Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d024088_T001
CDS Infomation

cds chromosome:B73_RefGen_v4:10:43222466:43225929:1 gene:Zm00001d024088 gene_biotype:protein_coding transcript_biotype:protein_coding description:Enhancer of polycomb-like transcription factor protein
Sequence

ATGCCGGCCGCCGGGGCCCGCCGCTCCACTCGCGTCTTCATGCCCAAGGCGGCTAAGCCG
CCGCAATCCCAGGAGCACGTCGATCCCGCCACCCGGGTCCTCCGCTCCGGCAAGCGCCTC
GCCGCCGACCGGATCCGCTGGGACGCCAAGGAGGCGGCAGCCTTCCACGTCGACATCAAT
CACGGCCACGACCAGCAGCACCAAAAGGAAGATTACCCCAAACCGGGATTGCCAGCTCTG
ACAAAGTCCTTCGGGCTCGTGTACAGAAGGAAACGCCGTCGCCGCCGGAGGCACCCCGCC
GATGAGGTCGTCGCCGAGGACGAGGACGGCAGCAGGAGGTTTGGGATAGTATACACCAGG
AGGAAGGGCAAGCGATCGAAGGTCAGCCCTCTCCTGGTCCCGCAAGAGCCAGAGGTCCCC
TGTGACATCGCCGCCGCCATACCATGCTCCTCCTCCCGGGAGTTTGCGTCAAGAACTGGT
TTCTTGGATGCCCATTTCTCGGCCCTGGTAGATGATGCCGTCACTTACTCTGGGGCTCAG
ATGCTCGTCATCCTTGTCGATACGTCTTGTTCTGGGAGCTCTCACCGGCTCACTGGCCTT
CTTGTACCCATGCTGCGGTGGATGCGCCGCAGTTGGCAGCGGGGGAAGTTCCGGAACCTT
GCGACATTCATCTTCTCTTCGGGTATAGCTGCTGCGTTTGCATCCCACGGGGTGCACTTT
GTCAAGCTCCAGTGCCAGAGCGCTTCTGCATTGTTACACAGGCCTCTTGCGCATTGTGGG
TGGTGTGTGCTTCATGGTTCCAAGAAATCTGAACCGCTGCTCTCAGTCGATTTCTCAGCA
CTTCCTTCATACTTTTCGAGCTTGCATTATGCTGTAGCTCTTGATTCGATGTATCTGTCA
GCTATGATTCAGCACAGCAGGCTGCTGGTTGAGGGATCTGAAGAAATCTATCCTCGCTCT
CCTTTATATTTGGAATCTGGGGCTCAGAGCAGTGGTTTTGCCGCTACGGCCGCGGGTAAC
AATGAACCTTGCAGAGTTGTTCCGAACTACATGCCCCTCGAACAAGTTGCTGGACTAGTG
GCACATGGTCTGAGGTTGAAGAAGCATCAAAGGCGGAGAACTATGAGACATCCCCGAAAT
CGGCGGCGACTTATTATAGCTAGATTACCTGACAATGGAATTGGGATGAAGCACAGTACA
ACTTCCATGCAAACAGAAGAAAATGTGCGATCAAGTAGGCAAGGACCTCCTGTGGAGCCT
GTCTATCCTAAAGCAGCATTAGAAATTTCTCTTGATTTGCTTGAAAACATGGATGAAAGT
GATGTTTCGACTCCCATCGGATCAGCTAGGAGAAAGAGATCTTCTTTGAAGAGCCCTGTT
GAGAGAATGAATGAAAAGGTGGCCTTGGCTGAGGTGAGACAGAACATAGATTCTGTTCAA
AGCAAAGCGAATCTTCTAAATCTTCAAGCTGATAGGTGCTGGAGGGAAGAAGGTGCTGAA
GTTATGCTAGAACTATCAGATACCAATAAGTGGTGTATAGTTGTGAAGATACAAGGTATT
ACTAGGTATTCACTTAAACCTTCAGATGTTAGGTCATATGTCATTAATCGTCATTCTCAA
GCCTACATGTGGGCAGTTGATGATGCATGGAAACTTGAGTTCACTGATAAGTGGGACTGG
CTGTTATTCAAAGAGCTGCATGTTGTGGGCCGTGAGCGTAATTCCCAGGGGAAGACAATC
CCAATTCCTGGGGTACATGAAGTTTCTGATGGCATGGAAGGGATTGTTACAGATCCTTTC
TCACGCCCTGTGCCAGACTATATTAGGATGGTGGATGATGAAGTTGGACGAGCTATCTCA
AGAGATTCTATTTATGACATGGACTCAGAGGATGAACAATGGCTCATTCAGTTGAATCCT
GCAGATTCAGATTCAAACAGCTCTCAAAGGAATCATCTCTCTTACGAAGACTTTGAGAGG
ATAATAAGCATATTTGAAAAGGATGCCTACAACAATGCCCAAGGAAAAAATGATTTGAGT
GAGTTTTTTTATAGATATCCTGCTTTAGGAAAGGATGATAACGTGCATGCTGTGTATAAA
TATTGGACAAGTAAGAGGTCCAAGAGAGCTGCACCATTGCTTAGGGTATTTCAGGGTGCA
CCCATAAGGCGAGGGCATTTATCACAAAAGTCTGCCATGAAGCGAAAGAGATCTTTCAAG
AGACAAAAAAGCCAAGCTGGTCGTGGAAAGCCTGAAGCTTTATTGCAATACAATGCTGAA
GAGGACGCAGCTTTGCACAGAGTTGCCCAAGCTGAACGTGCGGCAAAACAGGCTGTAGAA
AGAGCTATTCGACTGCGCAACAGAGCCCAGTCTCTCATGACAAACGCAGAGCTCGCAGCA
TACAAATCCGTCATGGCTCTCAGGATTGCCGAGGCTGCTAGGATATCTGACTCGTCCCGA
GATATTGTTTGTACTATCCTCGACTAA

Peptide Sequence

PEP ID

Zm00001d024088_P001
PEP Infomation

pep chromosome:B73_RefGen_v4:10:43222466:43225929:1 gene:Zm00001d024088 transcript:Zm00001d024088_T001 gene_biotype:protein_coding transcript_biotype:protein_coding description:Enhancer of polycomb-like transcription factor protein
Sequence

MPAAGARRSTRVFMPKAAKPPQSQEHVDPATRVLRSGKRLAADRIRWDAKEAAAFHVDIN
HGHDQQHQKEDYPKPGLPALTKSFGLVYRRKRRRRRRHPADEVVAEDEDGSRRFGIVYTR
RKGKRSKVSPLLVPQEPEVPCDIAAAIPCSSSREFASRTGFLDAHFSALVDDAVTYSGAQ
MLVILVDTSCSGSSHRLTGLLVPMLRWMRRSWQRGKFRNLATFIFSSGIAAAFASHGVHF
VKLQCQSASALLHRPLAHCGWCVLHGSKKSEPLLSVDFSALPSYFSSLHYAVALDSMYLS
AMIQHSRLLVEGSEEIYPRSPLYLESGAQSSGFAATAAGNNEPCRVVPNYMPLEQVAGLV
AHGLRLKKHQRRRTMRHPRNRRRLIIARLPDNGIGMKHSTTSMQTEENVRSSRQGPPVEP
VYPKAALEISLDLLENMDESDVSTPIGSARRKRSSLKSPVERMNEKVALAEVRQNIDSVQ
SKANLLNLQADRCWREEGAEVMLELSDTNKWCIVVKIQGITRYSLKPSDVRSYVINRHSQ
AYMWAVDDAWKLEFTDKWDWLLFKELHVVGRERNSQGKTIPIPGVHEVSDGMEGIVTDPF
SRPVPDYIRMVDDEVGRAISRDSIYDMDSEDEQWLIQLNPADSDSNSSQRNHLSYEDFER
IISIFEKDAYNNAQGKNDLSEFFYRYPALGKDDNVHAVYKYWTSKRSKRAAPLLRVFQGA
PIRRGHLSQKSAMKRKRSFKRQKSQAGRGKPEALLQYNAEEDAALHRVAQAERAAKQAVE
RAIRLRNRAQSLMTNAELAAYKSVMALRIAEAARISDSSRDIVCTILD

Transcript Sequence

Transcript ID

Zm00001d024088_T001
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:43222466:43225929:1 gene:Zm00001d024088 gene_biotype:protein_coding transcript_biotype:protein_coding description:Enhancer of polycomb-like transcription factor protein
Sequence

TCCTCGGGTGGAGTCCCGGGCTCGACGAGACGGAGGCCAGGGTAGACGACGGAGGCGACG
AGGACGACGAGGCTGAGGAGGGGAAGCCCATGCCGGCCGCCGGGGCCCGCCGCTCCACTC
GCGTCTTCATGCCCAAGGCGGCTAAGCCGCCGCAATCCCAGGAGCACGTCGATCCCGCCA
CCCGGGTCCTCCGCTCCGGCAAGCGCCTCGCCGCCGACCGGATCCGCTGGGACGCCAAGG
AGGCGGCAGCCTTCCACGTCGACATCAATCACGGCCACGACCAGCAGCACCAAAAGGAAG
ATTACCCCAAACCGGGATTGCCAGCTCTGACAAAGTCCTTCGGGCTCGTGTACAGAAGGA
AACGCCGTCGCCGCCGGAGGCACCCCGCCGATGAGGTCGTCGCCGAGGACGAGGACGGCA
GCAGGAGGTTTGGGATAGTATACACCAGGAGGAAGGGCAAGCGATCGAAGGTCAGCCCTC
TCCTGGTCCCGCAAGAGCCAGAGGTCCCCTGTGACATCGCCGCCGCCATACCATGCTCCT
CCTCCCGGGAGTTTGCGTCAAGAACTGGTTTCTTGGATGCCCATTTCTCGGCCCTGGTAG
ATGATGCCGTCACTTACTCTGGGGCTCAGATGCTCGTCATCCTTGTCGATACGTCTTGTT
CTGGGAGCTCTCACCGGCTCACTGGCCTTCTTGTACCCATGCTGCGGTGGATGCGCCGCA
GTTGGCAGCGGGGGAAGTTCCGGAACCTTGCGACATTCATCTTCTCTTCGGGTATAGCTG
CTGCGTTTGCATCCCACGGGGTGCACTTTGTCAAGCTCCAGTGCCAGAGCGCTTCTGCAT
TGTTACACAGGCCTCTTGCGCATTGTGGGTGGTGTGTGCTTCATGGTTCCAAGAAATCTG
AACCGCTGCTCTCAGTCGATTTCTCAGCACTTCCTTCATACTTTTCGAGCTTGCATTATG
CTGTAGCTCTTGATTCGATGTATCTGTCAGCTATGATTCAGCACAGCAGGCTGCTGGTTG
AGGGATCTGAAGAAATCTATCCTCGCTCTCCTTTATATTTGGAATCTGGGGCTCAGAGCA
GTGGTTTTGCCGCTACGGCCGCGGGTAACAATGAACCTTGCAGAGTTGTTCCGAACTACA
TGCCCCTCGAACAAGTTGCTGGACTAGTGGCACATGGTCTGAGGTTGAAGAAGCATCAAA
GGCGGAGAACTATGAGACATCCCCGAAATCGGCGGCGACTTATTATAGCTAGATTACCTG
ACAATGGAATTGGGATGAAGCACAGTACAACTTCCATGCAAACAGAAGAAAATGTGCGAT
CAAGTAGGCAAGGACCTCCTGTGGAGCCTGTCTATCCTAAAGCAGCATTAGAAATTTCTC
TTGATTTGCTTGAAAACATGGATGAAAGTGATGTTTCGACTCCCATCGGATCAGCTAGGA
GAAAGAGATCTTCTTTGAAGAGCCCTGTTGAGAGAATGAATGAAAAGGTGGCCTTGGCTG
AGGTGAGACAGAACATAGATTCTGTTCAAAGCAAAGCGAATCTTCTAAATCTTCAAGCTG
ATAGGTGCTGGAGGGAAGAAGGTGCTGAAGTTATGCTAGAACTATCAGATACCAATAAGT
GGTGTATAGTTGTGAAGATACAAGGTATTACTAGGTATTCACTTAAACCTTCAGATGTTA
GGTCATATGTCATTAATCGTCATTCTCAAGCCTACATGTGGGCAGTTGATGATGCATGGA
AACTTGAGTTCACTGATAAGTGGGACTGGCTGTTATTCAAAGAGCTGCATGTTGTGGGCC
GTGAGCGTAATTCCCAGGGGAAGACAATCCCAATTCCTGGGGTACATGAAGTTTCTGATG
GCATGGAAGGGATTGTTACAGATCCTTTCTCACGCCCTGTGCCAGACTATATTAGGATGG
TGGATGATGAAGTTGGACGAGCTATCTCAAGAGATTCTATTTATGACATGGACTCAGAGG
ATGAACAATGGCTCATTCAGTTGAATCCTGCAGATTCAGATTCAAACAGCTCTCAAAGGA
ATCATCTCTCTTACGAAGACTTTGAGAGGATAATAAGCATATTTGAAAAGGATGCCTACA
ACAATGCCCAAGGAAAAAATGATTTGAGTGAGTTTTTTTATAGATATCCTGCTTTAGGAA
AGGATGATAACGTGCATGCTGTGTATAAATATTGGACAAGTAAGAGGTCCAAGAGAGCTG
CACCATTGCTTAGGGTATTTCAGGGTGCACCCATAAGGCGAGGGCATTTATCACAAAAGT
CTGCCATGAAGCGAAAGAGATCTTTCAAGAGACAAAAAAGCCAAGCTGGTCGTGGAAAGC
CTGAAGCTTTATTGCAATACAATGCTGAAGAGGACGCAGCTTTGCACAGAGTTGCCCAAG
CTGAACGTGCGGCAAAACAGGCTGTAGAAAGAGCTATTCGACTGCGCAACAGAGCCCAGT
CTCTCATGACAAACGCAGAGCTCGCAGCATACAAATCCGTCATGGCTCTCAGGATTGCCG
AGGCTGCTAGGATATCTGACTCGTCCCGAGATATTGTTTGTACTATCCTCGACTAAAGAA
AAATATGGGTTGTTCATTGATTTGTGTGGAGAGCATGGAAAATACTCTTCATCGCCCATG
ATATTGGCTTTTCGACAAGCTGTGGGGTTATATCCCCCCCCTTCTGTTAACTCACTTTGT
CAAGTCAATTTTGAGGCGAATGCTTGAACTGAAAACTGTAATTTCTTGTATAAATTGAAG
TAGTTAGCTAGATTTTGTA