Plant GARDEN
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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d024049_T017
CDS Infomation

cds chromosome:B73_RefGen_v4:10:39765540:39781460:-1 gene:Zm00001d024049 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

ATGGTGCTAGGCCTCCGAACCAAGACAAGGAAGGATTCTGCCTTCCATGTGGATTTCAAT
ATTCTCATCCAAGAAATCAGCCCATGGCCCCCTTCTGAATCGTTGAAGTCTTTGCGCTCC
GTAGTACTCTTCTGGGAAAATGGCGAGCGCAATTCAGGAAAGACGAGCACTGTTGCGCCT
TCAATTGGGTCAGGTTCCACAGCAGGGAAGATTGAATTTAATGAGTTCATAAACTTACAG
GCTATTTTCCAGAAGGAGGGGTCATCCAAGAGTGGAAAGTGGCAGAAGAACCTGCTTGAA
TTGAACTTGTATGAGCCGAGGAGGGAGAAGCTGAAGGGCCAGCATTTGGGGTCTGCAACA
CTAGACCTTGCAGAGCATGCAATGTTTCATGAGGACACCAGTGTTCCTGTGCCTCTCAGT
TCCAAGAGAAGTTTCAAAAACAATGCCCAACCCATGGTTTACCTCCGAATCCAGCCTTTG
GATGGCGATAACTCAAGCGTTTCTTCAAGAGATGCATTATCACAAGAGGCATCAGTTGAT
AAAGATTCAAAGGAATTTGTCTCAGCAACGGTGAGTGAGGAGTATACTGAAGATACAGAG
TTTGCTTCCTTTACTGATGAAGAAGAAGCAACTCCATACCTGTACCGCTCGGGTGTAACT
GCTCTCACAGGTAGCAATAGATCTCATGAATCCCTCAAGGGCAAGGATATCAGGTTAACT
AATAATGAAGGTACCAGCTCATCGTTGGATTCTCAACATGAAGCAACAGTATCCTGTATG
AAAGTGAGGAATGAAGAAGTTGAAAAGTTTCCAATTCAAGTGCAAAAGCAAAATGGCCAT
CCAGAAAATCTGTCTCTCTCATCAGATTTGCCCAGAGAACAAAGTCCGTCTCTTCCACCA
CACAATGCATTCAGAAGTGGTCGTAAAATGTCATTTGCATATGGTATGACTGAATCTAAC
CAAAGACAGTTTGGGGAGAGAACTTATAGCACTTTAACTACTGATAGAGCAAGGAATGCG
AGGTTCAGTATGAGAGTTCCAGATGTTAATGGAAGTATCATAAATAAGAAAGTTGATTCC
CAGGATATTGCAATTACTCATGAGAATAAGGCCAGTGTTGATGATGGATTGCAAGTCCAG
GAACCAATACGCATTTCAAATAATCGAAATGACAACAAAGTTCGAGAACTAGAACTTAAA
ATTGAGTTGCTTGAAGCAGAGCTAAGGGAAGCTGCCGCTGCTGAGATAGGCCTTTATTCA
ATAATTGCAGAACATGGTAGTTCAGTAAACAAGGTTCATACACCGGCACGGAGGCTCTCC
AGGCATTTTGTGCATGCACTAAAAAACTGTTCAAGAGACAAGATGGGAAGTGCAGCAAGG
AACACAACCTCTGGGCTGGTTTTGGTTGCAAAAGCTTGTGGATATGACATTGCAAGGTTG
AGTTTCTGGTTGTCAAACTGTGTTGTACTGCGAGCAATTGTTACTGAAACTTCTAGGCAA
TCGGGCACTGTAAATAGCAGCAATTATGGTGATTATAATTCCAAAACAACATACAGGAAA
AACTCTGCATCAATGTGGGAGTCACTTAATAGGAAGAAAGGAAAATTACTTTCCCCTGAG
TTTGATAACTGGGAAGATGTTGACACATTTATAGCTGCACTAAAGAAGATCGAATCATGG
ATATTTTCTCGAATTGTTGAAACCCTTTGGTGGCAGACATTCACACCACATATGCAATCT
GCTGATATAACTGGTGGTTTGAGAAGTACTCCAAATCCAAAAAAAGGCTATGGAAAGATT
CCTGTTGTGGGCAACCAGCAACAAGCAACCATATCAATGGACATATGGAAGAAAGCCTTT
AAGGAAGCGTCAGAACGGCTTTGCCCAGTAAGGGCAGCTGGTCATGAGTGTGGATGTCTG
CCTATGTTAACCAAGTTGGTGATGGAGCAGTGCATAGCTAGGTTGGATGTAGCAATGTTC
AATGCTATTTTGCGTGAATCAGATGATGAAATTCCAACAGACCCGCTGTCTGATCCCATA
ACTGATCCTAAAGTTCTTCCAATCCCATCTGGGAAATTCAGCTTCGGTGCTGGGGTCCAA
CTGAAAAATGCTGTGAGTTAA

Peptide Sequence

PEP ID

Zm00001d024049_P017
PEP Infomation

pep chromosome:B73_RefGen_v4:10:39765540:39781460:-1 gene:Zm00001d024049 transcript:Zm00001d024049_T017 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

MVLGLRTKTRKDSAFHVDFNILIQEISPWPPSESLKSLRSVVLFWENGERNSGKTSTVAP
SIGSGSTAGKIEFNEFINLQAIFQKEGSSKSGKWQKNLLELNLYEPRREKLKGQHLGSAT
LDLAEHAMFHEDTSVPVPLSSKRSFKNNAQPMVYLRIQPLDGDNSSVSSRDALSQEASVD
KDSKEFVSATVSEEYTEDTEFASFTDEEEATPYLYRSGVTALTGSNRSHESLKGKDIRLT
NNEGTSSSLDSQHEATVSCMKVRNEEVEKFPIQVQKQNGHPENLSLSSDLPREQSPSLPP
HNAFRSGRKMSFAYGMTESNQRQFGERTYSTLTTDRARNARFSMRVPDVNGSIINKKVDS
QDIAITHENKASVDDGLQVQEPIRISNNRNDNKVRELELKIELLEAELREAAAAEIGLYS
IIAEHGSSVNKVHTPARRLSRHFVHALKNCSRDKMGSAARNTTSGLVLVAKACGYDIARL
SFWLSNCVVLRAIVTETSRQSGTVNSSNYGDYNSKTTYRKNSASMWESLNRKKGKLLSPE
FDNWEDVDTFIAALKKIESWIFSRIVETLWWQTFTPHMQSADITGGLRSTPNPKKGYGKI
PVVGNQQQATISMDIWKKAFKEASERLCPVRAAGHECGCLPMLTKLVMEQCIARLDVAMF
NAILRESDDEIPTDPLSDPITDPKVLPIPSGKFSFGAGVQLKNAVS

Transcript Sequence

Transcript ID

Zm00001d024049_T017
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:39765540:39781460:-1 gene:Zm00001d024049 gene_biotype:protein_coding transcript_biotype:protein_coding
Sequence

GCTCCACAAGCAAAAGAACCCCAAAGTTCCGTGTGAGGTGTGACTCGAGCTCCCTAGATT
TCGATTAGAAAACTCGATCAGATTCTTTTCTTTCCTCTCCTCCGGAATAGTTTATTCCGC
TTTGCTTTGGGTCCACGATCTCTTCTTCGTCTCCTCCTCGAGGCAGAGGAAGACGTCCGG
CTTCTTGTATCCGCCTTGTTAGCCCCACACACCGACAACCTGGACTGCGCGTCCACGAAC
TCACTCGCCGAACAGACATCATTCCCCTTACCCCGACGTTTGAAATCCTCTCCAGCCGAT
GCATCCTCCCCATCAATCTTCTCCGGTTCGTTGCATTGCGTCTGGATTGGCCTGCCCCTG
CTAGATTCAGGGACTTCGCATCCATTGTGTCTGATTTCTTCTATTCAGAGTGAATTGCAG
AAGTAGACTGGTTTCTTCTTCATCCAGTAAGCTCAGTCTGTACCCTGCACTGCAACAATG
GTGCTAGGCCTCCGAACCAAGACAAGGAAGGATTCTGCCTTCCATGTGGATTTCAATATT
CTCATCCAAGAAATCAGCCCATGGCCCCCTTCTGAATCGTTGAAGTCTTTGCGCTCCGTA
GTACTCTTCTGGGAAAATGGCGAGCGCAATTCAGGAAAGACGAGCACTGTTGCGCCTTCA
ATTGGGTCAGGTTCCACAGCAGGGAAGATTGAATTTAATGAGTTCATAAACTTACAGGCT
ATTTTCCAGAAGGAGGGGTCATCCAAGAGTGGAAAGTGGCAGAAGAACCTGCTTGAATTG
AACTTGTATGAGCCGAGGAGGGAGAAGCTGAAGGGCCAGCATTTGGGGTCTGCAACACTA
GACCTTGCAGAGCATGCAATGTTTCATGAGGACACCAGTGTTCCTGTGCCTCTCAGTTCC
AAGAGAAGTTTCAAAAACAATGCCCAACCCATGGTTTACCTCCGAATCCAGCCTTTGGAT
GGCGATAACTCAAGCGTTTCTTCAAGAGATGCATTATCACAAGAGGCATCAGTTGATAAA
GATTCAAAGGAATTTGTCTCAGCAACGGTGAGTGAGGAGTATACTGAAGATACAGAGTTT
GCTTCCTTTACTGATGAAGAAGAAGCAACTCCATACCTGTACCGCTCGGGTGTAACTGCT
CTCACAGGTAGCAATAGATCTCATGAATCCCTCAAGGGCAAGGATATCAGGTTAACTAAT
AATGAAGGTACCAGCTCATCGTTGGATTCTCAACATGAAGCAACAGTATCCTGTATGAAA
GTGAGGAATGAAGAAGTTGAAAAGTTTCCAATTCAAGTGCAAAAGCAAAATGGCCATCCA
GAAAATCTGTCTCTCTCATCAGATTTGCCCAGAGAACAAAGTCCGTCTCTTCCACCACAC
AATGCATTCAGAAGTGGTCGTAAAATGTCATTTGCATATGGTATGACTGAATCTAACCAA
AGACAGTTTGGGGAGAGAACTTATAGCACTTTAACTACTGATAGAGCAAGGAATGCGAGG
TTCAGTATGAGAGTTCCAGATGTTAATGGAAGTATCATAAATAAGAAAGTTGATTCCCAG
GATATTGCAATTACTCATGAGAATAAGGCCAGTGTTGATGATGGATTGCAAGTCCAGGAA
CCAATACGCATTTCAAATAATCGAAATGACAACAAAGTTCGAGAACTAGAACTTAAAATT
GAGTTGCTTGAAGCAGAGCTAAGGGAAGCTGCCGCTGCTGAGATAGGCCTTTATTCAATA
ATTGCAGAACATGGTAGTTCAGTAAACAAGGTTCATACACCGGCACGGAGGCTCTCCAGG
CATTTTGTGCATGCACTAAAAAACTGTTCAAGAGACAAGATGGGAAGTGCAGCAAGGAAC
ACAACCTCTGGGCTGGTTTTGGTTGCAAAAGCTTGTGGATATGACATTGCAAGGTTGAGT
TTCTGGTTGTCAAACTGTGTTGTACTGCGAGCAATTGTTACTGAAACTTCTAGGCAATCG
GGCACTGTAAATAGCAGCAATTATGGTGATTATAATTCCAAAACAACATACAGGAAAAAC
TCTGCATCAATGTGGGAGTCACTTAATAGGAAGAAAGGAAAATTACTTTCCCCTGAGTTT
GATAACTGGGAAGATGTTGACACATTTATAGCTGCACTAAAGAAGATCGAATCATGGATA
TTTTCTCGAATTGTTGAAACCCTTTGGTGGCAGACATTCACACCACATATGCAATCTGCT
GATATAACTGGTGGTTTGAGAAGTACTCCAAATCCAAAAAAAGGCTATGGAAAGATTCCT
GTTGTGGGCAACCAGCAACAAGCAACCATATCAATGGACATATGGAAGAAAGCCTTTAAG
GAAGCGTCAGAACGGCTTTGCCCAGTAAGGGCAGCTGGTCATGAGTGTGGATGTCTGCCT
ATGTTAACCAAGTTGGTGATGGAGCAGTGCATAGCTAGGTTGGATGTAGCAATGTTCAAT
GCTATTTTGCGTGAATCAGATGATGAAATTCCAACAGACCCGCTGTCTGATCCCATAACT
GATCCTAAAGTTCTTCCAATCCCATCTGGGAAATTCAGCTTCGGTGCTGGGGTCCAACTG
AAAAATGCTGTGAGTTAAATAACAACTATGCTTATTGAGTTATTGTGAGGTCACACAACT
TACCGCCGATGGACCTTTTGTCTCCCTTAATTCTCATTTGTTACAAAGACCATTGACCTG
CTTCCCTCTTTTAGATTGGCAGCTGGTCTAGATGTCTTACTGACTTGTTTGGCATGGATA
TGGACGACTATCAAGAACTTGACAATGAAGGTGGTGAAAATGGCTTTGGTGAATCTGTAA
AGCCATTCTATCACCTGAATGCACTGAGTGATCTCCTAATGCTTCCCAAGGATGTGCTCA
TGGATACCAGTAGCAGGAAAGAGGCATGAAATCATATCTTGTTCAAAGGACTGCTCTATA
TTTTAATGTCTTATTGAAACGTTTTTTAAAATACCTATCTCGTTCAAAAGGGTGCTCTAT
ATTTTAATGACTTATTGAAACGTTTTTTTAAACAATATCTTACTGTCATGTAATGTTTTA
CAGCTTTGCCCTACCTTTAGCTCATCAATCATCAAGAACATCCTGGATGTCTTTTTACCA
GATGAATTTTGTCCAGATCCCATTCAAGGTTCTTTACTTCAAGCACTAGAGTTGGAGGAC
CACCTGGAGGTTAACAAGGGCATACGGTCGATCCCGTGCAGCGCATCGCCAATTTTGTAC
AATGCCCCTGTATCTGGGGCAATACTAAGCGTCATCGGTGATCCTAGGAAGAGCGGGTCC
GCCATCCTTCACAAGTCCAACACGAGCGATGACGAGCTTGATGAGCTGAGCTCCCCACTT
ACCTTCATCTCCAACACCTCATCAGACCCGCTTGCGAAGCTGAAGCGGATCAGCAACTCG
ACCACAGCGAGGTATAGGCTTCTCCATGAGGTGTGGAAGCTGGATGACCAGTAGGACTTG
ATCCTATCACCACCATGGTTCTCCCCTCTGTATATAGGTTTGTTTTTTTGCATATGATTC
CGGCTCATGTATAAGATTTCAGTCTATTTGTTATGTTATGTTACAAGAAGATGAGGGGCA
AGCGTTGAATCTTAATAAATCCGCTGTGT