Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d024207_T005
CDS Infomation

cds chromosome:B73_RefGen_v4:10:56446227:56449468:-1 gene:Zm00001d024207 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TPS6 description:Alpha-humulene/(-)-(E)-beta-caryophyllene synthase
Sequence

ATGGCTGCCCCAACACTAACTGCAGATGGTCCTCGCCTCGGCCAGCAGGAGATGAAGAAG
ATGTCTCCCTCCTTCCATCCAACTCTGTGGGGAGATTTCTTTCTTTCTTACGAGGCTCCG
ACCGAGGCACAGGAAGCTCAAATGAGAGAAAAGGCTGCAGTGCTAAAGGAAGAAGTGAGA
AACATGATTAAAGGTTCACATGATGTGCCAGAAATAGTGGACCTTATTATCACCCTGCAG
CGACTAAATCTGGACTACCACTACGAGGATGAGATAAATGAAAAGTTGACTGTTGTTTAC
AAATCCAATTATGATGGTGGTAATTTGGACTTAGTTTCACGTCGATTCTATCTTCTGCGT
AAATGTGGCTACGATGTTTCATCTGATGTATTCCTAAAATTCAAAGACCAACTTGGGAAT
TTTGTTGAGGCTGATACCAGGAGCTTGTTAAGCTTATACAATGCAGCATTCCTGAGGATT
CATGGAGAGACAGTGCTTGACGAGGCAATTTCTTTTACTATGAGAGTTCTTCAAGATAGA
TTAGAACATTTGGAATCGCCATTAGCAGAGGAAGTGTCTTCTGCTCTTGACACACCACTT
TTTCGAAGGGTTGGAACTTTGGAAATGAAGGATTACATTCCTATCTACGAAAAGGACGCT
AAACAAAATAAATCAATATTAGAGTTTGCGAAACTAAACTTCAACCTTTTACAACTTCGT
TATTCATCAGAGCTAAAAGAGTGCACAACCTGGTGGAAAGAACTTCGCGTCGAATCAAAC
TTGAGTTTCGTCAGGGATAGGATAGTAGAGGTGTACTTTTGGATGAGTGGGGGATGCTAT
GATCCTCAATATTCTCATTCTCGAATTATACTTACAAAGATAGTTGCTTTCATCACGATT
CTAGATGATACCCTTGACTCACATGCTACTTCTTGTGAGAGTATGCAACTTGCAGAAGCA
ATCGAAAGGTGGGATGAAAGTGCAGTCTCTCTACTCCCAGAATACATGAAGGATTTCTAC
ATGTATTTGTTGAAGACATTTTCATCGTTTGAGAATGAGTTAGGACCAGACAAGAGCTAC
CGAGTGTTCTACTTAAAAGAAGCGGTGAAGGAATTAGTTCGGGAATATACCAAGGAAATA
AAATGGCGTGATGAGGATTATGTGCCCAAAACATTGAAAGAGCACCTTAAAGTTTCACTC
ATAAGCATTGGAGGCACTCTGGTGCTATGTTCTGCGTTTGTTGGAATGGGTGATGTAGTA
ACAAAGAAGATCATGAAATGGGTTATGAGTGATGCTGAACTTGTTAAGTCTTTTGGTATA
TTTGTACGGCTCTCCAATGATATTGTATCAACCAAGCGTGAACAAAGAGAGAAGCATTGT
GTCTCCACTGTTCAGTGTTACATGAAGCAGCATGAAATAACAATGGATGAAGCATGTGAG
CAGATAAAAGAACTTACAGAAGATTCATGGAAGTTCATGATTGAACAAGGCCTTGCACTA
AAAGAATACCCGATAATTGTGCCACGAACGGTACTAGAGTTTGCACGAACTGTAGACTAC
ATGTACAAGGAAGCTGATAAGTACACTGTCTCACATACAATCAAAGACATGTTAACGTCG
CTTTATGTGAAGCCAGTACTCATGTGA

Peptide Sequence

PEP ID

Zm00001d024207_P005
PEP Infomation

pep chromosome:B73_RefGen_v4:10:56446227:56449468:-1 gene:Zm00001d024207 transcript:Zm00001d024207_T005 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TPS6 description:Alpha-humulene/(-)-(E)-beta-caryophyllene synthase
Sequence

MAAPTLTADGPRLGQQEMKKMSPSFHPTLWGDFFLSYEAPTEAQEAQMREKAAVLKEEVR
NMIKGSHDVPEIVDLIITLQRLNLDYHYEDEINEKLTVVYKSNYDGGNLDLVSRRFYLLR
KCGYDVSSDVFLKFKDQLGNFVEADTRSLLSLYNAAFLRIHGETVLDEAISFTMRVLQDR
LEHLESPLAEEVSSALDTPLFRRVGTLEMKDYIPIYEKDAKQNKSILEFAKLNFNLLQLR
YSSELKECTTWWKELRVESNLSFVRDRIVEVYFWMSGGCYDPQYSHSRIILTKIVAFITI
LDDTLDSHATSCESMQLAEAIERWDESAVSLLPEYMKDFYMYLLKTFSSFENELGPDKSY
RVFYLKEAVKELVREYTKEIKWRDEDYVPKTLKEHLKVSLISIGGTLVLCSAFVGMGDVV
TKKIMKWVMSDAELVKSFGIFVRLSNDIVSTKREQREKHCVSTVQCYMKQHEITMDEACE
QIKELTEDSWKFMIEQGLALKEYPIIVPRTVLEFARTVDYMYKEADKYTVSHTIKDMLTS
LYVKPVLM

Transcript Sequence

Transcript ID

Zm00001d024207_T005
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:56446227:56449468:-1 gene:Zm00001d024207 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:TPS6 description:Alpha-humulene/(-)-(E)-beta-caryophyllene synthase
Sequence

ATCCCATATCTCACTACCAAAAGCATCCGATCCCACACATCTGCTAAAAGGATGGCTGCC
CCAACACTAACTGCAGATGGTCCTCGCCTCGGCCAGCAGGAGATGAAGAAGATGTCTCCC
TCCTTCCATCCAACTCTGTGGGGAGATTTCTTTCTTTCTTACGAGGCTCCGACCGAGGCA
CAGGAAGCTCAAATGAGAGAAAAGGCTGCAGTGCTAAAGGAAGAAGTGAGAAACATGATT
AAAGGTTCACATGATGTGCCAGAAATAGTGGACCTTATTATCACCCTGCAGCGACTAAAT
CTGGACTACCACTACGAGGATGAGATAAATGAAAAGTTGACTGTTGTTTACAAATCCAAT
TATGATGGTGGTAATTTGGACTTAGTTTCACGTCGATTCTATCTTCTGCGTAAATGTGGC
TACGATGTTTCATCTGATGTATTCCTAAAATTCAAAGACCAACTTGGGAATTTTGTTGAG
GCTGATACCAGGAGCTTGTTAAGCTTATACAATGCAGCATTCCTGAGGATTCATGGAGAG
ACAGTGCTTGACGAGGCAATTTCTTTTACTATGAGAGTTCTTCAAGATAGATTAGAACAT
TTGGAATCGCCATTAGCAGAGGAAGTGTCTTCTGCTCTTGACACACCACTTTTTCGAAGG
GTTGGAACTTTGGAAATGAAGGATTACATTCCTATCTACGAAAAGGACGCTAAACAAAAT
AAATCAATATTAGAGTTTGCGAAACTAAACTTCAACCTTTTACAACTTCGTTATTCATCA
GAGCTAAAAGAGTGCACAACCTGGTGGAAAGAACTTCGCGTCGAATCAAACTTGAGTTTC
GTCAGGGATAGGATAGTAGAGGTGTACTTTTGGATGAGTGGGGGATGCTATGATCCTCAA
TATTCTCATTCTCGAATTATACTTACAAAGATAGTTGCTTTCATCACGATTCTAGATGAT
ACCCTTGACTCACATGCTACTTCTTGTGAGAGTATGCAACTTGCAGAAGCAATCGAAAGG
TGGGATGAAAGTGCAGTCTCTCTACTCCCAGAATACATGAAGGATTTCTACATGTATTTG
TTGAAGACATTTTCATCGTTTGAGAATGAGTTAGGACCAGACAAGAGCTACCGAGTGTTC
TACTTAAAAGAAGCGGTGAAGGAATTAGTTCGGGAATATACCAAGGAAATAAAATGGCGT
GATGAGGATTATGTGCCCAAAACATTGAAAGAGCACCTTAAAGTTTCACTCATAAGCATT
GGAGGCACTCTGGTGCTATGTTCTGCGTTTGTTGGAATGGGTGATGTAGTAACAAAGAAG
ATCATGAAATGGGTTATGAGTGATGCTGAACTTGTTAAGTCTTTTGGTATATTTGTACGG
CTCTCCAATGATATTGTATCAACCAAGCGTGAACAAAGAGAGAAGCATTGTGTCTCCACT
GTTCAGTGTTACATGAAGCAGCATGAAATAACAATGGATGAAGCATGTGAGCAGATAAAA
GAACTTACAGAAGATTCATGGAAGTTCATGATTGAACAAGGCCTTGCACTAAAAGAATAC
CCGATAATTGTGCCACGAACGGTACTAGAGTTTGCACGAACTGTAGACTACATGTACAAG
GAAGCTGATAAGTACACTGTCTCACATACAATCAAAGACATGTTAACGTCGCTTTATGTG
AAGCCAGTACTCATGTGAAGGTTCTTTATTGTTATCTTGGATCAAGAGAATATATTAGCA
TGAAGCACTACTCCAAGGAGGCAAAAATAACTACATGAGCTATATATATTAATTGTATAG
CTTAAGTAATATCAAGGGGTATGGTGGTATATATGTATTACTCAAATAAAAACGACAACA
ACCATCCTATAGTTGTTGTTCTCAGGCATTGTAGGAAAATACATATGTTGCCATCTATTG
TATTGTGCTATGTTTCCTTCAGCTAAAATAAGAATTTTTT