Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d024211_T003
CDS Infomation

cds chromosome:B73_RefGen_v4:10:56725558:56728538:1 gene:Zm00001d024211 gene_biotype:protein_coding transcript_biotype:protein_coding description:Alpha-humulene/(-)-(E)-beta-caryophyllene synthase
Sequence

ATGGCTGCCCTAACACAAACTACAGATGGTCCTCGCCTCGGCGAGCAGGAGATGAAGAAG
ATGTCTCCGGCCTCCTTCCATCCAACTCTGTGGGGAGATTTCTTTCTTTCTTACGAGGCT
CCGACCGAGACACAGGAAGCTCAAATGAGAGAAAAGGCTGGAGTGCTAAAGGAAGAAGTG
AGAAACATGATTAAAGGTTCACATGATATGCCAGAAATAGTGGACCTTATTATCACCCTG
CAGCGACTAAATCTGGACTACCACTACGAGGATGAGATAACCGAAAAGTTGACTGTTGTT
TACAACTCCAATTATGATGGTGGTAATTTGGACTTAGTTTCACGCCAATTCTATCTTCTG
CGTAAATGTGGCTATCATGTTTCATCCGATGTATTCCTAAATTTCAAAGACCAATATGGA
AATTTTATTGGGGCAGATACCAGGAGCTTGTTAAGCTTATACAATGCAGCATACCTGAGG
ATTCATGGAGAGACAGTGCTTGATGAGGCAATTTCTTTTACTACGAGATGCCTTCAAGAT
AGATTAGAACATTTGGAATCACCAATAGCAGAGGAAGTGTCGTCTGCCCTTGATACCCCA
CTTTTTAGAAGGGTTGGAACTTTGGAAATAAAGGATTACATTCCTATCTACGAAAAGGAC
GCTAAACAAAACAAATCAATATTAGAGTTTGCGAAACTGAACTTCAACCTTCTACAGCTT
CTTTATTCATCAGAGCTCAAAGAGTGCACATCCTGGTGGAAAGAACTCCGCGTCGAATCA
AACTTGAGTTTTGTGAGGGATAGAATAGTAGAAGTGTACTTTTGGATGAGTGGAGGATGT
TATGATCCTCAATATTCTCATTCTCGGATTATACTTACAAAGATTGTTGCTTTCATCACG
ATTCTAGATGATACCCTTGACTCACATGCTAATTCTTATGAGAGTATGCAACTTGCAAAA
GCAGTCGAAAGGTGGGATGAAACTGCAGTCTCTCTACTCCCAGAATACATGAAGGATTTC
TACATGTATTTGTTGAAGACATTTTCATCGTTTGAAAATGAGTTAGGACCAGACAAGAGC
TACCGAGTGTTCTACTTAAAAGAAGCGGTGAAGGAATTAGTTCGGGAATATACCAAGGAA
ATAAAATGGCGTGATGAGGATTATGTCCCCAAAACATTGAAAGAACACCTTAAAGTTTCA
CTCATAAGCATTGGAGGCACCCTGGTGCTATGTTCCGCGTTTGTTGGAATGGGTGATGTA
GTAACAAAGAAGATCATGGAATGGGTTATGAGTGATGCTGAACTTGTTAAGTCTTTTGGT
ATATTTGTACAGCTCTCCAATGATATTGTATCAACCAAGCGTGAACAAAGAGAGAAGCAT
TGTGTCTCCACTGTTCAGTGTTACATGAAGCAGCATGAACTAACAATGGATGAAGCATGT
GAGCAGATAAAAGAACTTATAGAAGATTCATGGAAGTTCATGATTGAACAAGGCCTTGCA
CTAAAAGAATACCCGATAATTGTGCCACGAACGGTACTAGAGTTTGCACGAACTGTAGAC
TACATGTACAAGGAAGCTGATAAGTACACTGTCTCCCATACAATCAAAGACATGTTAACG
TCGCTTTATGTGAAGCCGGTACTCATGTGA

Peptide Sequence

PEP ID

Zm00001d024211_P003
PEP Infomation

pep chromosome:B73_RefGen_v4:10:56725558:56728538:1 gene:Zm00001d024211 transcript:Zm00001d024211_T003 gene_biotype:protein_coding transcript_biotype:protein_coding description:Alpha-humulene/(-)-(E)-beta-caryophyllene synthase
Sequence

MAALTQTTDGPRLGEQEMKKMSPASFHPTLWGDFFLSYEAPTETQEAQMREKAGVLKEEV
RNMIKGSHDMPEIVDLIITLQRLNLDYHYEDEITEKLTVVYNSNYDGGNLDLVSRQFYLL
RKCGYHVSSDVFLNFKDQYGNFIGADTRSLLSLYNAAYLRIHGETVLDEAISFTTRCLQD
RLEHLESPIAEEVSSALDTPLFRRVGTLEIKDYIPIYEKDAKQNKSILEFAKLNFNLLQL
LYSSELKECTSWWKELRVESNLSFVRDRIVEVYFWMSGGCYDPQYSHSRIILTKIVAFIT
ILDDTLDSHANSYESMQLAKAVERWDETAVSLLPEYMKDFYMYLLKTFSSFENELGPDKS
YRVFYLKEAVKELVREYTKEIKWRDEDYVPKTLKEHLKVSLISIGGTLVLCSAFVGMGDV
VTKKIMEWVMSDAELVKSFGIFVQLSNDIVSTKREQREKHCVSTVQCYMKQHELTMDEAC
EQIKELIEDSWKFMIEQGLALKEYPIIVPRTVLEFARTVDYMYKEADKYTVSHTIKDMLT
SLYVKPVLM

Transcript Sequence

Transcript ID

Zm00001d024211_T003
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:56725558:56728538:1 gene:Zm00001d024211 gene_biotype:protein_coding transcript_biotype:protein_coding description:Alpha-humulene/(-)-(E)-beta-caryophyllene synthase
Sequence

ATCCCATGTCTCACTACATACCAAAAGCATCCCACACATCTGCTAATAAGGATGGCTGCC
CTAACACAAACTACAGATGGTCCTCGCCTCGGCGAGCAGGAGATGAAGAAGATGTCTCCG
GCCTCCTTCCATCCAACTCTGTGGGGAGATTTCTTTCTTTCTTACGAGGCTCCGACCGAG
ACACAGGAAGCTCAAATGAGAGAAAAGGCTGGAGTGCTAAAGGAAGAAGTGAGAAACATG
ATTAAAGGTTCACATGATATGCCAGAAATAGTGGACCTTATTATCACCCTGCAGCGACTA
AATCTGGACTACCACTACGAGGATGAGATAACCGAAAAGTTGACTGTTGTTTACAACTCC
AATTATGATGGTGGTAATTTGGACTTAGTTTCACGCCAATTCTATCTTCTGCGTAAATGT
GGCTATCATGTTTCATCCGATGTATTCCTAAATTTCAAAGACCAATATGGAAATTTTATT
GGGGCAGATACCAGGAGCTTGTTAAGCTTATACAATGCAGCATACCTGAGGATTCATGGA
GAGACAGTGCTTGATGAGGCAATTTCTTTTACTACGAGATGCCTTCAAGATAGATTAGAA
CATTTGGAATCACCAATAGCAGAGGAAGTGTCGTCTGCCCTTGATACCCCACTTTTTAGA
AGGGTTGGAACTTTGGAAATAAAGGATTACATTCCTATCTACGAAAAGGACGCTAAACAA
AACAAATCAATATTAGAGTTTGCGAAACTGAACTTCAACCTTCTACAGCTTCTTTATTCA
TCAGAGCTCAAAGAGTGCACATCCTGGTGGAAAGAACTCCGCGTCGAATCAAACTTGAGT
TTTGTGAGGGATAGAATAGTAGAAGTGTACTTTTGGATGAGTGGAGGATGTTATGATCCT
CAATATTCTCATTCTCGGATTATACTTACAAAGATTGTTGCTTTCATCACGATTCTAGAT
GATACCCTTGACTCACATGCTAATTCTTATGAGAGTATGCAACTTGCAAAAGCAGTCGAA
AGGTGGGATGAAACTGCAGTCTCTCTACTCCCAGAATACATGAAGGATTTCTACATGTAT
TTGTTGAAGACATTTTCATCGTTTGAAAATGAGTTAGGACCAGACAAGAGCTACCGAGTG
TTCTACTTAAAAGAAGCGGTGAAGGAATTAGTTCGGGAATATACCAAGGAAATAAAATGG
CGTGATGAGGATTATGTCCCCAAAACATTGAAAGAACACCTTAAAGTTTCACTCATAAGC
ATTGGAGGCACCCTGGTGCTATGTTCCGCGTTTGTTGGAATGGGTGATGTAGTAACAAAG
AAGATCATGGAATGGGTTATGAGTGATGCTGAACTTGTTAAGTCTTTTGGTATATTTGTA
CAGCTCTCCAATGATATTGTATCAACCAAGCGTGAACAAAGAGAGAAGCATTGTGTCTCC
ACTGTTCAGTGTTACATGAAGCAGCATGAACTAACAATGGATGAAGCATGTGAGCAGATA
AAAGAACTTATAGAAGATTCATGGAAGTTCATGATTGAACAAGGCCTTGCACTAAAAGAA
TACCCGATAATTGTGCCACGAACGGTACTAGAGTTTGCACGAACTGTAGACTACATGTAC
AAGGAAGCTGATAAGTACACTGTCTCCCATACAATCAAAGACATGTTAACGTCGCTTTAT
GTGAAGCCGGTACTCATGTGAAGGTTCTTTATTGTTATCTTGGATCAAGAGAATATCAAC
ATGAAGCACTACTCCAAGCAGGCCAAAATAACTACAGGAGCTATATATATTGTACACCTT
AAGTAATATCAAGGGATATGGCAGTATATATGTATTACTCAAAGAAAAACGACAACAACC
ATCCTATAGTTGTTGTTCTCGGGCATCTGTTGTATTGTGCTATTTTTCCTTC