCACAAAGAACCGGCACTTCTCGGGCACCC AAGTTTTCTAAATTCTCTCCCAAGGGCTGAAGGCAACTGTACCTTGAAGTAAATTCATGT AAGCAGATTTGGGAATCCTCCACATCAGGTTGGAGAACCACTTCTGACAAGATATCCCAC AGATCCAAAAAACCAAAGACTAGTGAGCATAATTACAGTTACCATCAAGCGAAGGGTATT TTAGAACAAGAAAGTCTTCAAAAATAGATTTTGATAATTGAGTTACTTGCATTATATTGT CAGGTGCTGCAAAACTAACAACCATAAAGTATTTTGAATATATAATTAGTTGACACAACT TTTGTACACTGAACATGCATATAACTTGACTAATTACTGACCAACATTCGTAAAGTTTGT CTTAGAACAAAATAATGCCTTTACGTTGATGAGCAAAAGAAGTATTAGGTAAGTGTTTTG AATGAAGATGGATTGAATTTTTTTTCAAAAAAAATCATTACTCCATTTAGAGAAGGTTAC AAATTTTGTATTATAGTTTTACATGTCCCGCATATTATTTATTTTAAATATCTGGATGGT TGTACTTCCACGTACTAAATACAGTACAATTTGTTTCAGTTTCTAAAACTATTCTTGATG ATATTTTTCCTTTTTGCAGATTTGTTCATCTTAGAAGCTTTGTTGCACTTACTC