Plant GARDEN
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TOP > About the Species(Zea mays ) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Zea mays

CDS Sequence

CDS ID

Zm00001d023962_T007
CDS Infomation

cds chromosome:B73_RefGen_v4:10:32089634:32094242:-1 gene:Zm00001d023962 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Alfin-like-transcription factor 6 description:PHD finger protein ALFIN-LIKE 6
Sequence

ATGGACGGAGGAGCCGGCTTCCCTGGCACGCCGGTCCCGCGCTCGCCGGAGGACGTTTTC
CGGGACTACCGCGCGCGCCAGGCCGGCCTAATCAGGGCGCTCACCACCGATGTTGAGAAG
TTCTACGTGATGTGCGACCCAGAGAAGGATAATTTATGTTTATATGGACTTCCCAATGAG
ACATGGGAAGTAAACTTGCCTGCTGAGGAGGTTCCTCCTGAACTCCCAGAGCCAGCTCTC
GGAATTAATTTTGCTCGTGATGGGATGAATGAAAAAGATTGGCTATCACTTGTTGCAGTG
CATAGTGATTCTTGGCTAATGTCTGTTGCATTTTATTTTGGAGCAAGGTTTGGATTCGAC
AAGGAATCCAGGGCCTGCATTGTCAGGGTTCTGGGGTTTATCAGTCGGTTGAAGACTATG
TTTCTTCTTCCAACCAATACTTGGACATACAACTACAAAATCCTTGTTCAAGTTGATGCC
AGATGGTGGCAGCTGTCAGCTATTTTGGGTGTAGTGTCGCTTTTGAGGAAACGTCTCTTC
ACCATGATCAATAATCTTCCCAGCATATATGAGGTTGTCACAGGAACAGCCAAGAAAGAG
TCCAAAGAAAAAACTCCTAAAAGCAGCAACAAGACTAACAAATCTGGCTCAAAGCCTTCA
CGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCCACCTCCAAAGGACGAGGAGAGT
GAAGGGGAGGAAGGTGAACCACAGGAAGACCATGAGAGTGCGCTGTGCGGCGCATGTGGC
CTAGGTTATGACGACTTCTGGATCTGTTGCGACTTATGCGAGACATGGTTCCACGGCAAG
TGTGTCAAGATCACCCCAAATAAAGCGGAGCACATCAAGCAGTATAAGTGCCCCTCGTGC
ACAGGAAGCAAGAGGGCCAAGGCTTGA

Peptide Sequence

PEP ID

Zm00001d023962_P007
PEP Infomation

pep chromosome:B73_RefGen_v4:10:32089634:32094242:-1 gene:Zm00001d023962 transcript:Zm00001d023962_T007 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Alfin-like-transcription factor 6 description:PHD finger protein ALFIN-LIKE 6
Sequence

MDGGAGFPGTPVPRSPEDVFRDYRARQAGLIRALTTDVEKFYVMCDPEKDNLCLYGLPNE
TWEVNLPAEEVPPELPEPALGINFARDGMNEKDWLSLVAVHSDSWLMSVAFYFGARFGFD
KESRACIVRVLGFISRLKTMFLLPTNTWTYNYKILVQVDARWWQLSAILGVVSLLRKRLF
TMINNLPSIYEVVTGTAKKESKEKTPKSSNKTNKSGSKPSRQVEPNSRVPKMPPPKDEES
EGEEGEPQEDHESALCGACGLGYDDFWICCDLCETWFHGKCVKITPNKAEHIKQYKCPSC
TGSKRAKA

Transcript Sequence

Transcript ID

Zm00001d023962_T007
Transcript Infomation

cdna chromosome:B73_RefGen_v4:10:32089634:32094242:-1 gene:Zm00001d023962 gene_biotype:protein_coding transcript_biotype:protein_coding gene_symbol:Alfin-like-transcription factor 6 description:PHD finger protein ALFIN-LIKE 6
Sequence

AGTGCCGTGCCAAATAGGGCCGCAAACTATCGGACTCATTGGAAGGCCCGCGACTGCGGC
TGCGCCTGCGCCCGACCAAACGTAGGAGACCCATCTCCTCTCTTTTCTTTCCAAGAAAAG
TCTTCTCTTCTCTGTCTCAGCGCCGACGCTTCCCAACTCCTTCCAATCGATTCTTCGTCT
CGTCCTCGTGTAATCCCCAGCTTGCCCTCCTCGCTCTTCCCTCCCAAAACCCTACGCCTC
CCTGACCAAGCTCCGGGGACGAATGGACGGAGGAGCCGGCTTCCCTGGCACGCCGGTCCC
GCGCTCGCCGGAGGACGTTTTCCGGGACTACCGCGCGCGCCAGGCCGGCCTAATCAGGGC
GCTCACCACCGATGTTGAGAAGTTCTACGTGATGTGCGACCCAGAGAAGGATAATTTATG
TTTATATGGACTTCCCAATGAGACATGGGAAGTAAACTTGCCTGCTGAGGAGGTTCCTCC
TGAACTCCCAGAGCCAGCTCTCGGAATTAATTTTGCTCGTGATGGGATGAATGAAAAAGA
TTGGCTATCACTTGTTGCAGTGCATAGTGATTCTTGGCTAATGTCTGTTGCATTTTATTT
TGGAGCAAGGTTTGGATTCGACAAGGAATCCAGGGCCTGCATTGTCAGGGTTCTGGGGTT
TATCAGTCGGTTGAAGACTATGTTTCTTCTTCCAACCAATACTTGGACATACAACTACAA
AATCCTTGTTCAAGTTGATGCCAGATGGTGGCAGCTGTCAGCTATTTTGGGTGTAGTGTC
GCTTTTGAGGAAACGTCTCTTCACCATGATCAATAATCTTCCCAGCATATATGAGGTTGT
CACAGGAACAGCCAAGAAAGAGTCCAAAGAAAAAACTCCTAAAAGCAGCAACAAGACTAA
CAAATCTGGCTCAAAGCCTTCACGCCAGGTAGAACCCAACTCCAGGGTCCCAAAGATGCC
ACCTCCAAAGGACGAGGAGAGTGAAGGGGAGGAAGGTGAACCACAGGAAGACCATGAGAG
TGCGCTGTGCGGCGCATGTGGCCTAGGTTATGACGACTTCTGGATCTGTTGCGACTTATG
CGAGACATGGTTCCACGGCAAGTGTGTCAAGATCACCCCAAATAAAGCGGAGCACATCAA
GCAGTATAAGTGCCCCTCGTGCACAGGAAGCAAGAGGGCCAAGGCTTGATTCTATGAACC
GAGGAGCCTTTGACGAGAGTTGTAAGATGAATCTTCCGGGTAGGGCAGCTAATAGATTTG
AATACTTCGTGTGGATACTGTCGGCATTGGTGCTTGAGATGCCTCAAAATATAGTGTCAG
TACTGATCAACTGTTAACTGTTGTAGTTTGTGGGGCCCTCAGGCATCTATGTTCTGTAGT
CTA