Gene sequences

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Trait-Related Loci

Zea mays

CDS Sequence

CDS ID	Zm00001d024009_T001
CDS Infomation	cds chromosome:B73_RefGen_v4:10:36528738:36535462:1 gene:Zm00001d024009 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:cytokinin inducible protease1 description:Chaperone protein ClpC1 chloroplastic
Sequence	ATGGCAGGGACCTTACTCCAGTCAGTTGCCCTGGGAACACCATTTGGGGGTCGCATGAGA ACCCATTGTTGGAGGTCCCATGGCACCAGGAGGCCTGCCTCTATGTTGGCAGTGTCACTT AGCCGCCCTGTCAAGATGTCAGCATTTGTGGGTCTAAGATCAGTGCATAGCTTCTCGGTC ACACCGACGGTGTCCAATTCCAGGTCGGCAGTTGCATCTTACAGGTCATCGCGACAGACA AGACGATCTCGTTTTGTCACTCAGGCAATGTTTGAGAGGTTCACGGAGAAAGCTATTAAG GTCATCATGCTTGCGCAAGAGGAAGCAAGGCGCCTGGGCCACAACTTTGTTGGAACTGAG CAGATCCTCTTGGGTCTGATTGGAGAGGGCACTGGTATTGCAGCTAAGGTGCTCAAGTCC ATGGGAATAAATCTTAAGGATGCACGTGTGGAGGTGGAGAAGATTATTGGCCGCGGCAAT GGTTTTGTTGCTGTTGAAATACCATTCACACCACGTGCGAAACGTGTTTTGGAGCTCTCC TTGGAGGAAGCTCGCCAATTAGGACATAATTATATTGGATCTGAGCACCTGCTCCTTGGA CTGCTTCGTGAGGGTGAAGGTGTGGCGGCTCGTGTGCTTGAGAGTCTCGGAGCTGACCCC AGCAATATCCGTACACAAGTTATTCGAATGATTGGTGAGACCACAGAAGCTGTTGGTGCT GGAGTTGGCGGCGGCAGCAGTGGTAATAAGATGCCAACTCTTGAGGAGTATGGAACTAAT TTAACAAAATTAGCAGAGGAGGGAAAATTAGATCCTGTTGTTGGAAGGCAGCCACAAATT GAGCGTGTGGTACAAATTTTAGGCAGACGAACCAAGAACAATCCCTGCTTGATTGGAGAG CCTGGTGTTGGAAAAACTGCAATTGCTGAAGGACTTGCTCAGCGCATTTCTACAGGCGAT GTACCTGAAACAATAGAAGGGAAAAAGGTCATAACCCTTGACATGGGACTTCTTGTTGCT GGCACAAAGTACCGTGGAGAATTCGAAGAAAGATTAAAGAAGCTGATGGAGGAAATAAAG CAAAGTGATGAGATAATACTCTTTATTGATGAAGTTCACACTCTGATAGGAGCAGGAGCA GCGGAAGGTGCTATAGATGCTGCTAATATCTTGAAGCCTGCGTTGGCCAGAGGTGAATTA CAGTGCATTGGAGCCACTACACTAGATGAATATAGGAAGCACATTGAGAAAGACCCAGCA CTTGAACGGAGGTTTCAACCTGTGAAAGTGCCAGAACCAACAGTAGATGAAACCATTGAA ATCCTCAGAGGACTGAGGGAACGATATGAGATCCACCATAAACTTCGTTACACTGATGAA GCTCTGATTGCAGCTGCAAAGCTGTCATATCAATATATCAGTGATCGGTTTCTCCCAGAT AAGGCAATTGACTTGATTGATGAAGCAGGTTCCCGTGTTAGGCTACAGCATGCACAGGTC CCCGAGGAAGCAAGAGAGCTTGACAAGGAGCTCAAACAAGTCACGAAACAGAAGAATGAA GCTGTTCGAAGCCAGGATTTTGAGAAGGCTGGGGAATTGAGAGACCGTGAAATGGAATTG AAGGCCCAGATAACAGCCCTCATTGACAAGAGCAAGGAATTGAGCAAAGCAGAGGAAGAG TCTGGAGAGACAGGACCTATGGTCAATGAAGAAGATATCCAGCACATAGTATCTTCATGG ACTGGCATCCCTGTGGAGAAGGTTTCCAGCGATGAATCTGATAAGCTTCTTAAGATGGAA GAGACTTTGCACAAGCGTGTCATTGGCCAAGATGAGGCTGTGGTAGCAATTAGTCGCTCC ATCCGCCGTGCTCGTGTGGGTCTCAAGAACCCCAACAGGCCAATTGCAAGCTTTATTTTT GCTGGTCCCACCGGCGTTGGGAAGTCTGAGCTTGCAAAGGCTCTTGCAGCCTATTACTTT GGCTCTGAGGAGGCTATGATCCGGCTTGATATGAGTGAATTCATGGAGAGACACACGGTA TCCAAGCTGATTGGTTCACCTCCAGGATATGTAGGATACACTGAGGGTGGCCAGCTGACA GAGGCAGTTCGACGGCGGCCATACACAGTTGTGCTCTTTGATGAGATTGAGAAGGCACAC CCTGATGTCTTCAACATGATGCTTCAGATTTTGGAAGATGGGAGATTGACTGACAGCAAG GGAAGGACGGTGGACTTCAAGAACACACTCCTGATCATGACCTCAAATGTAGGGAGCAGT GTCATCGAGAAGGGTGGAAGGAAGATCGGATTTGACCTTGACTCTGATGAGAAGGACAGT AGCTACAGCAGGATCAAGAGCCTGGTCATCGAGGAGATGAAGCAGTATTTCCGACCTGAG TTCCTCAACCGTCTCGATGAGATGATCGTGTTCAGGCAGCTTACCAAGCTCGAGGTCAAG GAGATAGCGGACATCATGCTCCAGGAGGTCTTTGACAGGCTGAAGGCCAAGGACATCAAT CTTCAAGTGACCGAGAAGTTCAAGGAGCGGGTGGTGGACGAAGGCTACAACCCTAGCTAT GGTGCACGCCCGCTGAGGCGAGCCATCATGAGGCTGCTGGAGGACAGCCTTGCTGAGAAG ATGCTCGCAGGGGAGGTAAAGGAGGGCGACTCTGCCATAGTAGATGTGGACTCGGAGGGG AAGGTTGTTGTGCTCAATGGTCAGGGCGGCATACCGGAGCTCTCAACTCCGGCGATCACC GTTTAG

Peptide Sequence

PEP ID	Zm00001d024009_P001
PEP Infomation	pep chromosome:B73_RefGen_v4:10:36528738:36535462:1 gene:Zm00001d024009 transcript:Zm00001d024009_T001 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:cytokinin inducible protease1 description:Chaperone protein ClpC1 chloroplastic
Sequence	MAGTLLQSVALGTPFGGRMRTHCWRSHGTRRPASMLAVSLSRPVKMSAFVGLRSVHSFSV TPTVSNSRSAVASYRSSRQTRRSRFVTQAMFERFTEKAIKVIMLAQEEARRLGHNFVGTE QILLGLIGEGTGIAAKVLKSMGINLKDARVEVEKIIGRGNGFVAVEIPFTPRAKRVLELS LEEARQLGHNYIGSEHLLLGLLREGEGVAARVLESLGADPSNIRTQVIRMIGETTEAVGA GVGGGSSGNKMPTLEEYGTNLTKLAEEGKLDPVVGRQPQIERVVQILGRRTKNNPCLIGE PGVGKTAIAEGLAQRISTGDVPETIEGKKVITLDMGLLVAGTKYRGEFEERLKKLMEEIK QSDEIILFIDEVHTLIGAGAAEGAIDAANILKPALARGELQCIGATTLDEYRKHIEKDPA LERRFQPVKVPEPTVDETIEILRGLRERYEIHHKLRYTDEALIAAAKLSYQYISDRFLPD KAIDLIDEAGSRVRLQHAQVPEEARELDKELKQVTKQKNEAVRSQDFEKAGELRDREMEL KAQITALIDKSKELSKAEEESGETGPMVNEEDIQHIVSSWTGIPVEKVSSDESDKLLKME ETLHKRVIGQDEAVVAISRSIRRARVGLKNPNRPIASFIFAGPTGVGKSELAKALAAYYF GSEEAMIRLDMSEFMERHTVSKLIGSPPGYVGYTEGGQLTEAVRRRPYTVVLFDEIEKAH PDVFNMMLQILEDGRLTDSKGRTVDFKNTLLIMTSNVGSSVIEKGGRKIGFDLDSDEKDS SYSRIKSLVIEEMKQYFRPEFLNRLDEMIVFRQLTKLEVKEIADIMLQEVFDRLKAKDIN LQVTEKFKERVVDEGYNPSYGARPLRRAIMRLLEDSLAEKMLAGEVKEGDSAIVDVDSEG KVVVLNGQGGIPELSTPAITV

Transcript Sequence

Transcript ID	Zm00001d024009_T001
Transcript Infomation	cdna chromosome:B73_RefGen_v4:10:36528738:36535462:1 gene:Zm00001d024009 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:cytokinin inducible protease1 description:Chaperone protein ClpC1 chloroplastic
Sequence	GCGAAAAGAAAATAGGAAACAGACAAAAAAGGCAGAATCAGGAGGCTAGACGAAAGGAGG AGAAAGAGAGAACAATCAGTAGTTTTCTTTCTTGTTGGACATTCGGGCGGCCAAAGCAGC GGCCCCCTTATCTCCAGGGACCAGGGGAGGTCGCACACCAACGCACCGTCCTTCCCTTTC CTCCTCCTCCTCCCTCTCCTCGGAAGGTCAAGTGACGGTATTTGTGACCATGGCAGGGAC CTTACTCCAGTCAGTTGCCCTGGGAACACCATTTGGGGGTCGCATGAGAACCCATTGTTG GAGGTCCCATGGCACCAGGAGGCCTGCCTCTATGTTGGCAGTGTCACTTAGCCGCCCTGT CAAGATGTCAGCATTTGTGGGTCTAAGATCAGTGCATAGCTTCTCGGTCACACCGACGGT GTCCAATTCCAGGTCGGCAGTTGCATCTTACAGGTCATCGCGACAGACAAGACGATCTCG TTTTGTCACTCAGGCAATGTTTGAGAGGTTCACGGAGAAAGCTATTAAGGTCATCATGCT TGCGCAAGAGGAAGCAAGGCGCCTGGGCCACAACTTTGTTGGAACTGAGCAGATCCTCTT GGGTCTGATTGGAGAGGGCACTGGTATTGCAGCTAAGGTGCTCAAGTCCATGGGAATAAA TCTTAAGGATGCACGTGTGGAGGTGGAGAAGATTATTGGCCGCGGCAATGGTTTTGTTGC TGTTGAAATACCATTCACACCACGTGCGAAACGTGTTTTGGAGCTCTCCTTGGAGGAAGC TCGCCAATTAGGACATAATTATATTGGATCTGAGCACCTGCTCCTTGGACTGCTTCGTGA GGGTGAAGGTGTGGCGGCTCGTGTGCTTGAGAGTCTCGGAGCTGACCCCAGCAATATCCG TACACAAGTTATTCGAATGATTGGTGAGACCACAGAAGCTGTTGGTGCTGGAGTTGGCGG CGGCAGCAGTGGTAATAAGATGCCAACTCTTGAGGAGTATGGAACTAATTTAACAAAATT AGCAGAGGAGGGAAAATTAGATCCTGTTGTTGGAAGGCAGCCACAAATTGAGCGTGTGGT ACAAATTTTAGGCAGACGAACCAAGAACAATCCCTGCTTGATTGGAGAGCCTGGTGTTGG AAAAACTGCAATTGCTGAAGGACTTGCTCAGCGCATTTCTACAGGCGATGTACCTGAAAC AATAGAAGGGAAAAAGGTCATAACCCTTGACATGGGACTTCTTGTTGCTGGCACAAAGTA CCGTGGAGAATTCGAAGAAAGATTAAAGAAGCTGATGGAGGAAATAAAGCAAAGTGATGA GATAATACTCTTTATTGATGAAGTTCACACTCTGATAGGAGCAGGAGCAGCGGAAGGTGC TATAGATGCTGCTAATATCTTGAAGCCTGCGTTGGCCAGAGGTGAATTACAGTGCATTGG AGCCACTACACTAGATGAATATAGGAAGCACATTGAGAAAGACCCAGCACTTGAACGGAG GTTTCAACCTGTGAAAGTGCCAGAACCAACAGTAGATGAAACCATTGAAATCCTCAGAGG ACTGAGGGAACGATATGAGATCCACCATAAACTTCGTTACACTGATGAAGCTCTGATTGC AGCTGCAAAGCTGTCATATCAATATATCAGTGATCGGTTTCTCCCAGATAAGGCAATTGA CTTGATTGATGAAGCAGGTTCCCGTGTTAGGCTACAGCATGCACAGGTCCCCGAGGAAGC AAGAGAGCTTGACAAGGAGCTCAAACAAGTCACGAAACAGAAGAATGAAGCTGTTCGAAG CCAGGATTTTGAGAAGGCTGGGGAATTGAGAGACCGTGAAATGGAATTGAAGGCCCAGAT AACAGCCCTCATTGACAAGAGCAAGGAATTGAGCAAAGCAGAGGAAGAGTCTGGAGAGAC AGGACCTATGGTCAATGAAGAAGATATCCAGCACATAGTATCTTCATGGACTGGCATCCC TGTGGAGAAGGTTTCCAGCGATGAATCTGATAAGCTTCTTAAGATGGAAGAGACTTTGCA CAAGCGTGTCATTGGCCAAGATGAGGCTGTGGTAGCAATTAGTCGCTCCATCCGCCGTGC TCGTGTGGGTCTCAAGAACCCCAACAGGCCAATTGCAAGCTTTATTTTTGCTGGTCCCAC CGGCGTTGGGAAGTCTGAGCTTGCAAAGGCTCTTGCAGCCTATTACTTTGGCTCTGAGGA GGCTATGATCCGGCTTGATATGAGTGAATTCATGGAGAGACACACGGTATCCAAGCTGAT TGGTTCACCTCCAGGATATGTAGGATACACTGAGGGTGGCCAGCTGACAGAGGCAGTTCG ACGGCGGCCATACACAGTTGTGCTCTTTGATGAGATTGAGAAGGCACACCCTGATGTCTT CAACATGATGCTTCAGATTTTGGAAGATGGGAGATTGACTGACAGCAAGGGAAGGACGGT GGACTTCAAGAACACACTCCTGATCATGACCTCAAATGTAGGGAGCAGTGTCATCGAGAA GGGTGGAAGGAAGATCGGATTTGACCTTGACTCTGATGAGAAGGACAGTAGCTACAGCAG GATCAAGAGCCTGGTCATCGAGGAGATGAAGCAGTATTTCCGACCTGAGTTCCTCAACCG TCTCGATGAGATGATCGTGTTCAGGCAGCTTACCAAGCTCGAGGTCAAGGAGATAGCGGA CATCATGCTCCAGGAGGTCTTTGACAGGCTGAAGGCCAAGGACATCAATCTTCAAGTGAC CGAGAAGTTCAAGGAGCGGGTGGTGGACGAAGGCTACAACCCTAGCTATGGTGCACGCCC GCTGAGGCGAGCCATCATGAGGCTGCTGGAGGACAGCCTTGCTGAGAAGATGCTCGCAGG GGAGGTAAAGGAGGGCGACTCTGCCATAGTAGATGTGGACTCGGAGGGGAAGGTTGTTGT GCTCAATGGTCAGGGCGGCATACCGGAGCTCTCAACTCCGGCGATCACCGTTTAGCTCGT ACATAACAAATGACAAAATTAATAGCATAGTTTTTGTTCAAACACATTATCATTTATGGT TAGAATATCTGTGTATATGTAGTGGTATAGTCAATGGGGAAATCGTTCCTGCCTCTAAAT TCCTTTTTTTCAAGTTAAGGTGTTTCTTTTGTCGCAAGTTAATCTGCCTGGTTATTAAGA TATTGTTTACAGAGTGATGTG