Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d024318_T010
CDS Infomation

cds chromosome:B73_RefGen_v4:10:64153205:64156243:1 gene:Zm00001d024318 gene_biotype:protein_coding transcript_biotype:protein_coding description:VIN3-like protein 2
Sequence

ATGGATCCAGAAAAACAAAATGAAATGAGCTTGATGGACAAGAGACAACTAGTATACGAA
GTTGCAAGATGGCCGCAAGGTGCCGTGGAGATTCTTAAGTGCTGGACTCGAAGGGAACTT
CTTGAGCTTATCTGTGTTGAGTTGGGCAAAGAGAGGAAGTATACCAATGTCCCAAAAGCT
AAGATGATCGCTTATCTCTTGAAATTAGTTTCACGAAAGAGTGGAAAGAATGGGCAACTC
AAGGATGATAATGCAAATGTTATGTTATTAGAGCAGGATAACAAAGATGAAACACAAATG
AAGGAATCTGAGGAACAAGAACAATCACGACCACTCAAAACTGCAAACTCTGACTCATCA
ATACGTAGAGAGGCTCATGCCTGTTGTTCAGTGGTGTGCAGCAATGTTGCATGCCAAGCC
ACACGGAATGCAGGAGATAATTATTGCAAACGTTGCTCTTGCTGCATTTGCAATAAATAT
GATGATAACAAAGACCCTAGCTTGTGGTTGGTTTGCAGCTCTGATAATCCATACAGTGGT
TGTTCATGTGGTGTCTCTTGTCACCTAAACTGTGCTCTAAAGAATAAAAAGGCTGGCATT
GTCAATAATGGCTGCAACAAGTTAGACTGTAGTTTCTACTGTGTTAGCTGTGGGAAAATC
AACTGGCTAATGAGGAGTTTGCAGAAACAACTTGCAATTGCTAGGGAGGCAAGAAGAGTT
GATGTGCTTTGTGAGAGGCTGTCATTGAGCCATAAAATGGTAAAAGGATCTGAACGTTAT
AAGGAAATAACGAGCATAATCAGCTCAGCTGCGAAAACACTTGAAAAAGAAGTTGGTGGT
GCATTAGATCAGGTTTCTGCGATCACGGGGCGTGGCATTGTTAACCGGCTTACTTGTGGT
GCTGAAGTTCAGAAGCTTTGTTCAAGTGCATTAGAAATTGTAGACTCTACAGTGGATAGC
ATCTTGGAGTTCGAGTCAAATAATAGTCCAAAACTCTTAGGTCCCCAGCCCCAAATCCTT
TTTGATGAAATCACTCCATTTTCTGTGGTAATTGTGTTGAACTATCAGGATAGCATCGGT
AAGGAGCAGGTTGATGGTTCCAAAGTTTGGCACCGAAGTGCCAAGGTTTGCAACTATTCA
TCGGAGCCCACATGCCACATATTGAGGCCAAATACTAGGAGCCTGGTTTCTGGTCTGAGC
CCTTCAACTGAATACTTCTTCAAGGTTTTGCCTTTTAGCAGCGTACAGGGGTTTACTGAG
TGGGAGGCAAAATGCAGTACACGCAGCCTGGACCATGGCAGCAGCCAGTGCTCAACTCAG
AACTCTGAGAGCATGTGCCTCAAAGTGGATCCAATGCAGCATCAGAAAAAGGATTTGAAT
GTGCAGAATCATCAGAGAACTATTCAATATGATTCACCTAAGGGGTCTACAAATTCAAGT
GAGAACAATTTATTGTGTGACCGGTATTCCAAGCGGGCTAAGGTTGCAAGGCTAGATGGT
GCAAGTGACAATGATGAAAGCCAGTTGCCGCCAACTTCTGAAGTTTTACCGTTTGCAAGC
TCCAACTACTCTCCTTCCGAAGCTCCAAGTAAACCTGACTTGCTTATTGGCACCCCAGAT
TCGGCATCCAAGAACTATGTGGAGCAGCAGTACGAGTACTGTGTGAAGGTGGTCAGATGG
TTGGAGCATGAAGGGCACATGGACAATGACTTCCGTGTGAAGTTCCTCACTTGGTTCAGT
CTGAAGGCAACAGCGCAGGACAGGCGAATCGTTGGCGCCTTAGTAGATGTTCTTATCGGT
GATCCTGCAAGCTTGGTTGCCCAACTGGTTGATGCATTCAAGGATATCATCTACACCAAG
GAGAAGCCCTTTCAAACACAACAGAAGGATGCACGCTGCAAGATTTGGCACTAG

Peptide Sequence

PEP ID

Zm00001d024318_P010
PEP Infomation

pep chromosome:B73_RefGen_v4:10:64153205:64156243:1 gene:Zm00001d024318 transcript:Zm00001d024318_T010 gene_biotype:protein_coding transcript_biotype:protein_coding description:VIN3-like protein 2
Sequence

MDPEKQNEMSLMDKRQLVYEVARWPQGAVEILKCWTRRELLELICVELGKERKYTNVPKA
KMIAYLLKLVSRKSGKNGQLKDDNANVMLLEQDNKDETQMKESEEQEQSRPLKTANSDSS
IRREAHACCSVVCSNVACQATRNAGDNYCKRCSCCICNKYDDNKDPSLWLVCSSDNPYSG
CSCGVSCHLNCALKNKKAGIVNNGCNKLDCSFYCVSCGKINWLMRSLQKQLAIAREARRV
DVLCERLSLSHKMVKGSERYKEITSIISSAAKTLEKEVGGALDQVSAITGRGIVNRLTCG
AEVQKLCSSALEIVDSTVDSILEFESNNSPKLLGPQPQILFDEITPFSVVIVLNYQDSIG
KEQVDGSKVWHRSAKVCNYSSEPTCHILRPNTRSLVSGLSPSTEYFFKVLPFSSVQGFTE
WEAKCSTRSLDHGSSQCSTQNSESMCLKVDPMQHQKKDLNVQNHQRTIQYDSPKGSTNSS
ENNLLCDRYSKRAKVARLDGASDNDESQLPPTSEVLPFASSNYSPSEAPSKPDLLIGTPD
SASKNYVEQQYEYCVKVVRWLEHEGHMDNDFRVKFLTWFSLKATAQDRRIVGALVDVLIG
DPASLVAQLVDAFKDIIYTKEKPFQTQQKDARCKIWH

Transcript Sequence

Transcript ID

Zm00001d024318_T010
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:64153205:64156243:1 gene:Zm00001d024318 gene_biotype:protein_coding transcript_biotype:protein_coding description:VIN3-like protein 2
Sequence

TCTGATATTTCTTTCATCCAGGAATTGTGATGGATCCAGAAAAACAAAATGAAATGAGCT
TGATGGACAAGAGACAACTAGTATACGAAGTTGCAAGATGGCCGCAAGGTGCCGTGGAGA
TTCTTAAGTGCTGGACTCGAAGGGAACTTCTTGAGCTTATCTGTGTTGAGTTGGGCAAAG
AGAGGAAGTATACCAATGTCCCAAAAGCTAAGATGATCGCTTATCTCTTGAAATTAGTTT
CACGAAAGAGTGGAAAGAATGGGCAACTCAAGGATGATAATGCAAATGTTATGTTATTAG
AGCAGGATAACAAAGATGAAACACAAATGAAGGAATCTGAGGAACAAGAACAATCACGAC
CACTCAAAACTGCAAACTCTGACTCATCAATACGTAGAGAGGCTCATGCCTGTTGTTCAG
TGGTGTGCAGCAATGTTGCATGCCAAGCCACACGGAATGCAGGAGATAATTATTGCAAAC
GTTGCTCTTGCTGCATTTGCAATAAATATGATGATAACAAAGACCCTAGCTTGTGGTTGG
TTTGCAGCTCTGATAATCCATACAGTGGTTGTTCATGTGGTGTCTCTTGTCACCTAAACT
GTGCTCTAAAGAATAAAAAGGCTGGCATTGTCAATAATGGCTGCAACAAGTTAGACTGTA
GTTTCTACTGTGTTAGCTGTGGGAAAATCAACTGGCTAATGAGGAGTTTGCAGAAACAAC
TTGCAATTGCTAGGGAGGCAAGAAGAGTTGATGTGCTTTGTGAGAGGCTGTCATTGAGCC
ATAAAATGGTAAAAGGATCTGAACGTTATAAGGAAATAACGAGCATAATCAGCTCAGCTG
CGAAAACACTTGAAAAAGAAGTTGGTGGTGCATTAGATCAGGTTTCTGCGATCACGGGGC
GTGGCATTGTTAACCGGCTTACTTGTGGTGCTGAAGTTCAGAAGCTTTGTTCAAGTGCAT
TAGAAATTGTAGACTCTACAGTGGATAGCATCTTGGAGTTCGAGTCAAATAATAGTCCAA
AACTCTTAGGTCCCCAGCCCCAAATCCTTTTTGATGAAATCACTCCATTTTCTGTGGTAA
TTGTGTTGAACTATCAGGATAGCATCGGTAAGGAGCAGGTTGATGGTTCCAAAGTTTGGC
ACCGAAGTGCCAAGGTTTGCAACTATTCATCGGAGCCCACATGCCACATATTGAGGCCAA
ATACTAGGAGCCTGGTTTCTGGTCTGAGCCCTTCAACTGAATACTTCTTCAAGGTTTTGC
CTTTTAGCAGCGTACAGGGGTTTACTGAGTGGGAGGCAAAATGCAGTACACGCAGCCTGG
ACCATGGCAGCAGCCAGTGCTCAACTCAGAACTCTGAGAGCATGTGCCTCAAAGTGGATC
CAATGCAGCATCAGAAAAAGGATTTGAATGTGCAGAATCATCAGAGAACTATTCAATATG
ATTCACCTAAGGGGTCTACAAATTCAAGTGAGAACAATTTATTGTGTGACCGGTATTCCA
AGCGGGCTAAGGTTGCAAGGCTAGATGGTGCAAGTGACAATGATGAAAGCCAGTTGCCGC
CAACTTCTGAAGTTTTACCGTTTGCAAGCTCCAACTACTCTCCTTCCGAAGCTCCAAGTA
AACCTGACTTGCTTATTGGCACCCCAGATTCGGCATCCAAGAACTATGTGGAGCAGCAGT
ACGAGTACTGTGTGAAGGTGGTCAGATGGTTGGAGCATGAAGGGCACATGGACAATGACT
TCCGTGTGAAGTTCCTCACTTGGTTCAGTCTGAAGGCAACAGCGCAGGACAGGCGAATCG
TTGGCGCCTTAGTAGATGTTCTTATCGGTGATCCTGCAAGCTTGGTTGCCCAACTGGTTG
ATGCATTCAAGGATATCATCTACACCAAGGAGAAGCCCTTTCAAACACAACAGAAGGATG
CACGCTGCAAGATTTGGCACTAGAAACCTTCATAACTGCTCTGTGTCGCTGTGTGACATC
ATTTTTCTGGTAATTTTCTGGCGACTGAATGATGAACTACTGAAGTTATATCACCTAGCA
GATTGCGTGCGGATTCTGTTGAGATGGATATTGTGCACTCTCTTAAAGGTTATAAGATGC
TGTAGATGCTTCATTTGGCATTCAGGTCCATCAGATCTCTCATTTGTTCATTCAAATTCA
GTCGGTAGGCAGACTATTAATCCATGAAGACAATCATGGTGGAACCATGTGCTGGTAATC
ATGAATCGGTTCTGAGTTTAGGTTTCGACTAGTAAGTAGTTGAAGCTTGTTAGCAGACAA
GCAACTGTATTCATATGTGGAATGCTATGGTGGATCTGCAAGCTAACTATTGTGAATTCA
TATCATGACTTAAGAGATGTTTATTATTATTAGTTGACTTATTTTT